Gcaud3870.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3870.t1
Unique Name	Gcaud3870.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1894_length_7841_cov_4.694581	contig	NODE_1894_length_7841_cov_4.694581:3478..5316 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3870	Gcaud3870	Gracilaria caudata M_176_S67 male	gene	NODE_1894_length_7841_cov_4.694581 3478..5316 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3870.t1.start1	Gcaud3870.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1894_length_7841_cov_4.694581 3478..3480 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3870.t1.CDS1	Gcaud3870.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1894_length_7841_cov_4.694581 3478..5316 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3870.t1.exon1	Gcaud3870.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1894_length_7841_cov_4.694581 3478..5316 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3870.t1.stop1	Gcaud3870.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1894_length_7841_cov_4.694581 5314..5316 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3870.t1	Gcaud3870.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1894_length_7841_cov_4.694581 3478..5316 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+
coding sequence from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+

mRNA sequence

>Gcaud3870.t1 ID=Gcaud3870.t1|Name=Gcaud3870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=613bp
MSSLDAEQDRTPFPFNYSVDNEMLTIVIAREMYVIPFHKARAAFDLVRQC
MIDMNAFGAAPLHRDAPASTNTPATSLQLLKRYHHLIVNHPSRDVPKEPF
HHMQFEKRTQLLDQIFSKVIGTIYVRGVGRPPRKYIFNDDLELMLLEHVL
QHKAHLRPRSELSTSFANIRKSILLKYQFASDHTVPAPSTMMEGAPTVSQ
LMVRYQYLISSHVNSVIKQEADQQRDPEATRKLRHLLDIIVRAIVTQALS
GRDLLRKSRRSSFELLENDGEHPVPRTKRRKSYPGVETSFTEPVILGNGS
RTPNFPQSRPTAATGVKDVKGNGHVTVRRATEPRTLPHVEPENENVWRRR
MEERRLAIEEDQQKKNWRLVALQEQRMKIEQQRVNLQEKTFEMMQEECKV
LIQTLSGLATVFSNVAQKLGIVDPKANSGDEDFEGKTMPLRIVDPKANSG
GKDIEGKAMSLSIDPVPSDTAVVAMESVANNETLMDIEPTMKETPNAADE
PAPDEMPPVENKQNGNCRAPMERRATVENESKVKNEPPTQDGSSREDPRE
QKQAKGVEPGGAEREVEKVAPLKQSAVVNEGHVTKSSGVGAASGPTKNSD
REKASANASTSK*

