Gcaud4013.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud4013.t1
Unique Name	Gcaud4013.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	586

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_109_length_49829_cov_5.154108	contig	NODE_109_length_49829_cov_5.154108:44507..46569 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud4013	Gcaud4013	Gracilaria caudata M_176_S67 male	gene	NODE_109_length_49829_cov_5.154108 44507..46569 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4013.t1	Gcaud4013.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_109_length_49829_cov_5.154108 44507..46569 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4013.t1.stop1	Gcaud4013.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_109_length_49829_cov_5.154108 44507..44509 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4013.t1.CDS1	Gcaud4013.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_109_length_49829_cov_5.154108 44507..44698 -
Gcaud4013.t1.CDS2	Gcaud4013.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_109_length_49829_cov_5.154108 44807..44940 -
Gcaud4013.t1.CDS3	Gcaud4013.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_109_length_49829_cov_5.154108 45034..45207 -
Gcaud4013.t1.CDS4	Gcaud4013.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_109_length_49829_cov_5.154108 45312..46569 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4013.t1.exon1	Gcaud4013.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_109_length_49829_cov_5.154108 44507..44698 -
Gcaud4013.t1.exon2	Gcaud4013.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_109_length_49829_cov_5.154108 44807..44940 -
Gcaud4013.t1.exon3	Gcaud4013.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_109_length_49829_cov_5.154108 45034..45207 -
Gcaud4013.t1.exon4	Gcaud4013.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_109_length_49829_cov_5.154108 45312..46569 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4013.t1.intron1	Gcaud4013.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_109_length_49829_cov_5.154108 44699..44806 -
Gcaud4013.t1.intron2	Gcaud4013.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_109_length_49829_cov_5.154108 44941..45033 -
Gcaud4013.t1.intron3	Gcaud4013.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_109_length_49829_cov_5.154108 45208..45311 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud4013.t1.start1	Gcaud4013.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_109_length_49829_cov_5.154108 46567..46569 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_109_length_49829_cov_5.154108:44507..46569-
coding sequence from alignment at NODE_109_length_49829_cov_5.154108:44507..46569-

mRNA sequence

>Gcaud4013.t1 ID=Gcaud4013.t1|Name=Gcaud4013.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=586bp
MKRSLVKRNSCRKLTNSLMIVVIALFLLILPVLANIIEDFHALNCSSYDP
EKRLQEAGDAGNCLSALRDPLYRNEFDKCKENICFLLNLEPPIVTYNPDV
FHAEGNLKQMQLPFLCRNPRKRHRSFGGLAFNILQATSAKDEYCAWVGPL
KSCTWNALVDYVAVMGEKEGYQFALVGPMLETPQRKCFHFESSSWWDGKM
VVLGRNVRENMASVHPIWQLVSPFQRETWIVVGSVTVLFVIVCLMIVYRF
HVFRGQSLITAVTAYFVVMGERTEALAIGRRRKTMTKGKGFATGFANVKI
GDVKKGSLDGLETEMPSQYTRSDSDAWQEIEEYESKVEDETKRKEAFLTK
FSLATSLFRISIIAFVAIFSLFYEVAVVNFLFQQQNLQITKDIEHLTLSE
LSRYSLVQDTAMEAIWNFRVNPRRTKFDESDRFQIPWKRCRTGPECFHWV
LDENNPVQFYVTYNIEAIHLTEAEADCDLVTIFETKGTIHRFNSGWLFNA
QVPTERRRKLDRELGGLKIKGTLSHLLGGRREGCAPTTISSITFVIILLP
VSFLVLPPLLFSAMVALSWRRNNTTENNASTLLPE*

