Gcaud386.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud386.t1
Unique NameGcaud386.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2117_length_6775_cov_4.731747contigNODE_2117_length_6775_cov_4.731747:849..2192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog485913.Krac_5159
PFAMsAPH
Max annot lvl200795|Chloroflexi
Evalue1.16e-20
EggNOG OGsCOG3173@1|root,COG3173@2|Bacteria,2G8QR@200795|Chloroflexi
DescriptionPhosphotransferase enzyme family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud386Gcaud386Gracilaria caudata M_176_S67 malegeneNODE_2117_length_6775_cov_4.731747 849..2192 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud386.t1.stop1Gcaud386.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2117_length_6775_cov_4.731747 849..851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud386.t1.CDS1Gcaud386.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2117_length_6775_cov_4.731747 849..2192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud386.t1.exon1Gcaud386.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2117_length_6775_cov_4.731747 849..2192 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud386.t1.start1Gcaud386.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2117_length_6775_cov_4.731747 2190..2192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud386.t1Gcaud386.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2117_length_6775_cov_4.731747 849..2192 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud386.t1 ID=Gcaud386.t1|Name=Gcaud386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp
MNYLLIARQRDHSILVEEGNRLPTIAYRGGVTHFIGEVSDHIRNNLNSHI
KLNFLRHEGFSRVDPLIVFEVPNDDVSETPKNCKWVIQSAADEIAVHPPS
KTITAYLEKYKLRGLNMEGEKLHPFSRAGWLERASVWITKTLNDNGHKVE
SIEKLQHGLGSCVVRAIVNSGLVFYMKSSNPKGWLNEVRVTQALGEVMPT
EFETPIAVDLDLGWMLTRDYGQTLPDSLFETDVELAKRVLCAWAEIQKNS
VSKVEKLQKRGVPIVDGKAMKAAVDRAMENPAWFKAQRDGMNKEQLERYT
DEWEYKNEYRAYLQRLFDKVAEYKVPLAIVHGDLESVNVIVRGDQRFTFI
DMFYTQISFPFLEVNLFPLICGSTFQEFDLDFYLEHWTEYESMDRLRELL
VLVKEVGSVESVISGVLDFEEGEEREKEQHYREMRFPVCRKFGYHED*
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spliced messenger RNA

>Gcaud386.t1 ID=Gcaud386.t1|Name=Gcaud386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_2117_length_6775_cov_4.731747:849..2192- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTACCTTCTTATCGCCCGTCAGCGCGATCATTCCATTTTGGTTGA
GGAAGGAAATCGCCTTCCCACAATCGCGTACAGGGGCGGCGTAACGCATT