spliced messenger RNA

>Gcaud3870.t1 ID=Gcaud3870.t1|Name=Gcaud3870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCGCTCGACGCCGAGCAGGATCGGACACCGTTTCCGTTCAACTA
TAGCGTCGATAATGAAATGCTTACCATCGTTATTGCCAGGGAGATGTATG
TTATCCCTTTTCACAAGGCCCGTGCCGCCTTTGATTTGGTTCGTCAATGC
ATGATCGACATGAACGCTTTTGGTGCTGCCCCGCTCCATCGCGACGCTCC
TGCTTCCACCAATACCCCGGCCACTTCGTTGCAGTTGCTCAAGCGCTATC
ATCATCTCATTGTGAACCACCCTAGTCGCGATGTGCCCAAAGAACCCTTT
CACCATATGCAGTTCGAAAAGCGCACTCAACTTCTCGATCAGATCTTCTC
GAAGGTAATAGGCACTATTTATGTCCGTGGTGTGGGTAGGCCACCGCGCA
AGTATATTTTCAACGATGATTTGGAGCTCATGCTGCTTGAACACGTACTG
CAACACAAAGCACATCTTCGTCCCCGTTCGGAGCTCAGCACCAGCTTTGC
CAACATCCGAAAGAGCATTCTTCTCAAGTATCAATTTGCATCGGATCATA
CCGTACCAGCGCCCTCCACCATGATGGAAGGAGCTCCCACCGTATCGCAA
CTCATGGTTCGCTATCAGTATCTGATTTCGTCTCACGTCAACTCAGTCAT
CAAACAAGAGGCCGACCAACAACGAGACCCTGAAGCCACCCGCAAACTTC
GTCACCTGCTGGATATTATCGTGCGCGCAATTGTCACACAAGCCCTTTCT
GGTCGTGATCTTCTCAGAAAAAGCCGTCGTTCTTCATTCGAGCTATTAGA
GAACGACGGTGAACATCCTGTTCCCCGAACAAAGAGAAGGAAGTCATATC
CAGGCGTGGAAACCTCCTTCACTGAGCCCGTAATACTAGGAAATGGGAGT
CGTACTCCAAATTTCCCGCAATCTCGCCCTACCGCTGCCACTGGTGTAAA
AGATGTGAAAGGAAACGGTCATGTGACAGTACGTAGAGCAACAGAGCCTC
GAACACTCCCTCACGTCGAGCCCGAAAACGAAAACGTATGGCGGAGAAGA
ATGGAGGAAAGGCGACTGGCAATTGAAGAAGATCAGCAGAAAAAGAACTG
GAGGCTGGTCGCTCTGCAGGAACAGAGGATGAAGATCGAACAGCAGCGCG
TGAATCTTCAGGAAAAAACATTTGAGATGATGCAAGAAGAATGTAAGGTG
CTGATTCAGACGCTCTCTGGTCTCGCAACTGTGTTTTCCAACGTGGCACA
GAAGTTGGGCATTGTCGATCCCAAGGCAAACTCCGGCGACGAGGATTTCG
AGGGAAAGACAATGCCTCTGAGAATTGTTGATCCCAAGGCAAACTCCGGG
GGTAAGGATATTGAGGGAAAGGCAATGTCTCTGAGCATTGACCCTGTTCC
AAGTGACACGGCAGTCGTTGCTATGGAGTCAGTCGCGAACAATGAAACAC
TCATGGACATAGAGCCGACTATGAAGGAAACCCCTAACGCAGCAGACGAA
CCAGCACCAGATGAAATGCCGCCCGTTGAGAACAAGCAGAATGGGAATTG
TAGGGCACCTATGGAGCGTCGAGCGACAGTTGAAAACGAATCAAAAGTGA
AGAATGAGCCACCTACCCAAGATGGATCTTCCAGGGAAGACCCCAGGGAG
CAGAAGCAAGCCAAGGGTGTTGAGCCAGGCGGAGCTGAAAGGGAGGTGGA
GAAAGTTGCCCCCCTCAAGCAATCAGCTGTCGTTAATGAAGGACATGTTA
CAAAATCGTCCGGGGTTGGGGCTGCCTCAGGCCCGACTAAGAACTCAGAC
AGGGAAAAGGCTTCAGCAAATGCGTCTACCAGCAAGTGA

protein sequence of Gcaud3870.t1

>Gcaud3870.t1 ID=Gcaud3870.t1|Name=Gcaud3870.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=613bp
MSSLDAEQDRTPFPFNYSVDNEMLTIVIAREMYVIPFHKARAAFDLVRQC
MIDMNAFGAAPLHRDAPASTNTPATSLQLLKRYHHLIVNHPSRDVPKEPF
HHMQFEKRTQLLDQIFSKVIGTIYVRGVGRPPRKYIFNDDLELMLLEHVL
QHKAHLRPRSELSTSFANIRKSILLKYQFASDHTVPAPSTMMEGAPTVSQ
LMVRYQYLISSHVNSVIKQEADQQRDPEATRKLRHLLDIIVRAIVTQALS
GRDLLRKSRRSSFELLENDGEHPVPRTKRRKSYPGVETSFTEPVILGNGS
RTPNFPQSRPTAATGVKDVKGNGHVTVRRATEPRTLPHVEPENENVWRRR
MEERRLAIEEDQQKKNWRLVALQEQRMKIEQQRVNLQEKTFEMMQEECKV
LIQTLSGLATVFSNVAQKLGIVDPKANSGDEDFEGKTMPLRIVDPKANSG
GKDIEGKAMSLSIDPVPSDTAVVAMESVANNETLMDIEPTMKETPNAADE
PAPDEMPPVENKQNGNCRAPMERRATVENESKVKNEPPTQDGSSREDPRE
QKQAKGVEPGGAEREVEKVAPLKQSAVVNEGHVTKSSGVGAASGPTKNSD
REKASANASTSK*

