Gcaud3953.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3953.t1
Unique NameGcaud3953.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_11897_length_466_cov_5.186667contigNODE_11897_length_466_cov_5.186667:2..362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1094980.Mpsy_1379
PFAMsAcetyltransf_1
Max annot lvl224756|Methanomicrobia
KEGG koko:K03828
Evalue2.42e-05
EggNOG OGsCOG0454@1|root,arCOG00851@2157|Archaea,2Y4HC@28890|Euryarchaeota,2NB6E@224756|Methanomicrobia
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3953Gcaud3953Gracilaria caudata M_176_S67 malegeneNODE_11897_length_466_cov_5.186667 2..362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3953.t1.CDS1Gcaud3953.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_11897_length_466_cov_5.186667 2..362 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3953.t1.exon1Gcaud3953.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_11897_length_466_cov_5.186667 2..362 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3953.t1.start1Gcaud3953.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_11897_length_466_cov_5.186667 360..362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3953.t1Gcaud3953.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_11897_length_466_cov_5.186667 2..362 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3953.t1 ID=Gcaud3953.t1|Name=Gcaud3953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=121bp
MNQNREEATESLNRKRITTLIKNTEPQFDDLDDFLCVQNGGKLFVALDDR
ERIVGMLAIKRTDEDIETNSAELTRISVAKEWRRKGLRRAVFDHAIDYAL
KNFSTARFYLITLSSVAPAMX
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spliced messenger RNA

>Gcaud3953.t1 ID=Gcaud3953.t1|Name=Gcaud3953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp|location=Sequence derived from alignment at NODE_11897_length_466_cov_5.186667:2..362- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCAAAACAGAGAGGAGGCAACAGAGAGCCTTAACCGCAAAAGGAT
AACGACTCTGATCAAGAACACAGAACCTCAGTTTGATGATCTAGACGACT
TTCTCTGTGTCCAGAACGGCGGGAAACTGTTTGTCGCTTTAGATGATCGT
GAAAGGATTGTTGGAATGCTTGCAATAAAGAGAACTGATGAAGATATTGA
GACGAACTCTGCAGAACTTACGAGAATATCTGTCGCCAAGGAATGGCGAA
GGAAAGGCTTACGCCGTGCAGTCTTTGATCATGCAATTGACTATGCTCTG
AAGAACTTCAGCACTGCAAGATTCTATCTCATAACTTTGAGCTCAGTGGC
TCCAGCTATGA
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protein sequence of Gcaud3953.t1

>Gcaud3953.t1 ID=Gcaud3953.t1|Name=Gcaud3953.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=121bp
MNQNREEATESLNRKRITTLIKNTEPQFDDLDDFLCVQNGGKLFVALDDR
ERIVGMLAIKRTDEDIETNSAELTRISVAKEWRRKGLRRAVFDHAIDYAL
KNFSTARFYLITLSSVAPAMX
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mRNA from alignment at NODE_11897_length_466_cov_5.186667:2..362-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3953.t1 ID=Gcaud3953.t1|Name=Gcaud3953.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp|location=Sequence derived from alignment at NODE_11897_length_466_cov_5.186667:2..362- (Gracilaria caudata M_176_S67 male)
ATGAATCAAAACAGAGAGGAGGCAACAGAGAGCCTTAACCGCAAAAGGAT
AACGACTCTGATCAAGAACACAGAACCTCAGTTTGATGATCTAGACGACT
TTCTCTGTGTCCAGAACGGCGGGAAACTGTTTGTCGCTTTAGATGATCGT
GAAAGGATTGTTGGAATGCTTGCAATAAAGAGAACTGATGAAGATATTGA
GACGAACTCTGCAGAACTTACGAGAATATCTGTCGCCAAGGAATGGCGAA
GGAAAGGCTTACGCCGTGCAGTCTTTGATCATGCAATTGACTATGCTCTG
AAGAACTTCAGCACTGCAAGATTCTATCTCATAACTTTGAGCTCAGTGGC
TCCAGCTATGA
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Coding sequence (CDS) from alignment at NODE_11897_length_466_cov_5.186667:2..362-

>Gcaud3953.t1 ID=Gcaud3953.t1|Name=Gcaud3953.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=361bp|location=Sequence derived from alignment at NODE_11897_length_466_cov_5.186667:2..362- (Gracilaria caudata M_176_S67 male)
ATGAATCAAAACAGAGAGGAGGCAACAGAGAGCCTTAACCGCAAAAGGAT
AACGACTCTGATCAAGAACACAGAACCTCAGTTTGATGATCTAGACGACT
TTCTCTGTGTCCAGAACGGCGGGAAACTGTTTGTCGCTTTAGATGATCGT
GAAAGGATTGTTGGAATGCTTGCAATAAAGAGAACTGATGAAGATATTGA
GACGAACTCTGCAGAACTTACGAGAATATCTGTCGCCAAGGAATGGCGAA
GGAAAGGCTTACGCCGTGCAGTCTTTGATCATGCAATTGACTATGCTCTG
AAGAACTTCAGCACTGCAAGATTCTATCTCATAACTTTGAGCTCAGTGGC
TCCAGCTATGA
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