TCATTGGCGAAGTGAGTGATCATATTCGAAACAATTTGAACAGCCACATC
AAGTTGAACTTCCTGCGTCACGAAGGCTTCTCCAGAGTAGACCCCCTTAT
TGTATTTGAGGTACCAAACGATGATGTATCAGAGACACCGAAGAACTGTA
AATGGGTGATACAATCTGCTGCTGATGAAATCGCCGTTCATCCTCCTTCG
AAAACGATCACAGCCTATCTGGAAAAGTACAAGTTACGTGGATTGAATAT
GGAGGGTGAAAAGCTTCATCCATTCTCGCGTGCAGGTTGGCTTGAACGGG
CAAGTGTGTGGATCACGAAGACGTTGAATGATAATGGGCATAAGGTAGAG
AGTATCGAAAAGCTCCAACATGGCCTTGGAAGCTGCGTGGTAAGAGCGAT
TGTGAATTCGGGTTTGGTGTTCTACATGAAGTCTTCAAATCCAAAGGGAT
GGCTGAATGAAGTGAGAGTGACACAGGCGCTAGGTGAGGTGATGCCAACA
GAGTTTGAAACGCCGATTGCTGTTGACTTAGATCTTGGTTGGATGCTGAC
GCGAGACTATGGACAGACTCTTCCGGACAGTTTGTTCGAGACAGACGTAG
AGCTTGCAAAGCGGGTGTTGTGCGCATGGGCGGAGATCCAGAAGAACTCA
GTATCAAAAGTTGAAAAGTTGCAAAAGCGTGGAGTGCCTATAGTAGATGG
GAAGGCGATGAAAGCGGCTGTTGACCGAGCTATGGAGAATCCGGCATGGT
TCAAAGCGCAGCGAGATGGAATGAACAAGGAGCAGTTAGAGCGCTACACT
GATGAATGGGAATACAAGAATGAGTATCGGGCGTACTTGCAACGTTTATT
CGACAAAGTTGCGGAGTATAAAGTTCCGTTAGCAATTGTGCATGGAGACT
TGGAATCGGTGAACGTCATTGTGCGAGGAGACCAAAGGTTCACGTTTATC
GACATGTTCTACACACAAATTTCGTTTCCATTTCTTGAGGTAAATCTATT
TCCTCTCATATGCGGATCGACGTTTCAGGAGTTCGATCTTGACTTTTACC
TGGAGCACTGGACAGAGTATGAGAGCATGGACAGACTGCGAGAACTACTG
GTACTAGTAAAGGAAGTAGGTTCCGTTGAAAGTGTAATATCTGGTGTTCT
AGATTTCGAGGAAGGAGAGGAACGCGAGAAGGAACAGCACTATCGCGAAA
TGAGATTCCCTGTGTGTCGTAAGTTCGGTTATCACGAGGATTGA
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protein sequence of Gcaud386.t1

>Gcaud386.t1 ID=Gcaud386.t1|Name=Gcaud386.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=448bp
MNYLLIARQRDHSILVEEGNRLPTIAYRGGVTHFIGEVSDHIRNNLNSHI
KLNFLRHEGFSRVDPLIVFEVPNDDVSETPKNCKWVIQSAADEIAVHPPS
KTITAYLEKYKLRGLNMEGEKLHPFSRAGWLERASVWITKTLNDNGHKVE
SIEKLQHGLGSCVVRAIVNSGLVFYMKSSNPKGWLNEVRVTQALGEVMPT
EFETPIAVDLDLGWMLTRDYGQTLPDSLFETDVELAKRVLCAWAEIQKNS
VSKVEKLQKRGVPIVDGKAMKAAVDRAMENPAWFKAQRDGMNKEQLERYT
DEWEYKNEYRAYLQRLFDKVAEYKVPLAIVHGDLESVNVIVRGDQRFTFI
DMFYTQISFPFLEVNLFPLICGSTFQEFDLDFYLEHWTEYESMDRLRELL
VLVKEVGSVESVISGVLDFEEGEEREKEQHYREMRFPVCRKFGYHED*
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mRNA from alignment at NODE_2117_length_6775_cov_4.731747:849..2192-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud386.t1 ID=Gcaud386.t1|Name=Gcaud386.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_2117_length_6775_cov_4.731747:849..2192- (Gracilaria caudata M_176_S67 male)
ATGAACTACCTTCTTATCGCCCGTCAGCGCGATCATTCCATTTTGGTTGA
GGAAGGAAATCGCCTTCCCACAATCGCGTACAGGGGCGGCGTAACGCATT
TCATTGGCGAAGTGAGTGATCATATTCGAAACAATTTGAACAGCCACATC