mRNA from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3870.t1 ID=Gcaud3870.t1|Name=Gcaud3870.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1839bp|location=Sequence derived from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCGCTCGACGCCGAGCAGGATCGGACACCGTTTCCGTTCAACTA
TAGCGTCGATAATGAAATGCTTACCATCGTTATTGCCAGGGAGATGTATG
TTATCCCTTTTCACAAGGCCCGTGCCGCCTTTGATTTGGTTCGTCAATGC
ATGATCGACATGAACGCTTTTGGTGCTGCCCCGCTCCATCGCGACGCTCC
TGCTTCCACCAATACCCCGGCCACTTCGTTGCAGTTGCTCAAGCGCTATC
ATCATCTCATTGTGAACCACCCTAGTCGCGATGTGCCCAAAGAACCCTTT
CACCATATGCAGTTCGAAAAGCGCACTCAACTTCTCGATCAGATCTTCTC
GAAGGTAATAGGCACTATTTATGTCCGTGGTGTGGGTAGGCCACCGCGCA
AGTATATTTTCAACGATGATTTGGAGCTCATGCTGCTTGAACACGTACTG
CAACACAAAGCACATCTTCGTCCCCGTTCGGAGCTCAGCACCAGCTTTGC
CAACATCCGAAAGAGCATTCTTCTCAAGTATCAATTTGCATCGGATCATA
CCGTACCAGCGCCCTCCACCATGATGGAAGGAGCTCCCACCGTATCGCAA
CTCATGGTTCGCTATCAGTATCTGATTTCGTCTCACGTCAACTCAGTCAT
CAAACAAGAGGCCGACCAACAACGAGACCCTGAAGCCACCCGCAAACTTC
GTCACCTGCTGGATATTATCGTGCGCGCAATTGTCACACAAGCCCTTTCT
GGTCGTGATCTTCTCAGAAAAAGCCGTCGTTCTTCATTCGAGCTATTAGA
GAACGACGGTGAACATCCTGTTCCCCGAACAAAGAGAAGGAAGTCATATC
CAGGCGTGGAAACCTCCTTCACTGAGCCCGTAATACTAGGAAATGGGAGT
CGTACTCCAAATTTCCCGCAATCTCGCCCTACCGCTGCCACTGGTGTAAA
AGATGTGAAAGGAAACGGTCATGTGACAGTACGTAGAGCAACAGAGCCTC
GAACACTCCCTCACGTCGAGCCCGAAAACGAAAACGTATGGCGGAGAAGA
ATGGAGGAAAGGCGACTGGCAATTGAAGAAGATCAGCAGAAAAAGAACTG
GAGGCTGGTCGCTCTGCAGGAACAGAGGATGAAGATCGAACAGCAGCGCG
TGAATCTTCAGGAAAAAACATTTGAGATGATGCAAGAAGAATGTAAGGTG
CTGATTCAGACGCTCTCTGGTCTCGCAACTGTGTTTTCCAACGTGGCACA
GAAGTTGGGCATTGTCGATCCCAAGGCAAACTCCGGCGACGAGGATTTCG
AGGGAAAGACAATGCCTCTGAGAATTGTTGATCCCAAGGCAAACTCCGGG
GGTAAGGATATTGAGGGAAAGGCAATGTCTCTGAGCATTGACCCTGTTCC
AAGTGACACGGCAGTCGTTGCTATGGAGTCAGTCGCGAACAATGAAACAC
TCATGGACATAGAGCCGACTATGAAGGAAACCCCTAACGCAGCAGACGAA
CCAGCACCAGATGAAATGCCGCCCGTTGAGAACAAGCAGAATGGGAATTG
TAGGGCACCTATGGAGCGTCGAGCGACAGTTGAAAACGAATCAAAAGTGA
AGAATGAGCCACCTACCCAAGATGGATCTTCCAGGGAAGACCCCAGGGAG
CAGAAGCAAGCCAAGGGTGTTGAGCCAGGCGGAGCTGAAAGGGAGGTGGA
GAAAGTTGCCCCCCTCAAGCAATCAGCTGTCGTTAATGAAGGACATGTTA
CAAAATCGTCCGGGGTTGGGGCTGCCTCAGGCCCGACTAAGAACTCAGAC
AGGGAAAAGGCTTCAGCAAATGCGTCTACCAGCAAGTGA