spliced messenger RNA

>Gcaud4013.t1 ID=Gcaud4013.t1|Name=Gcaud4013.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1758bp|location=Sequence derived from alignment at NODE_109_length_49829_cov_5.154108:44507..46569- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGATCATTAGTGAAGCGCAACAGCTGCCGCAAACTCACCAACTC
CTTGATGATTGTTGTCATTGCTCTCTTTTTGCTGATACTTCCCGTGTTAG
CTAACATTATTGAAGACTTCCACGCCCTCAACTGTTCATCCTACGATCCC
GAGAAGAGGCTTCAAGAGGCAGGAGATGCTGGTAACTGTCTCAGCGCCCT
TCGGGACCCACTTTATCGTAACGAGTTTGACAAGTGCAAAGAGAACATAT
GCTTCCTTTTGAACCTTGAACCACCCATCGTGACTTACAACCCGGATGTT
TTCCATGCGGAAGGGAATCTAAAACAAATGCAACTACCGTTCTTGTGCAG
AAACCCCAGAAAAAGACATCGATCTTTTGGGGGGCTTGCCTTCAATATCT
TACAAGCAACTAGTGCTAAGGACGAGTATTGTGCTTGGGTTGGGCCTCTG
AAGTCGTGTACATGGAACGCACTGGTTGACTATGTTGCAGTGATGGGTGA
GAAAGAAGGGTATCAATTTGCATTGGTAGGTCCTATGTTGGAAACGCCAC
AAAGGAAGTGCTTCCATTTCGAAAGTAGTTCATGGTGGGACGGGAAGATG
GTGGTACTGGGAAGAAATGTGCGTGAAAACATGGCGAGTGTGCATCCTAT
ATGGCAACTAGTTAGTCCATTTCAACGGGAAACATGGATTGTTGTTGGAA
GCGTAACTGTGCTTTTTGTGATTGTGTGTCTTATGATTGTGTATCGATTC
CATGTGTTTCGCGGACAGTCATTGATCACAGCAGTGACAGCATATTTTGT
CGTTATGGGAGAGAGAACCGAGGCATTAGCCATTGGACGAAGAAGAAAGA
CTATGACAAAAGGAAAGGGCTTTGCTACAGGATTTGCTAATGTAAAGATT
GGTGATGTAAAGAAGGGCAGTCTCGATGGTCTGGAAACCGAGATGCCTTC
GCAGTACACTCGCAGTGATTCAGATGCATGGCAGGAAATTGAAGAATATG
AATCTAAGGTGGAGGACGAAACCAAACGGAAAGAAGCTTTTCTGACAAAG
TTCAGTCTGGCAACTTCTCTTTTTCGTATATCAATTATAGCGTTCGTGGC
AATATTTTCCTTATTCTACGAGGTAGCAGTGGTGAACTTTCTCTTTCAGC
AACAAAACCTCCAAATTACGAAAGACATCGAGCATTTGACTTTGTCAGAG
CTGAGCAGATATTCACTAGTACAAGATACAGCTATGGAAGCCATTTGGAA
CTTCAGAGTGAATCCTCGCAGAACGAAATTTGACGAAAGCGATAGGTTTC
AGATTCCATGGAAGCGCTGTCGAACTGGGCCAGAATGCTTTCATTGGGTT
CTCGATGAAAACAACCCTGTTCAGTTCTACGTAACGTATAACATCGAAGC
CATACATTTAACTGAAGCCGAAGCAGATTGCGATTTGGTCACTATATTTG
AAACGAAAGGTACAATCCACCGCTTTAATAGCGGGTGGTTGTTCAATGCA
CAAGTTCCAACTGAGAGGCGCAGAAAATTAGACCGTGAACTCGGGGGATT
GAAAATCAAGGGAACGTTGTCTCATTTGCTTGGTGGAAGACGAGAGGGGT
GTGCACCAACCACGATCTCCAGCATAACGTTCGTGATTATTCTTCTTCCT
GTTTCGTTCCTTGTTCTTCCGCCTCTGCTTTTCTCGGCTATGGTTGCATT
GAGCTGGAGGCGGAATAATACAACAGAGAACAACGCATCGACCTTGCTTC
CTGAGTGA

protein sequence of Gcaud4013.t1

>Gcaud4013.t1 ID=Gcaud4013.t1|Name=Gcaud4013.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=586bp
MKRSLVKRNSCRKLTNSLMIVVIALFLLILPVLANIIEDFHALNCSSYDP
EKRLQEAGDAGNCLSALRDPLYRNEFDKCKENICFLLNLEPPIVTYNPDV
FHAEGNLKQMQLPFLCRNPRKRHRSFGGLAFNILQATSAKDEYCAWVGPL
KSCTWNALVDYVAVMGEKEGYQFALVGPMLETPQRKCFHFESSSWWDGKM
VVLGRNVRENMASVHPIWQLVSPFQRETWIVVGSVTVLFVIVCLMIVYRF
HVFRGQSLITAVTAYFVVMGERTEALAIGRRRKTMTKGKGFATGFANVKI
GDVKKGSLDGLETEMPSQYTRSDSDAWQEIEEYESKVEDETKRKEAFLTK
FSLATSLFRISIIAFVAIFSLFYEVAVVNFLFQQQNLQITKDIEHLTLSE
LSRYSLVQDTAMEAIWNFRVNPRRTKFDESDRFQIPWKRCRTGPECFHWV
LDENNPVQFYVTYNIEAIHLTEAEADCDLVTIFETKGTIHRFNSGWLFNA
QVPTERRRKLDRELGGLKIKGTLSHLLGGRREGCAPTTISSITFVIILLP
VSFLVLPPLLFSAMVALSWRRNNTTENNASTLLPE*

