Gcaud3968.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3968.t1
Unique NameGcaud3968.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length89
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_579_length_21548_cov_4.637694contigNODE_579_length_21548_cov_4.637694:1874..3375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3968Gcaud3968Gracilaria caudata M_176_S67 malegeneNODE_579_length_21548_cov_4.637694 1874..3375 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3968.t1Gcaud3968.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_579_length_21548_cov_4.637694 1874..3375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3968.t1.CDS1Gcaud3968.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_579_length_21548_cov_4.637694 1874..1930 +
Gcaud3968.t1.CDS2Gcaud3968.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_579_length_21548_cov_4.637694 2058..2150 +
Gcaud3968.t1.CDS3Gcaud3968.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_579_length_21548_cov_4.637694 3173..3279 +
Gcaud3968.t1.CDS4Gcaud3968.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_579_length_21548_cov_4.637694 3367..3375 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3968.t1.exon1Gcaud3968.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_579_length_21548_cov_4.637694 1874..1930 +
Gcaud3968.t1.exon2Gcaud3968.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_579_length_21548_cov_4.637694 2058..2150 +
Gcaud3968.t1.exon3Gcaud3968.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_579_length_21548_cov_4.637694 3173..3279 +
Gcaud3968.t1.exon4Gcaud3968.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_579_length_21548_cov_4.637694 3367..3375 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3968.t1.intron1Gcaud3968.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_579_length_21548_cov_4.637694 1931..2057 +
Gcaud3968.t1.intron2Gcaud3968.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_579_length_21548_cov_4.637694 2151..3172 +
Gcaud3968.t1.intron3Gcaud3968.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_579_length_21548_cov_4.637694 3280..3366 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3968.t1.stop1Gcaud3968.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_579_length_21548_cov_4.637694 3373..3375 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3968.t1 ID=Gcaud3968.t1|Name=Gcaud3968.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=89bp
XSPDFSAKIAHTAFHTLSEGATVQSQSQPSRPPTPAPHRLNSLSSSHVLL
TPAAGQIAIKAESSPFIPSSPSLPPAPYILVNAFYPAF*
back to top

spliced messenger RNA

>Gcaud3968.t1 ID=Gcaud3968.t1|Name=Gcaud3968.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp|location=Sequence derived from alignment at NODE_579_length_21548_cov_4.637694:1874..3375+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTTCTCCAGACTTCAGTGCCAAGATCGCACACACCGCTTTTCACACACTT
TCGGAAGGAGCTACTGTACAGTCACAATCACAGCCATCACGACCTCCTAC
TCCCGCACCGCATCGGCTCAATAGTCTTTCTTCCTCGCATGTATTGCTCA
CACCTGCCGCCGGCCAAATTGCTATAAAAGCCGAATCGTCTCCCTTCATT
CCGTCTTCCCCCTctcttccgcccgccccatatatcctcgtaaatgcctt
ctacccggctttctaa
back to top

protein sequence of Gcaud3968.t1

>Gcaud3968.t1 ID=Gcaud3968.t1|Name=Gcaud3968.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=89bp
XSPDFSAKIAHTAFHTLSEGATVQSQSQPSRPPTPAPHRLNSLSSSHVLL
TPAAGQIAIKAESSPFIPSSPSLPPAPYILVNAFYPAF*
back to top

