Gcaud4005.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud4005.t1
Unique NameGcaud4005.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_109_length_49829_cov_5.154108contigNODE_109_length_49829_cov_5.154108:27061..27496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LL81
Preferred nameZNRD1
PFAMsRNA_POL_M_15KD,TFIIS_C
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03000
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000122,GO:0000428,GO:0001085,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045815,GO:0045892,GO:0045934,GO:0046483,GO:0048518,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0055029,GO:0060255,GO:0061629,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue1.45e-23
EggNOG OGsCOG1594@1|root,KOG2907@2759|Eukaryota
Descriptiontermination of RNA polymerase I transcription
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud4005Gcaud4005Gracilaria caudata M_176_S67 malegeneNODE_109_length_49829_cov_5.154108 27061..27496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4005.t1Gcaud4005.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_109_length_49829_cov_5.154108 27061..27496 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4005.t1.start1Gcaud4005.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_109_length_49829_cov_5.154108 27061..27063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4005.t1.CDS1Gcaud4005.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_109_length_49829_cov_5.154108 27061..27157 +
Gcaud4005.t1.CDS2Gcaud4005.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_109_length_49829_cov_5.154108 27231..27496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4005.t1.exon1Gcaud4005.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_109_length_49829_cov_5.154108 27061..27157 +
Gcaud4005.t1.exon2Gcaud4005.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_109_length_49829_cov_5.154108 27231..27496 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4005.t1.intron1Gcaud4005.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_109_length_49829_cov_5.154108 27158..27230 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4005.t1.stop1Gcaud4005.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_109_length_49829_cov_5.154108 27494..27496 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud4005.t1 ID=Gcaud4005.t1|Name=Gcaud4005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=121bp
MEKILFCPFCGAFREIFDSGDKKVKCQHCNKAMNLSDLTSQLQKTVEILP
IERSELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLRGVDEG
QTIFYTCLNKQCGHKFTVHS*
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spliced messenger RNA

>Gcaud4005.t1 ID=Gcaud4005.t1|Name=Gcaud4005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp|location=Sequence derived from alignment at NODE_109_length_49829_cov_5.154108:27061..27496+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAGATTCTGTTCTGTCCCTTCTGCGGAGCGTTTCGTGAAATCTT
CGACAGCGGTGATAAGAAAGTCAAATGCCAACATTGCAACAAAGCAATGA
ATCTGAGTGACCTAACTTCTCAGCTACAAAAAACTGTTGAAATCTTGCCG
ATTGAGCGTTCGGAACTTCTTCTCCAACTATATGGACAGACAGCCGAAAA
GCGCAAAGCTGATGATGCAGTTATCGACGAGGATTGTCCTAAATGTGGCC
ATCCAAAGCTTTCTTTCACAACTGCGCAGTTGCGAGGTGTAGACGAGGGT
CAGACCATTTTTTACACATGTCTCAATAAGCAGTGCGGCCATAAATTCAC
TGTCCATTCTTGA
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protein sequence of Gcaud4005.t1

>Gcaud4005.t1 ID=Gcaud4005.t1|Name=Gcaud4005.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=121bp
MEKILFCPFCGAFREIFDSGDKKVKCQHCNKAMNLSDLTSQLQKTVEILP
IERSELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLRGVDEG
QTIFYTCLNKQCGHKFTVHS*
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mRNA from alignment at NODE_109_length_49829_cov_5.154108:27061..27496+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud4005.t1 ID=Gcaud4005.t1|Name=Gcaud4005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=436bp|location=Sequence derived from alignment at NODE_109_length_49829_cov_5.154108:27061..27496+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAGATTCTGTTCTGTCCCTTCTGCGGAGCGTTTCGTGAAATCTT
CGACAGCGGTGATAAGAAAGTCAAATGCCAACATTGCAACAAAGCAAGTA
AGCTTCAACATCACAATCCTTCGACACGCGACTCACGCTGACCGATGTTG
GAATCCTGCTTACCTGCCAGTGAATCTGAGTGACCTAACTTCTCAGCTAC
AAAAAACTGTTGAAATCTTGCCGATTGAGCGTTCGGAACTTCTTCTCCAA
CTATATGGACAGACAGCCGAAAAGCGCAAAGCTGATGATGCAGTTATCGA
CGAGGATTGTCCTAAATGTGGCCATCCAAAGCTTTCTTTCACAACTGCGC
AGTTGCGAGGTGTAGACGAGGGTCAGACCATTTTTTACACATGTCTCAAT
AAGCAGTGCGGCCATAAATTCACTGTCCATTCTTGA
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Coding sequence (CDS) from alignment at NODE_109_length_49829_cov_5.154108:27061..27496+

>Gcaud4005.t1 ID=Gcaud4005.t1|Name=Gcaud4005.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=363bp|location=Sequence derived from alignment at NODE_109_length_49829_cov_5.154108:27061..27496+ (Gracilaria caudata M_176_S67 male)
ATGGAGAAGATTCTGTTCTGTCCCTTCTGCGGAGCGTTTCGTGAAATCTT
CGACAGCGGTGATAAGAAAGTCAAATGCCAACATTGCAACAAAGCAATGA
ATCTGAGTGACCTAACTTCTCAGCTACAAAAAACTGTTGAAATCTTGCCG
ATTGAGCGTTCGGAACTTCTTCTCCAACTATATGGACAGACAGCCGAAAA
GCGCAAAGCTGATGATGCAGTTATCGACGAGGATTGTCCTAAATGTGGCC
ATCCAAAGCTTTCTTTCACAACTGCGCAGTTGCGAGGTGTAGACGAGGGT
CAGACCATTTTTTACACATGTCTCAATAAGCAGTGCGGCCATAAATTCAC
TGTCCATTCTTGA
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