Gcaud3914.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3914.t1
Unique NameGcaud3914.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_169_length_41188_cov_4.653503contigNODE_169_length_41188_cov_4.653503:3520..4726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705912.1
Preferred nameATP6V1C2
PFAMsV-ATPase_C
Max annot lvl2759|Eukaryota
KEGG koko:K02148
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04145,ko04150,ko04721,ko04966,ko05110,ko05120,ko05323,map00190,map01100,map04145,map04150,map04721,map04966,map05110,map05120,map05323
KEGG ModuleM00160
GOsGO:0000003,GO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0000902,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009507,GO:0009536,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009826,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019953,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030177,GO:0030641,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032989,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033572,GO:0034220,GO:0036442,GO:0040007,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045177,GO:0045184,GO:0045851,GO:0046961,GO:0046983,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060560,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Evalue2.17e-81
EggNOG OGsCOG5127@1|root,KOG2909@2759|Eukaryota
Descriptionproton-exporting ATPase activity, phosphorylative mechanism
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3914Gcaud3914Gracilaria caudata M_176_S67 malegeneNODE_169_length_41188_cov_4.653503 3520..4726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3914.t1Gcaud3914.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_169_length_41188_cov_4.653503 3520..4726 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3914.t1.stop1Gcaud3914.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_169_length_41188_cov_4.653503 3520..3522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3914.t1.CDS1Gcaud3914.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_169_length_41188_cov_4.653503 3520..3532 -
Gcaud3914.t1.CDS2Gcaud3914.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_169_length_41188_cov_4.653503 3636..4726 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3914.t1.exon1Gcaud3914.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_169_length_41188_cov_4.653503 3520..3532 -
Gcaud3914.t1.exon2Gcaud3914.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_169_length_41188_cov_4.653503 3636..4726 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3914.t1.intron1Gcaud3914.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_169_length_41188_cov_4.653503 3533..3635 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3914.t1.start1Gcaud3914.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_169_length_41188_cov_4.653503 4724..4726 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3914.t1 ID=Gcaud3914.t1|Name=Gcaud3914.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MSIRLWVVSAPNGEQHSAFDSMKNSLQNKSALCDAYLLQLPQFRVGTLDS