mRNA from alignment at NODE_579_length_21548_cov_4.637694:1874..3375+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3968.t1 ID=Gcaud3968.t1|Name=Gcaud3968.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1502bp|location=Sequence derived from alignment at NODE_579_length_21548_cov_4.637694:1874..3375+ (Gracilaria caudata M_176_S67 male)
CTTCTCCAGACTTCAGTGCCAAGATCGCACACACCGCTTTTCACACACTT
TCGGAAGGTAAGAAGGTAAGAGGTTTTTCCTGGGGATATCTGCGTGTTGA
TATGCTGAATTTTGAGTGAGTCAATCTATGTTTGCGACCGCCTGCGACTG
TAAACAAAATGGCGAACTATATTGCCTTGCCAAGGAGCTACTGTACAGTC
ACAATCACAGCCATCACGACCTCCTACTCCCGCACCGCATCGGCTCAATA
GTCTTTCTTCCTCGCATGTATTGCTCAGTCGCACATGCCTCTTCTATTGC
AATTCACCGCAACTCTCGTGCCTCAACATTCGCCCAGCCCAATTTGGAAC
AAACCATTCGCCAGCGACACTTAGTCATCCCCCCTCACCCGAAGATTCCA
CGATGACACTCGCAATTTCTCTCGTTTAGTGGACTCAGTAGTTTAGCGAT
AATTGCCATCTCAAAAGTCCGCGGGGCACCCCTGAGTCAGTTTGCGACTG
AAAATCTCCGACAAGCGTCACATCTCCCGGGGACTGCTCGTCCACGCTAA
TCCTATTTGAAACAATCCGCGATGCATATCAACACTTCTCGTATTCCTGT
AGTTATTGTGCGCAGAGTAATCCAAGAGTAGTCACGGCTGCCATTTGGCA
AAAGATGAAACAACTTCTGCTGGCGGAGCACTCTCTTCGACATGCCATTG
CTGTTTTGGATCGAATCAAACACGTCCAATTCAGCTACGCATATCGGCAT
ATAACTTACGCGAGTTATTCTCTTTCATTATCGCTCATTTCTGCCCTCTC
GTCTTCCGCCCTGGCGAGAATTCCACTTTTCTCCAACACTCTCGCTCTCT
TCAAACATTTTGATATGCACTGGTGCACTGAAAAGCTTTCAAGTGTCGGA
CATGAGTACATTGGCACTCACAAATTTGTAGTCCATCTCTACAAGGTTGA
TGCATTCCCATCTTCTGTCAAATCAGACCTTGTAGTTCACTTTCAACTCA
TCATGGTCATTTGCTTTTGTCGCTAAACATTCCGGAGAAGGTGGCCATCG
ATGCGTTTGGCCAAAACCGTGGTATCGGAAACGAGGCATAGTAATACTTG
CGCTATCCTTTCGGTACAACGGTTAGGATAATCGGGATGCTCGAACGTTT
ACACATCTGTGAATGGAGCATTCTAGCAAACGCCAAGAAATGCAAGCTTT
AAAAGTCACAGCAGCACCGATGGTACTTGTCACGTAATCGGGTCTAATTC
GAGTGTCACACAACTCAACTGAACTCCCCTTCCCGAATTCAATTGGCAGC
ACCTGCCGCCGGCCAAATTGCTATAAAAGCCGAATCGTCTCCCTTCATTC
CGTCTTCCCCCTctcttccgcccgccccatatatcctcgtaaatgccttc
tacccggtaagttctccttcttcacgtttcctctaccttccttcatgagg
ttgacactctgttcctgttttccttccgtcgttttgcgtacaggctttct
aa
back to top

Coding sequence (CDS) from alignment at NODE_579_length_21548_cov_4.637694:1874..3375+

>Gcaud3968.t1 ID=Gcaud3968.t1|Name=Gcaud3968.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=266bp|location=Sequence derived from alignment at NODE_579_length_21548_cov_4.637694:1874..3375+ (Gracilaria caudata M_176_S67 male)
CTTCTCCAGACTTCAGTGCCAAGATCGCACACACCGCTTTTCACACACTT
TCGGAAGGAGCTACTGTACAGTCACAATCACAGCCATCACGACCTCCTAC
TCCCGCACCGCATCGGCTCAATAGTCTTTCTTCCTCGCATGTATTGCTCA
CACCTGCCGCCGGCCAAATTGCTATAAAAGCCGAATCGTCTCCCTTCATT
CCGTCTTCCCCCTctcttccgcccgccccatatatcctcgtaaatgcctt
ctacccggctttctaa
back to top