Gcaud3896.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3896.t1
Unique Name	Gcaud3896.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	518

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_54_length_62775_cov_4.630257	contig	NODE_54_length_62775_cov_4.630257:55274..57256 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703270.1
Preferred name	AVL9
PFAMs	Avl9,SPA
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005933,GO:0005934,GO:0005935,GO:0006810,GO:0006892,GO:0006928,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0016477,GO:0030427,GO:0031410,GO:0031982,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048193,GO:0048870,GO:0051179,GO:0051234,GO:0051674,GO:0055037,GO:0097708
Evalue	9.14e-60
EggNOG OGs	KOG3823@1\|root,KOG3823@2759\|Eukaryota
Description	cell migration
COG category	EH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3896	Gcaud3896	Gracilaria caudata M_176_S67 male	gene	NODE_54_length_62775_cov_4.630257 55274..57256 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3896.t1	Gcaud3896.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_54_length_62775_cov_4.630257 55274..57256 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3896.t1.stop1	Gcaud3896.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_54_length_62775_cov_4.630257 55274..55276 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3896.t1.CDS1	Gcaud3896.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_54_length_62775_cov_4.630257 55274..55654 -
Gcaud3896.t1.CDS2	Gcaud3896.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_54_length_62775_cov_4.630257 56084..57256 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3896.t1.exon1	Gcaud3896.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_54_length_62775_cov_4.630257 55274..55654 -
Gcaud3896.t1.exon2	Gcaud3896.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_54_length_62775_cov_4.630257 56084..57256 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3896.t1.intron1	Gcaud3896.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_54_length_62775_cov_4.630257 55655..56083 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3896.t1.start1	Gcaud3896.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_54_length_62775_cov_4.630257 57254..57256 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_54_length_62775_cov_4.630257:55274..57256-
coding sequence from alignment at NODE_54_length_62775_cov_4.630257:55274..57256-

mRNA sequence

>Gcaud3896.t1 ID=Gcaud3896.t1|Name=Gcaud3896.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=518bp
MTPPAQSPDTSIVAHVVVVGFHAQLGHRIEFAYPRLRGTPILRSPKISDT
SDISADVSPTISRRISAEYLKEYESQQRSGAWGTLPAEWAFMPLMALPDG
VHDHHQDLVFFTLPPDVHCVSCFRQVDAVDAKTHSASAAHLYEQGVAARG
SVQKSVVLLCRKPLFGVLSDRLVPAVRAYFDQADFARTDVLSSLYHSLNV
SLSRPSLNHADTLFHGLDLRAILRRLGPQMLAVIKLILLERRVVIYSQPV
HHASNAVIALASIFPGALDSISPTMPPLEAVEKYGAGFPLSLFSAQGRIV
LQPHAPLPLVSELIPNNVSNSCLLGTSHNVGLLLSSTAASAARKVASLRG
KSGTTPVERSRELNQSSSAPVGFATPEKNRKAVFLESSRSSFVRSWMTTR
NAGLWSRTCPVQPKMFLPPPKPEVDEALTEETLIPVDRVAAGLSGLRQNV
ADLGRFSSIVSAKAAEGLSSIFKRIEQEVGRMDIGGQPSPHTPASAGHVR
KSDTNTSESSRTKSAPR*

