Gcaud3889.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3889.t1
Unique Name	Gcaud3889.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_54_length_62775_cov_4.630257	contig	NODE_54_length_62775_cov_4.630257:44164..45045 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S311_58V6.1
PFAMs	JAB,MitMem_reg
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03249
KEGG Pathway	ko03013,map03013
GOs	GO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005852,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009743,GO:0009744,GO:0009790,GO:0009791,GO:0009793,GO:0009846,GO:0009856,GO:0009987,GO:0010033,GO:0010154,GO:0010467,GO:0016020,GO:0019538,GO:0022414,GO:0031369,GO:0032501,GO:0032502,GO:0032991,GO:0034285,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044706,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051704,GO:0061458,GO:0071541,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901700
Evalue	5.55e-73
EggNOG OGs	COG1310@1\|root,KOG2975@2759\|Eukaryota,37NSR@33090\|Viridiplantae,3GEI1@35493\|Streptophyta
Description	Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
COG category	J
BRITE	ko00000,ko00001,ko03012,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3889	Gcaud3889	Gracilaria caudata M_176_S67 male	gene	NODE_54_length_62775_cov_4.630257 44164..45045 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3889.t1.stop1	Gcaud3889.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_54_length_62775_cov_4.630257 44164..44166 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3889.t1.CDS1	Gcaud3889.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_54_length_62775_cov_4.630257 44164..45045 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3889.t1.exon1	Gcaud3889.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_54_length_62775_cov_4.630257 44164..45045 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3889.t1.start1	Gcaud3889.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_54_length_62775_cov_4.630257 45043..45045 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3889.t1	Gcaud3889.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_54_length_62775_cov_4.630257 44164..45045 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_54_length_62775_cov_4.630257:44164..45045-
coding sequence from alignment at NODE_54_length_62775_cov_4.630257:44164..45045-

mRNA sequence

>Gcaud3889.t1 ID=Gcaud3889.t1|Name=Gcaud3889.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp
MESTDIFLGGEDSGVREVQVSPVVLFNVLDHFIRRTEGKKRVIGTLLGRF
TASGTVYVTDSFPLPHSENGEEVAVDTDYHKNMYDLHNRVNSAEELVGWY
ATGTETDLKSVIIHEFYGRECVNPVHLLVDAELSSDRFDMSAFVSTSYKI
EELALSSEFRSIPVCMKPEKAEKVGLDVLFKNRRREEGDLNSPVMASEIE
NLEKSMERLLDLLDTIGKNVDAVVAGEVEGDVTTGRFLAETLTMVPRMNA
SDFERLFGDNMRDLLMVAYLCKLTQTQLIVAEKLLCVDTTPKY*

spliced messenger RNA

>Gcaud3889.t1 ID=Gcaud3889.t1|Name=Gcaud3889.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=882bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:44164..45045- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGTCGACCGATATCTTCCTTGGTGGTGAAGATAGCGGAGTTCGTGA
GGTTCAAGTTTCCCCTGTTGTATTATTTAATGTATTGGATCATTTTATTC
GTCGGACAGAAGGGAAAAAGCGAGTGATTGGAACTTTGTTGGGGCGTTTT
ACAGCATCTGGCACAGTGTATGTTACAGATTCCTTTCCACTGCCTCATTC
CGAGAATGGAGAGGAAGTTGCAGTCGATACCGATTACCATAAGAACATGT
ATGACCTTCACAACAGAGTGAACTCAGCGGAGGAACTTGTTGGATGGTAC
GCCACTGGAACTGAAACCGACCTGAAATCTGTTATCATTCACGAGTTCTA
TGGTCGGGAATGTGTTAATCCTGTTCATCTATTAGTAGATGCTGAGTTGT
CAAGCGATCGATTCGACATGAGCGCTTTCGTGTCAACTTCGTACAAGATT
GAGGAGCTTGCTCTTAGCTCTGAATTTCGCTCCATTCCAGTTTGTATGAA
GCCAGAAAAGGCTGAAAAGGTGGGCCTCGATGTTCTTTTCAAGAACAGAA
GAAGGGAAGAAGGCGATCTTAACTCCCCAGTAATGGCGTCCGAAATTGAA
AACCTTGAAAAGTCTATGGAAAGGCTGTTGGACCTTTTGGATACGATCGG
AAAGAATGTAGACGCAGTTGTTGCAGGAGAAGTGGAAGGAGATGTCACGA
CCGGGAGATTTTTGGCGGAGACTTTGACAATGGTGCCAAGGATGAATGCT
TCTGATTTCGAAAGATTGTTCGGAGACAATATGCGAGATTTACTTATGGT
TGCTTACCTCTGCAAACTAACGCAAACGCAGTTGATTGTGGCCGAGAAAC
TGCTTTGTGTAGATACCACGCCAAAGTACTGA