Coding sequence (CDS) from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+

>Gcaud3870.t1 ID=Gcaud3870.t1|Name=Gcaud3870.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1839bp|location=Sequence derived from alignment at NODE_1894_length_7841_cov_4.694581:3478..5316+ (Gracilaria caudata M_176_S67 male)
ATGTCCTCGCTCGACGCCGAGCAGGATCGGACACCGTTTCCGTTCAACTA
TAGCGTCGATAATGAAATGCTTACCATCGTTATTGCCAGGGAGATGTATG
TTATCCCTTTTCACAAGGCCCGTGCCGCCTTTGATTTGGTTCGTCAATGC
ATGATCGACATGAACGCTTTTGGTGCTGCCCCGCTCCATCGCGACGCTCC
TGCTTCCACCAATACCCCGGCCACTTCGTTGCAGTTGCTCAAGCGCTATC
ATCATCTCATTGTGAACCACCCTAGTCGCGATGTGCCCAAAGAACCCTTT
CACCATATGCAGTTCGAAAAGCGCACTCAACTTCTCGATCAGATCTTCTC
GAAGGTAATAGGCACTATTTATGTCCGTGGTGTGGGTAGGCCACCGCGCA
AGTATATTTTCAACGATGATTTGGAGCTCATGCTGCTTGAACACGTACTG
CAACACAAAGCACATCTTCGTCCCCGTTCGGAGCTCAGCACCAGCTTTGC
CAACATCCGAAAGAGCATTCTTCTCAAGTATCAATTTGCATCGGATCATA
CCGTACCAGCGCCCTCCACCATGATGGAAGGAGCTCCCACCGTATCGCAA
CTCATGGTTCGCTATCAGTATCTGATTTCGTCTCACGTCAACTCAGTCAT
CAAACAAGAGGCCGACCAACAACGAGACCCTGAAGCCACCCGCAAACTTC
GTCACCTGCTGGATATTATCGTGCGCGCAATTGTCACACAAGCCCTTTCT
GGTCGTGATCTTCTCAGAAAAAGCCGTCGTTCTTCATTCGAGCTATTAGA
GAACGACGGTGAACATCCTGTTCCCCGAACAAAGAGAAGGAAGTCATATC
CAGGCGTGGAAACCTCCTTCACTGAGCCCGTAATACTAGGAAATGGGAGT
CGTACTCCAAATTTCCCGCAATCTCGCCCTACCGCTGCCACTGGTGTAAA
AGATGTGAAAGGAAACGGTCATGTGACAGTACGTAGAGCAACAGAGCCTC
GAACACTCCCTCACGTCGAGCCCGAAAACGAAAACGTATGGCGGAGAAGA
ATGGAGGAAAGGCGACTGGCAATTGAAGAAGATCAGCAGAAAAAGAACTG
GAGGCTGGTCGCTCTGCAGGAACAGAGGATGAAGATCGAACAGCAGCGCG
TGAATCTTCAGGAAAAAACATTTGAGATGATGCAAGAAGAATGTAAGGTG
CTGATTCAGACGCTCTCTGGTCTCGCAACTGTGTTTTCCAACGTGGCACA
GAAGTTGGGCATTGTCGATCCCAAGGCAAACTCCGGCGACGAGGATTTCG
AGGGAAAGACAATGCCTCTGAGAATTGTTGATCCCAAGGCAAACTCCGGG
GGTAAGGATATTGAGGGAAAGGCAATGTCTCTGAGCATTGACCCTGTTCC
AAGTGACACGGCAGTCGTTGCTATGGAGTCAGTCGCGAACAATGAAACAC
TCATGGACATAGAGCCGACTATGAAGGAAACCCCTAACGCAGCAGACGAA
CCAGCACCAGATGAAATGCCGCCCGTTGAGAACAAGCAGAATGGGAATTG
TAGGGCACCTATGGAGCGTCGAGCGACAGTTGAAAACGAATCAAAAGTGA
AGAATGAGCCACCTACCCAAGATGGATCTTCCAGGGAAGACCCCAGGGAG
CAGAAGCAAGCCAAGGGTGTTGAGCCAGGCGGAGCTGAAAGGGAGGTGGA
GAAAGTTGCCCCCCTCAAGCAATCAGCTGTCGTTAATGAAGGACATGTTA
CAAAATCGTCCGGGGTTGGGGCTGCCTCAGGCCCGACTAAGAACTCAGAC
AGGGAAAAGGCTTCAGCAAATGCGTCTACCAGCAAGTGA