spliced messenger RNA

>Gcaud3896.t1 ID=Gcaud3896.t1|Name=Gcaud3896.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1554bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:55274..57256- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCACCTGCGCAATCTCCAGACACTTCCATCGTCGCCCATGTCGT
TGTAGTGGGATTCCACGCTCAGCTCGGTCATCGTATAGAATTCGCTTATC
CTCGTCTACGCGGCACCCCAATTCTACGCTCCCCAAAGATCTCGGACACT
TCTGACATTTCAGCTGATGTGTCGCCCACAATATCGCGCCGAATCAGTGC
TGAGTATTTGAAAGAGTATGAATCGCAGCAACGCTCAGGAGCATGGGGCA
CATTGCCCGCAGAATGGGCTTTTATGCCGCTTATGGCGCTTCCAGATGGC
GTTCACGACCACCATCAAGACTTGGTCTTCTTTACGCTACCTCCGGATGT
CCACTGCGTTTCATGCTTCCGCCAAGTTGATGCTGTTGATGCAAAGACCC
ATTCTGCCTCTGCCGCACATCTGTATGAACAAGGAGTCGCAGCCAGAGGA
TCCGTACAAAAGTCTGTCGTTCTTCTTTGCAGAAAACCATTGTTTGGAGT
ACTTTCTGATCGTTTGGTACCTGCGGTACGCGCGTATTTTGACCAAGCGG
ACTTTGCTCGAACTGATGTTCTTTCATCACTGTATCATTCGCTAAACGTG
TCGCTTTCGAGACCGTCTTTAAATCATGCCGATACCTTATTTCATGGACT
TGACTTGCGAGCTATACTTCGTCGTCTGGGACCACAAATGTTGGCTGTGA
TTAAGTTGATTCTCCTTGAACGCAGAGTAGTAATATACTCACAACCCGTC
CACCACGCCTCTAATGCTGTCATAGCACTAGCCTCAATTTTCCCAGGAGC
GCTGGACTCTATTTCGCCAACTATGCCTCCTCTTGAAGCCGTTGAGAAAT
ACGGCGCTGGCTTCCCGCTTTCTCTTTTTTCTGCGCAAGGACGTATCGTT
TTGCAACCACATGCCCCGCTGCCTCTGGTTTCCGAGTTAATTCCGAACAA
TGTGTCAAATTCATGTTTGTTAGGCACTTCCCACAATGTCGGCCTTTTGT
TATCCTCTACAGCCGCGTCGGCGGCAAGAAAAGTGGCAAGCTTGAGGGGG
AAATCAGGGACTACGCCAGTAGAGAGATCGCGCGAATTGAACCAGTCTAG
CTCAGCGCCAGTTGGATTTGCTACTCCTGAGAAAAATCGGAAAGCGGTGT
TCTTAGAGAGCTCTAGAAGTTCGTTTGTGCGCTCATGGATGACAACGCGA
AACGCGGGATTATGGTCGAGAACGTGTCCTGTGCAACCAAAAATGTTCCT
TCCGCCTCCGAAACCAGAAGTAGATGAGGCTCTTACAGAAGAAACTCTGA
TACCTGTGGACAGGGTGGCGGCTGGTTTGTCAGGCTTGAGGCAAAATGTA
GCTGACTTAGGACGTTTTTCGAGTATTGTCTCAGCCAAGGCTGCAGAAGG
ATTGTCCAGTATCTTCAAACGTATTGAACAGGAGGTAGGAAGAATGGATA
TTGGAGGACAACCATCTCCGCACACACCGGCTTCTGCTGGGCATGTGAGA
AAGTCAGATACGAACACAAGCGAATCTTCTCGAACAAAGTCGGCGCCTCG
GTAG

protein sequence of Gcaud3896.t1

>Gcaud3896.t1 ID=Gcaud3896.t1|Name=Gcaud3896.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=518bp
MTPPAQSPDTSIVAHVVVVGFHAQLGHRIEFAYPRLRGTPILRSPKISDT
SDISADVSPTISRRISAEYLKEYESQQRSGAWGTLPAEWAFMPLMALPDG
VHDHHQDLVFFTLPPDVHCVSCFRQVDAVDAKTHSASAAHLYEQGVAARG
SVQKSVVLLCRKPLFGVLSDRLVPAVRAYFDQADFARTDVLSSLYHSLNV
SLSRPSLNHADTLFHGLDLRAILRRLGPQMLAVIKLILLERRVVIYSQPV
HHASNAVIALASIFPGALDSISPTMPPLEAVEKYGAGFPLSLFSAQGRIV
LQPHAPLPLVSELIPNNVSNSCLLGTSHNVGLLLSSTAASAARKVASLRG
KSGTTPVERSRELNQSSSAPVGFATPEKNRKAVFLESSRSSFVRSWMTTR
NAGLWSRTCPVQPKMFLPPPKPEVDEALTEETLIPVDRVAAGLSGLRQNV
ADLGRFSSIVSAKAAEGLSSIFKRIEQEVGRMDIGGQPSPHTPASAGHVR
KSDTNTSESSRTKSAPR*