mRNA from alignment at NODE_109_length_49829_cov_5.154108:44507..46569-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud4013.t1 ID=Gcaud4013.t1|Name=Gcaud4013.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2063bp|location=Sequence derived from alignment at NODE_109_length_49829_cov_5.154108:44507..46569- (Gracilaria caudata M_176_S67 male)
ATGAAGAGATCATTAGTGAAGCGCAACAGCTGCCGCAAACTCACCAACTC
CTTGATGATTGTTGTCATTGCTCTCTTTTTGCTGATACTTCCCGTGTTAG
CTAACATTATTGAAGACTTCCACGCCCTCAACTGTTCATCCTACGATCCC
GAGAAGAGGCTTCAAGAGGCAGGAGATGCTGGTAACTGTCTCAGCGCCCT
TCGGGACCCACTTTATCGTAACGAGTTTGACAAGTGCAAAGAGAACATAT
GCTTCCTTTTGAACCTTGAACCACCCATCGTGACTTACAACCCGGATGTT
TTCCATGCGGAAGGGAATCTAAAACAAATGCAACTACCGTTCTTGTGCAG
AAACCCCAGAAAAAGACATCGATCTTTTGGGGGGCTTGCCTTCAATATCT
TACAAGCAACTAGTGCTAAGGACGAGTATTGTGCTTGGGTTGGGCCTCTG
AAGTCGTGTACATGGAACGCACTGGTTGACTATGTTGCAGTGATGGGTGA
GAAAGAAGGGTATCAATTTGCATTGGTAGGTCCTATGTTGGAAACGCCAC
AAAGGAAGTGCTTCCATTTCGAAAGTAGTTCATGGTGGGACGGGAAGATG
GTGGTACTGGGAAGAAATGTGCGTGAAAACATGGCGAGTGTGCATCCTAT
ATGGCAACTAGTTAGTCCATTTCAACGGGAAACATGGATTGTTGTTGGAA
GCGTAACTGTGCTTTTTGTGATTGTGTGTCTTATGATTGTGTATCGATTC
CATGTGTTTCGCGGACAGTCATTGATCACAGCAGTGACAGCATATTTTGT
CGTTATGGGAGAGAGAACCGAGGCATTAGCCATTGGACGAAGAAGAAAGA
CTATGACAAAAGGAAAGGGCTTTGCTACAGGATTTGCTAATGTAAAGATT
GGTGATGTAAAGAAGGGCAGTCTCGATGGTCTGGAAACCGAGATGCCTTC
GCAGTACACTCGCAGTGATTCAGATGCATGGCAGGAAATTGAAGAATATG
AATCTAAGGTGGAGGACGAAACCAAACGGAAAGAAGCTTTTCTGACAAAG
TTCAGTCTGGCAACTTCTCTTTTTCGTATATCAATTATAGCGTTCGTGGC
AATATTTTCCTTATTCTACGAGGTAGCAGTGGTGAACTTTCTCTTTCAGC
AACAAAACCTCCAAATTACGAAAGACATCGAGCATTTGACTTTGTCAGAG
CTGAGCAGATATTCACTAGTACAAGATACAGCTATGGAAGCCATTTGGAA
CTTCAGAGGTACGAGGAGAATACTTTCTTTACGTTTTCTTCTTATCTTGT
ATTGTTCAAATTGGTACTAACTCCCAGCGAATTGGTCCAACTCGCTTTCA
ATACGTACGCAGTGAATCCTCGCAGAACGAAATTTGACGAAAGCGATAGG
TTTCAGATTCCATGGAAGCGCTGTCGAACTGGGCCAGAATGCTTTCATTG
GGTTCTCGATGAAAACAACCCTGTTCAGTTCTACGTAACGTATAACATCG
AAGCCATACATTTAACTGAAGCCGAAGCAGATTGCGGTAAGTTAGATTCT
TTTTTCTTTTTGCTCGAGATCTTTGAAGAATCCTTCCCTTCCGCTAACTC
TCCTATGGTAATCTTTTGAACGACTGAAGATTTGGTCACTATATTTGAAA
CGAAAGGTACAATCCACCGCTTTAATAGCGGGTGGTTGTTCAATGCACAA
GTTCCAACTGAGAGGCGCAGAAAATTAGACCGTGAACTCGGGGGATTGAA
AATCAAGGGAACGGTATGTCGTGCGAACGCCAAGTCATGCAAACGCTTGT
ACTATATTGCAATAGTTGGAGGCTGATTGACGTCTAACTACCCCCATTTC
TCCTGTGTACGTGTCTCGCAGTTGTCTCATTTGCTTGGTGGAAGACGAGA
GGGGTGTGCACCAACCACGATCTCCAGCATAACGTTCGTGATTATTCTTC
TTCCTGTTTCGTTCCTTGTTCTTCCGCCTCTGCTTTTCTCGGCTATGGTT
GCATTGAGCTGGAGGCGGAATAATACAACAGAGAACAACGCATCGACCTT
GCTTCCTGAGTGA