LIAVADAISRDDKTLEATVERVLRQYRDLVRSSSAVPLVDGIDILEYVTD
FLWDEAKFTPHDSLSEIRSTIVKQVMSLEEEMKIRLTDYTTTRQALTSIE
RRSQGNLMTRALSTIVEAHHVVETEHLTTVFVVFPSYNETEFLACYEDLA
KFVVPRSAKLVSSDQEYMLYAVTVFKKNVDEFKTAARERRYTVRDFKFDP
NAKTKSAAEEERLKLDDEEQLESFTKWAETAFAETFIAMVHLKALRSFAE
SVLRYGLPVDFEVALLAPKGKAETRLRQELGKMFGHLGGSWAAISESDEV
TNIPGIIADRDFYPSRF*
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spliced messenger RNA

>Gcaud3914.t1 ID=Gcaud3914.t1|Name=Gcaud3914.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_169_length_41188_cov_4.653503:3520..4726- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTATTCGCCTGTGGGTCGTCTCCGCCCCCAATGGCGAGCAGCATTC
GGCCTTCGACTCCATGAAGAATTCGCTTCAGAACAAATCCGCTCTTTGCG
ATGCATACCTCCTTCAGCTCCCCCAATTTCGGGTTGGAACTCTCGATTCG
CTCATTGCCGTCGCCGATGCCATTTCGCGAGATGACAAGACCTTAGAAGC
AACTGTCGAGCGCGTCCTGCGCCAATATCGCGATCTCGTGCGTTCCTCCT
CTGCCGTACCGCTTGTGGACGGGATCGATATTCTAGAATACGTCACAGAT
TTTTTGTGGGACGAAGCCAAGTTTACCCCCCACGATTCTTTGTCCGAGAT
TAGATCTACCATTGTGAAGCAAGTCATGAGTCTCGAAGAGGAGATGAAAA
TCAGGCTCACTGATTATACCACTACCCGTCAAGCGCTCACTTCTATTGAG
CGTCGATCTCAGGGAAATCTCATGACGCGCGCCCTATCTACTATTGTGGA
AGCCCATCACGTCGTTGAAACCGAACATTTGACCACAGTGTTTGTCGTCT
TCCCATCTTATAACGAAACTGAATTCCTTGCCTGTTACGAAGATTTGGCC
AAGTTTGTTGTTCCTCGTTCAGCCAAGCTTGTTTCCTCGGACCAGGAGTA
CATGCTATATGCTGTTACTGTCTTTAAGAAGAACGTTGACGAGTTTAAGA
CTGCCGCAAGGGAGCGGAGATACACAGTTCGCGATTTTAAGTTCGATCCA
AACGCAAAGACCAAGTCAGCTGCGGAAGAGGAGCGTCTCAAACTTGATGA
TGAAGAACAGCTCGAAAGCTTCACCAAATGGGCGGAAACCGCCTTTGCGG
AAACCTTTATTGCCATGGTTCATCTTAAAGCACTGCGCTCGTTCGCTGAA
AGTGTGCTGCGCTATGGTCTCCCTGTCGATTTTGAAGTCGCACTACTAGC
TCCCAAGGGCAAGGCTGAAACACGCTTACGTCAAGAACTCGGCAAAATGT
TTGGTCACTTGGGTGGATCATGGGCTGCTATTTCAGAGTCAGATGAAGTA
ACTAACATTCCGGGCATTATCGCCGATAGAGACTTTTATCCAAGTCGATT
CTAA
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protein sequence of Gcaud3914.t1

>Gcaud3914.t1 ID=Gcaud3914.t1|Name=Gcaud3914.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MSIRLWVVSAPNGEQHSAFDSMKNSLQNKSALCDAYLLQLPQFRVGTLDS
LIAVADAISRDDKTLEATVERVLRQYRDLVRSSSAVPLVDGIDILEYVTD
FLWDEAKFTPHDSLSEIRSTIVKQVMSLEEEMKIRLTDYTTTRQALTSIE
RRSQGNLMTRALSTIVEAHHVVETEHLTTVFVVFPSYNETEFLACYEDLA
KFVVPRSAKLVSSDQEYMLYAVTVFKKNVDEFKTAARERRYTVRDFKFDP
NAKTKSAAEEERLKLDDEEQLESFTKWAETAFAETFIAMVHLKALRSFAE
SVLRYGLPVDFEVALLAPKGKAETRLRQELGKMFGHLGGSWAAISESDEV
TNIPGIIADRDFYPSRF*
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mRNA from alignment at NODE_169_length_41188_cov_4.653503:3520..4726-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3914.t1 ID=Gcaud3914.t1|Name=Gcaud3914.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1207bp|location=Sequence derived from alignment at NODE_169_length_41188_cov_4.653503:3520..4726- (Gracilaria caudata M_176_S67 male)
