Gcaud3903.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3903.t1
Unique NameGcaud3903.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1038_length_14777_cov_4.481070contigNODE_1038_length_14777_cov_4.481070:5682..6160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP09049
PFAMsComplex1_LYR
Max annot lvl3041|Chlorophyta
KEGG koko:K22069
Evalue6.21e-05
EggNOG OGs2DISQ@1|root,2SD8U@2759|Eukaryota,37XP1@33090|Viridiplantae,34ITC@3041|Chlorophyta
DescriptionBelongs to the complex I LYR family
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3903Gcaud3903Gracilaria caudata M_176_S67 malegeneNODE_1038_length_14777_cov_4.481070 5682..6160 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3903.t1Gcaud3903.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1038_length_14777_cov_4.481070 5682..6160 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3903.t1.start1Gcaud3903.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1038_length_14777_cov_4.481070 5682..5684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3903.t1.CDS1Gcaud3903.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1038_length_14777_cov_4.481070 5682..5796 +
Gcaud3903.t1.CDS2Gcaud3903.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1038_length_14777_cov_4.481070 6018..6160 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3903.t1.exon1Gcaud3903.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1038_length_14777_cov_4.481070 5682..5796 +
Gcaud3903.t1.exon2Gcaud3903.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1038_length_14777_cov_4.481070 6018..6160 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3903.t1.intron1Gcaud3903.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1038_length_14777_cov_4.481070 5797..6017 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3903.t1.stop1Gcaud3903.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1038_length_14777_cov_4.481070 6158..6160 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3903.t1 ID=Gcaud3903.t1|Name=Gcaud3903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=86bp
MTAAPSSKRVLSLYRGLLRAVRYYPSKKRDSLALAIKEEFREKRNISGEQ
LEKALWLGQMELQRLQKWVPTSKQMADGKDMDIKL*
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spliced messenger RNA

>Gcaud3903.t1 ID=Gcaud3903.t1|Name=Gcaud3903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp|location=Sequence derived from alignment at NODE_1038_length_14777_cov_4.481070:5682..6160+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaccgctgcaccgTCGTCCAAGCGCGTTCTCTCTTTGTATCGAGGCCT
TCTCCGCGCTGTGCGCTATTATCCCAGCAAGAAGAGAGATTCCCTGGCGC
TGGCCATTAAAGAAGAATTCAGGGAGAAGCGCAATATTTCGGGCGAGCAG
CTCGAGAAAGCTCTGTGGCTGGGCCAAATGGAGCTGCAGCGCCTGCAGAA
ATGGGTCCCCACAAGTAAACAAATGGCGGATGGTAAGGATATGGACATCA
AATTGTAG
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protein sequence of Gcaud3903.t1

>Gcaud3903.t1 ID=Gcaud3903.t1|Name=Gcaud3903.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=86bp
MTAAPSSKRVLSLYRGLLRAVRYYPSKKRDSLALAIKEEFREKRNISGEQ
LEKALWLGQMELQRLQKWVPTSKQMADGKDMDIKL*
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mRNA from alignment at NODE_1038_length_14777_cov_4.481070:5682..6160+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3903.t1 ID=Gcaud3903.t1|Name=Gcaud3903.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=479bp|location=Sequence derived from alignment at NODE_1038_length_14777_cov_4.481070:5682..6160+ (Gracilaria caudata M_176_S67 male)
atgaccgctgcaccgTCGTCCAAGCGCGTTCTCTCTTTGTATCGAGGCCT
TCTCCGCGCTGTGCGCTATTATCCCAGCAAGAAGAGAGATTCCCTGGCGC
TGGCCATTAAAGAAGGTGCGTAATAACTTGCTCATTCTACCGATCACACA
TCTGCCGTCGAAATCGATCGTTAGCTTCACGTGTGCTTCACTTTAGAAAC
GATCGCCTCAGCACATTGAACTTCTCGGCTGCGCTTGTGGCCTCGGCCGC
GAATTTTTTCTCTTGTAACATCACGCTCTCTTCATTCTCAAAAGTATAAC
CTAACCGTCTGCGCTTTGGCTGCTATGTAACCATAGAATTCAGGGAGAAG
CGCAATATTTCGGGCGAGCAGCTCGAGAAAGCTCTGTGGCTGGGCCAAAT
GGAGCTGCAGCGCCTGCAGAAATGGGTCCCCACAAGTAAACAAATGGCGG
ATGGTAAGGATATGGACATCAAATTGTAG
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Coding sequence (CDS) from alignment at NODE_1038_length_14777_cov_4.481070:5682..6160+

>Gcaud3903.t1 ID=Gcaud3903.t1|Name=Gcaud3903.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=258bp|location=Sequence derived from alignment at NODE_1038_length_14777_cov_4.481070:5682..6160+ (Gracilaria caudata M_176_S67 male)
atgaccgctgcaccgTCGTCCAAGCGCGTTCTCTCTTTGTATCGAGGCCT
TCTCCGCGCTGTGCGCTATTATCCCAGCAAGAAGAGAGATTCCCTGGCGC
TGGCCATTAAAGAAGAATTCAGGGAGAAGCGCAATATTTCGGGCGAGCAG
CTCGAGAAAGCTCTGTGGCTGGGCCAAATGGAGCTGCAGCGCCTGCAGAA
ATGGGTCCCCACAAGTAAACAAATGGCGGATGGTAAGGATATGGACATCA
AATTGTAG
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