Coding sequence (CDS) from alignment at NODE_109_length_49829_cov_5.154108:44507..46569-

>Gcaud4013.t1 ID=Gcaud4013.t1|Name=Gcaud4013.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1758bp|location=Sequence derived from alignment at NODE_109_length_49829_cov_5.154108:44507..46569- (Gracilaria caudata M_176_S67 male)
ATGAAGAGATCATTAGTGAAGCGCAACAGCTGCCGCAAACTCACCAACTC
CTTGATGATTGTTGTCATTGCTCTCTTTTTGCTGATACTTCCCGTGTTAG
CTAACATTATTGAAGACTTCCACGCCCTCAACTGTTCATCCTACGATCCC
GAGAAGAGGCTTCAAGAGGCAGGAGATGCTGGTAACTGTCTCAGCGCCCT
TCGGGACCCACTTTATCGTAACGAGTTTGACAAGTGCAAAGAGAACATAT
GCTTCCTTTTGAACCTTGAACCACCCATCGTGACTTACAACCCGGATGTT
TTCCATGCGGAAGGGAATCTAAAACAAATGCAACTACCGTTCTTGTGCAG
AAACCCCAGAAAAAGACATCGATCTTTTGGGGGGCTTGCCTTCAATATCT
TACAAGCAACTAGTGCTAAGGACGAGTATTGTGCTTGGGTTGGGCCTCTG
AAGTCGTGTACATGGAACGCACTGGTTGACTATGTTGCAGTGATGGGTGA
GAAAGAAGGGTATCAATTTGCATTGGTAGGTCCTATGTTGGAAACGCCAC
AAAGGAAGTGCTTCCATTTCGAAAGTAGTTCATGGTGGGACGGGAAGATG
GTGGTACTGGGAAGAAATGTGCGTGAAAACATGGCGAGTGTGCATCCTAT
ATGGCAACTAGTTAGTCCATTTCAACGGGAAACATGGATTGTTGTTGGAA
GCGTAACTGTGCTTTTTGTGATTGTGTGTCTTATGATTGTGTATCGATTC
CATGTGTTTCGCGGACAGTCATTGATCACAGCAGTGACAGCATATTTTGT
CGTTATGGGAGAGAGAACCGAGGCATTAGCCATTGGACGAAGAAGAAAGA
CTATGACAAAAGGAAAGGGCTTTGCTACAGGATTTGCTAATGTAAAGATT
GGTGATGTAAAGAAGGGCAGTCTCGATGGTCTGGAAACCGAGATGCCTTC
GCAGTACACTCGCAGTGATTCAGATGCATGGCAGGAAATTGAAGAATATG
AATCTAAGGTGGAGGACGAAACCAAACGGAAAGAAGCTTTTCTGACAAAG
TTCAGTCTGGCAACTTCTCTTTTTCGTATATCAATTATAGCGTTCGTGGC
AATATTTTCCTTATTCTACGAGGTAGCAGTGGTGAACTTTCTCTTTCAGC
AACAAAACCTCCAAATTACGAAAGACATCGAGCATTTGACTTTGTCAGAG
CTGAGCAGATATTCACTAGTACAAGATACAGCTATGGAAGCCATTTGGAA
CTTCAGAGTGAATCCTCGCAGAACGAAATTTGACGAAAGCGATAGGTTTC
AGATTCCATGGAAGCGCTGTCGAACTGGGCCAGAATGCTTTCATTGGGTT
CTCGATGAAAACAACCCTGTTCAGTTCTACGTAACGTATAACATCGAAGC
CATACATTTAACTGAAGCCGAAGCAGATTGCGATTTGGTCACTATATTTG
AAACGAAAGGTACAATCCACCGCTTTAATAGCGGGTGGTTGTTCAATGCA
CAAGTTCCAACTGAGAGGCGCAGAAAATTAGACCGTGAACTCGGGGGATT
GAAAATCAAGGGAACGTTGTCTCATTTGCTTGGTGGAAGACGAGAGGGGT
GTGCACCAACCACGATCTCCAGCATAACGTTCGTGATTATTCTTCTTCCT
GTTTCGTTCCTTGTTCTTCCGCCTCTGCTTTTCTCGGCTATGGTTGCATT
GAGCTGGAGGCGGAATAATACAACAGAGAACAACGCATCGACCTTGCTTC
CTGAGTGA