protein sequence of Gcaud3889.t1

>Gcaud3889.t1 ID=Gcaud3889.t1|Name=Gcaud3889.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=294bp
MESTDIFLGGEDSGVREVQVSPVVLFNVLDHFIRRTEGKKRVIGTLLGRF
TASGTVYVTDSFPLPHSENGEEVAVDTDYHKNMYDLHNRVNSAEELVGWY
ATGTETDLKSVIIHEFYGRECVNPVHLLVDAELSSDRFDMSAFVSTSYKI
EELALSSEFRSIPVCMKPEKAEKVGLDVLFKNRRREEGDLNSPVMASEIE
NLEKSMERLLDLLDTIGKNVDAVVAGEVEGDVTTGRFLAETLTMVPRMNA
SDFERLFGDNMRDLLMVAYLCKLTQTQLIVAEKLLCVDTTPKY*

mRNA from alignment at NODE_54_length_62775_cov_4.630257:44164..45045-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3889.t1 ID=Gcaud3889.t1|Name=Gcaud3889.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=882bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:44164..45045- (Gracilaria caudata M_176_S67 male)
ATGGAGTCGACCGATATCTTCCTTGGTGGTGAAGATAGCGGAGTTCGTGA
GGTTCAAGTTTCCCCTGTTGTATTATTTAATGTATTGGATCATTTTATTC
GTCGGACAGAAGGGAAAAAGCGAGTGATTGGAACTTTGTTGGGGCGTTTT
ACAGCATCTGGCACAGTGTATGTTACAGATTCCTTTCCACTGCCTCATTC
CGAGAATGGAGAGGAAGTTGCAGTCGATACCGATTACCATAAGAACATGT
ATGACCTTCACAACAGAGTGAACTCAGCGGAGGAACTTGTTGGATGGTAC
GCCACTGGAACTGAAACCGACCTGAAATCTGTTATCATTCACGAGTTCTA
TGGTCGGGAATGTGTTAATCCTGTTCATCTATTAGTAGATGCTGAGTTGT
CAAGCGATCGATTCGACATGAGCGCTTTCGTGTCAACTTCGTACAAGATT
GAGGAGCTTGCTCTTAGCTCTGAATTTCGCTCCATTCCAGTTTGTATGAA
GCCAGAAAAGGCTGAAAAGGTGGGCCTCGATGTTCTTTTCAAGAACAGAA
GAAGGGAAGAAGGCGATCTTAACTCCCCAGTAATGGCGTCCGAAATTGAA
AACCTTGAAAAGTCTATGGAAAGGCTGTTGGACCTTTTGGATACGATCGG
AAAGAATGTAGACGCAGTTGTTGCAGGAGAAGTGGAAGGAGATGTCACGA
CCGGGAGATTTTTGGCGGAGACTTTGACAATGGTGCCAAGGATGAATGCT
TCTGATTTCGAAAGATTGTTCGGAGACAATATGCGAGATTTACTTATGGT
TGCTTACCTCTGCAAACTAACGCAAACGCAGTTGATTGTGGCCGAGAAAC
TGCTTTGTGTAGATACCACGCCAAAGTACTGA

Coding sequence (CDS) from alignment at NODE_54_length_62775_cov_4.630257:44164..45045-

>Gcaud3889.t1 ID=Gcaud3889.t1|Name=Gcaud3889.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=882bp|location=Sequence derived from alignment at NODE_54_length_62775_cov_4.630257:44164..45045- (Gracilaria caudata M_176_S67 male)
ATGGAGTCGACCGATATCTTCCTTGGTGGTGAAGATAGCGGAGTTCGTGA
GGTTCAAGTTTCCCCTGTTGTATTATTTAATGTATTGGATCATTTTATTC
GTCGGACAGAAGGGAAAAAGCGAGTGATTGGAACTTTGTTGGGGCGTTTT
ACAGCATCTGGCACAGTGTATGTTACAGATTCCTTTCCACTGCCTCATTC
CGAGAATGGAGAGGAAGTTGCAGTCGATACCGATTACCATAAGAACATGT
ATGACCTTCACAACAGAGTGAACTCAGCGGAGGAACTTGTTGGATGGTAC
GCCACTGGAACTGAAACCGACCTGAAATCTGTTATCATTCACGAGTTCTA
TGGTCGGGAATGTGTTAATCCTGTTCATCTATTAGTAGATGCTGAGTTGT
CAAGCGATCGATTCGACATGAGCGCTTTCGTGTCAACTTCGTACAAGATT
GAGGAGCTTGCTCTTAGCTCTGAATTTCGCTCCATTCCAGTTTGTATGAA
GCCAGAAAAGGCTGAAAAGGTGGGCCTCGATGTTCTTTTCAAGAACAGAA
GAAGGGAAGAAGGCGATCTTAACTCCCCAGTAATGGCGTCCGAAATTGAA
AACCTTGAAAAGTCTATGGAAAGGCTGTTGGACCTTTTGGATACGATCGG
AAAGAATGTAGACGCAGTTGTTGCAGGAGAAGTGGAAGGAGATGTCACGA
CCGGGAGATTTTTGGCGGAGACTTTGACAATGGTGCCAAGGATGAATGCT
TCTGATTTCGAAAGATTGTTCGGAGACAATATGCGAGATTTACTTATGGT
TGCTTACCTCTGCAAACTAACGCAAACGCAGTTGATTGTGGCCGAGAAAC
TGCTTTGTGTAGATACCACGCCAAAGTACTGA