ATGTCTATTCGCCTGTGGGTCGTCTCCGCCCCCAATGGCGAGCAGCATTC
GGCCTTCGACTCCATGAAGAATTCGCTTCAGAACAAATCCGCTCTTTGCG
ATGCATACCTCCTTCAGCTCCCCCAATTTCGGGTTGGAACTCTCGATTCG
CTCATTGCCGTCGCCGATGCCATTTCGCGAGATGACAAGACCTTAGAAGC
AACTGTCGAGCGCGTCCTGCGCCAATATCGCGATCTCGTGCGTTCCTCCT
CTGCCGTACCGCTTGTGGACGGGATCGATATTCTAGAATACGTCACAGAT
TTTTTGTGGGACGAAGCCAAGTTTACCCCCCACGATTCTTTGTCCGAGAT
TAGATCTACCATTGTGAAGCAAGTCATGAGTCTCGAAGAGGAGATGAAAA
TCAGGCTCACTGATTATACCACTACCCGTCAAGCGCTCACTTCTATTGAG
CGTCGATCTCAGGGAAATCTCATGACGCGCGCCCTATCTACTATTGTGGA
AGCCCATCACGTCGTTGAAACCGAACATTTGACCACAGTGTTTGTCGTCT
TCCCATCTTATAACGAAACTGAATTCCTTGCCTGTTACGAAGATTTGGCC
AAGTTTGTTGTTCCTCGTTCAGCCAAGCTTGTTTCCTCGGACCAGGAGTA
CATGCTATATGCTGTTACTGTCTTTAAGAAGAACGTTGACGAGTTTAAGA
CTGCCGCAAGGGAGCGGAGATACACAGTTCGCGATTTTAAGTTCGATCCA
AACGCAAAGACCAAGTCAGCTGCGGAAGAGGAGCGTCTCAAACTTGATGA
TGAAGAACAGCTCGAAAGCTTCACCAAATGGGCGGAAACCGCCTTTGCGG
AAACCTTTATTGCCATGGTTCATCTTAAAGCACTGCGCTCGTTCGCTGAA
AGTGTGCTGCGCTATGGTCTCCCTGTCGATTTTGAAGTCGCACTACTAGC
TCCCAAGGGCAAGGCTGAAACACGCTTACGTCAAGAACTCGGCAAAATGT
TTGGTCACTTGGGTGGATCATGGGCTGCTATTTCAGAGTCAGATGAAGTA
ACTAACATTCCGGGCATTATCGCCGATAGAGACTTTTATCCGTATGTCTA
TTTTGAGTTGCCGCTTCCGATCGGCACCAGCTCTTCTTGAATATGCTAAC
CTATCACTCACAAATTAAAACTCGAATCTATCGATTGCTCGTAGAAGTCG
ATTCTAA
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Coding sequence (CDS) from alignment at NODE_169_length_41188_cov_4.653503:3520..4726-

>Gcaud3914.t1 ID=Gcaud3914.t1|Name=Gcaud3914.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_169_length_41188_cov_4.653503:3520..4726- (Gracilaria caudata M_176_S67 male)
ATGTCTATTCGCCTGTGGGTCGTCTCCGCCCCCAATGGCGAGCAGCATTC
GGCCTTCGACTCCATGAAGAATTCGCTTCAGAACAAATCCGCTCTTTGCG
ATGCATACCTCCTTCAGCTCCCCCAATTTCGGGTTGGAACTCTCGATTCG
CTCATTGCCGTCGCCGATGCCATTTCGCGAGATGACAAGACCTTAGAAGC
AACTGTCGAGCGCGTCCTGCGCCAATATCGCGATCTCGTGCGTTCCTCCT
CTGCCGTACCGCTTGTGGACGGGATCGATATTCTAGAATACGTCACAGAT
TTTTTGTGGGACGAAGCCAAGTTTACCCCCCACGATTCTTTGTCCGAGAT
TAGATCTACCATTGTGAAGCAAGTCATGAGTCTCGAAGAGGAGATGAAAA
TCAGGCTCACTGATTATACCACTACCCGTCAAGCGCTCACTTCTATTGAG
CGTCGATCTCAGGGAAATCTCATGACGCGCGCCCTATCTACTATTGTGGA
AGCCCATCACGTCGTTGAAACCGAACATTTGACCACAGTGTTTGTCGTCT
TCCCATCTTATAACGAAACTGAATTCCTTGCCTGTTACGAAGATTTGGCC
AAGTTTGTTGTTCCTCGTTCAGCCAAGCTTGTTTCCTCGGACCAGGAGTA
CATGCTATATGCTGTTACTGTCTTTAAGAAGAACGTTGACGAGTTTAAGA
CTGCCGCAAGGGAGCGGAGATACACAGTTCGCGATTTTAAGTTCGATCCA
AACGCAAAGACCAAGTCAGCTGCGGAAGAGGAGCGTCTCAAACTTGATGA
TGAAGAACAGCTCGAAAGCTTCACCAAATGGGCGGAAACCGCCTTTGCGG
AAACCTTTATTGCCATGGTTCATCTTAAAGCACTGCGCTCGTTCGCTGAA
AGTGTGCTGCGCTATGGTCTCCCTGTCGATTTTGAAGTCGCACTACTAGC
TCCCAAGGGCAAGGCTGAAACACGCTTACGTCAAGAACTCGGCAAAATGT
TTGGTCACTTGGGTGGATCATGGGCTGCTATTTCAGAGTCAGATGAAGTA
ACTAACATTCCGGGCATTATCGCCGATAGAGACTTTTATCCAAGTCGATT
CTAA
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