mRNA from alignment at NODE_54_length_62775_cov_4.630257:55274..57256-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3896.t1 ID=Gcaud3896.t1|Name=Gcaud3896.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1983bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:55274..57256- (Gracilaria caudata M_176_S67 male)
ATGACGCCACCTGCGCAATCTCCAGACACTTCCATCGTCGCCCATGTCGT
TGTAGTGGGATTCCACGCTCAGCTCGGTCATCGTATAGAATTCGCTTATC
CTCGTCTACGCGGCACCCCAATTCTACGCTCCCCAAAGATCTCGGACACT
TCTGACATTTCAGCTGATGTGTCGCCCACAATATCGCGCCGAATCAGTGC
TGAGTATTTGAAAGAGTATGAATCGCAGCAACGCTCAGGAGCATGGGGCA
CATTGCCCGCAGAATGGGCTTTTATGCCGCTTATGGCGCTTCCAGATGGC
GTTCACGACCACCATCAAGACTTGGTCTTCTTTACGCTACCTCCGGATGT
CCACTGCGTTTCATGCTTCCGCCAAGTTGATGCTGTTGATGCAAAGACCC
ATTCTGCCTCTGCCGCACATCTGTATGAACAAGGAGTCGCAGCCAGAGGA
TCCGTACAAAAGTCTGTCGTTCTTCTTTGCAGAAAACCATTGTTTGGAGT
ACTTTCTGATCGTTTGGTACCTGCGGTACGCGCGTATTTTGACCAAGCGG
ACTTTGCTCGAACTGATGTTCTTTCATCACTGTATCATTCGCTAAACGTG
TCGCTTTCGAGACCGTCTTTAAATCATGCCGATACCTTATTTCATGGACT
TGACTTGCGAGCTATACTTCGTCGTCTGGGACCACAAATGTTGGCTGTGA
TTAAGTTGATTCTCCTTGAACGCAGAGTAGTAATATACTCACAACCCGTC
CACCACGCCTCTAATGCTGTCATAGCACTAGCCTCAATTTTCCCAGGAGC
GCTGGACTCTATTTCGCCAACTATGCCTCCTCTTGAAGCCGTTGAGAAAT
ACGGCGCTGGCTTCCCGCTTTCTCTTTTTTCTGCGCAAGGACGTATCGTT
TTGCAACCACATGCCCCGCTGCCTCTGGTTTCCGAGTTAATTCCGAACAA
TGTGTCAAATTCATGTTTGTTAGGCACTTCCCACAATGTCGGCCTTTTGT
TATCCTCTACAGCCGCGTCGGCGGCAAGAAAAGTGGCAAGCTTGAGGGGG
AAATCAGGGACTACGCCAGTAGAGAGATCGCGCGAATTGAACCAGTCTAG
CTCAGCGCCAGTTGGATTTGCTACTCCTGAGAAAAATCGGAAAGCGGTGT
TCTTAGAGAGCTCTAGAAGTTCGGTAAGTCCCTTTACCCCTATGACTCTA
CCAAGCGATCAAAAAACAGATTCTTCTCCTACATCAGAGCGCGGAAGCCG
GGGAGTTCCCATTGTTGACGCACTTGTCAACCTATCCAGTGGAAAGGTTT
CTGTTTCGGGAGTGCTTGAACCTCTCTGTCGGGTAACGAGGCAAGAGCGG
CGGTTCATGCGAGATTTGATGGTTTCTGCTGCAGCCACATCATCGGCGTC
TGTGTCCGCGTCAGGTGCTACAGGAACATTTGTCGGTTCCGACGACTACA
TCCGTGAACGTCTTCGACTGTATTTGAGCAACTTTCTGCTATCGGTTGCT
GCTGTTGACGGTGTTCGGGGTGGACCGCTAGCTGGGGAGACATATAGCGC
GGAAATGGTTAATGACTTTGACTTCTCCATGTTTGAACCGTACAATATTC
AGTTTGTGCGCTCATGGATGACAACGCGAAACGCGGGATTATGGTCGAGA
ACGTGTCCTGTGCAACCAAAAATGTTCCTTCCGCCTCCGAAACCAGAAGT
AGATGAGGCTCTTACAGAAGAAACTCTGATACCTGTGGACAGGGTGGCGG
CTGGTTTGTCAGGCTTGAGGCAAAATGTAGCTGACTTAGGACGTTTTTCG
AGTATTGTCTCAGCCAAGGCTGCAGAAGGATTGTCCAGTATCTTCAAACG
TATTGAACAGGAGGTAGGAAGAATGGATATTGGAGGACAACCATCTCCGC
ACACACCGGCTTCTGCTGGGCATGTGAGAAAGTCAGATACGAACACAAGC
GAATCTTCTCGAACAAAGTCGGCGCCTCGGTAG

Coding sequence (CDS) from alignment at NODE_54_length_62775_cov_4.630257:55274..57256-

>Gcaud3896.t1 ID=Gcaud3896.t1|Name=Gcaud3896.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1554bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:55274..57256- (Gracilaria caudata M_176_S67 male)
ATGACGCCACCTGCGCAATCTCCAGACACTTCCATCGTCGCCCATGTCGT
TGTAGTGGGATTCCACGCTCAGCTCGGTCATCGTATAGAATTCGCTTATC
CTCGTCTACGCGGCACCCCAATTCTACGCTCCCCAAAGATCTCGGACACT
TCTGACATTTCAGCTGATGTGTCGCCCACAATATCGCGCCGAATCAGTGC
TGAGTATTTGAAAGAGTATGAATCGCAGCAACGCTCAGGAGCATGGGGCA
CATTGCCCGCAGAATGGGCTTTTATGCCGCTTATGGCGCTTCCAGATGGC
GTTCACGACCACCATCAAGACTTGGTCTTCTTTACGCTACCTCCGGATGT
CCACTGCGTTTCATGCTTCCGCCAAGTTGATGCTGTTGATGCAAAGACCC
ATTCTGCCTCTGCCGCACATCTGTATGAACAAGGAGTCGCAGCCAGAGGA
TCCGTACAAAAGTCTGTCGTTCTTCTTTGCAGAAAACCATTGTTTGGAGT
ACTTTCTGATCGTTTGGTACCTGCGGTACGCGCGTATTTTGACCAAGCGG
ACTTTGCTCGAACTGATGTTCTTTCATCACTGTATCATTCGCTAAACGTG
TCGCTTTCGAGACCGTCTTTAAATCATGCCGATACCTTATTTCATGGACT
TGACTTGCGAGCTATACTTCGTCGTCTGGGACCACAAATGTTGGCTGTGA
TTAAGTTGATTCTCCTTGAACGCAGAGTAGTAATATACTCACAACCCGTC
CACCACGCCTCTAATGCTGTCATAGCACTAGCCTCAATTTTCCCAGGAGC
GCTGGACTCTATTTCGCCAACTATGCCTCCTCTTGAAGCCGTTGAGAAAT
ACGGCGCTGGCTTCCCGCTTTCTCTTTTTTCTGCGCAAGGACGTATCGTT
TTGCAACCACATGCCCCGCTGCCTCTGGTTTCCGAGTTAATTCCGAACAA
TGTGTCAAATTCATGTTTGTTAGGCACTTCCCACAATGTCGGCCTTTTGT
TATCCTCTACAGCCGCGTCGGCGGCAAGAAAAGTGGCAAGCTTGAGGGGG
AAATCAGGGACTACGCCAGTAGAGAGATCGCGCGAATTGAACCAGTCTAG
CTCAGCGCCAGTTGGATTTGCTACTCCTGAGAAAAATCGGAAAGCGGTGT
TCTTAGAGAGCTCTAGAAGTTCGTTTGTGCGCTCATGGATGACAACGCGA
AACGCGGGATTATGGTCGAGAACGTGTCCTGTGCAACCAAAAATGTTCCT
TCCGCCTCCGAAACCAGAAGTAGATGAGGCTCTTACAGAAGAAACTCTGA
TACCTGTGGACAGGGTGGCGGCTGGTTTGTCAGGCTTGAGGCAAAATGTA
GCTGACTTAGGACGTTTTTCGAGTATTGTCTCAGCCAAGGCTGCAGAAGG
ATTGTCCAGTATCTTCAAACGTATTGAACAGGAGGTAGGAAGAATGGATA
TTGGAGGACAACCATCTCCGCACACACCGGCTTCTGCTGGGCATGTGAGA
AAGTCAGATACGAACACAAGCGAATCTTCTCGAACAAAGTCGGCGCCTCG
GTAG