AAGTTGAACTTCCTGCGTCACGAAGGCTTCTCCAGAGTAGACCCCCTTAT
TGTATTTGAGGTACCAAACGATGATGTATCAGAGACACCGAAGAACTGTA
AATGGGTGATACAATCTGCTGCTGATGAAATCGCCGTTCATCCTCCTTCG
AAAACGATCACAGCCTATCTGGAAAAGTACAAGTTACGTGGATTGAATAT
GGAGGGTGAAAAGCTTCATCCATTCTCGCGTGCAGGTTGGCTTGAACGGG
CAAGTGTGTGGATCACGAAGACGTTGAATGATAATGGGCATAAGGTAGAG
AGTATCGAAAAGCTCCAACATGGCCTTGGAAGCTGCGTGGTAAGAGCGAT
TGTGAATTCGGGTTTGGTGTTCTACATGAAGTCTTCAAATCCAAAGGGAT
GGCTGAATGAAGTGAGAGTGACACAGGCGCTAGGTGAGGTGATGCCAACA
GAGTTTGAAACGCCGATTGCTGTTGACTTAGATCTTGGTTGGATGCTGAC
GCGAGACTATGGACAGACTCTTCCGGACAGTTTGTTCGAGACAGACGTAG
AGCTTGCAAAGCGGGTGTTGTGCGCATGGGCGGAGATCCAGAAGAACTCA
GTATCAAAAGTTGAAAAGTTGCAAAAGCGTGGAGTGCCTATAGTAGATGG
GAAGGCGATGAAAGCGGCTGTTGACCGAGCTATGGAGAATCCGGCATGGT
TCAAAGCGCAGCGAGATGGAATGAACAAGGAGCAGTTAGAGCGCTACACT
GATGAATGGGAATACAAGAATGAGTATCGGGCGTACTTGCAACGTTTATT
CGACAAAGTTGCGGAGTATAAAGTTCCGTTAGCAATTGTGCATGGAGACT
TGGAATCGGTGAACGTCATTGTGCGAGGAGACCAAAGGTTCACGTTTATC
GACATGTTCTACACACAAATTTCGTTTCCATTTCTTGAGGTAAATCTATT
TCCTCTCATATGCGGATCGACGTTTCAGGAGTTCGATCTTGACTTTTACC
TGGAGCACTGGACAGAGTATGAGAGCATGGACAGACTGCGAGAACTACTG
GTACTAGTAAAGGAAGTAGGTTCCGTTGAAAGTGTAATATCTGGTGTTCT
AGATTTCGAGGAAGGAGAGGAACGCGAGAAGGAACAGCACTATCGCGAAA
TGAGATTCCCTGTGTGTCGTAAGTTCGGTTATCACGAGGATTGA
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Coding sequence (CDS) from alignment at NODE_2117_length_6775_cov_4.731747:849..2192-

>Gcaud386.t1 ID=Gcaud386.t1|Name=Gcaud386.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1344bp|location=Sequence derived from alignment at NODE_2117_length_6775_cov_4.731747:849..2192- (Gracilaria caudata M_176_S67 male)
ATGAACTACCTTCTTATCGCCCGTCAGCGCGATCATTCCATTTTGGTTGA
GGAAGGAAATCGCCTTCCCACAATCGCGTACAGGGGCGGCGTAACGCATT
TCATTGGCGAAGTGAGTGATCATATTCGAAACAATTTGAACAGCCACATC
AAGTTGAACTTCCTGCGTCACGAAGGCTTCTCCAGAGTAGACCCCCTTAT
TGTATTTGAGGTACCAAACGATGATGTATCAGAGACACCGAAGAACTGTA
AATGGGTGATACAATCTGCTGCTGATGAAATCGCCGTTCATCCTCCTTCG
AAAACGATCACAGCCTATCTGGAAAAGTACAAGTTACGTGGATTGAATAT
GGAGGGTGAAAAGCTTCATCCATTCTCGCGTGCAGGTTGGCTTGAACGGG
CAAGTGTGTGGATCACGAAGACGTTGAATGATAATGGGCATAAGGTAGAG
AGTATCGAAAAGCTCCAACATGGCCTTGGAAGCTGCGTGGTAAGAGCGAT
TGTGAATTCGGGTTTGGTGTTCTACATGAAGTCTTCAAATCCAAAGGGAT
GGCTGAATGAAGTGAGAGTGACACAGGCGCTAGGTGAGGTGATGCCAACA
GAGTTTGAAACGCCGATTGCTGTTGACTTAGATCTTGGTTGGATGCTGAC
GCGAGACTATGGACAGACTCTTCCGGACAGTTTGTTCGAGACAGACGTAG
AGCTTGCAAAGCGGGTGTTGTGCGCATGGGCGGAGATCCAGAAGAACTCA
GTATCAAAAGTTGAAAAGTTGCAAAAGCGTGGAGTGCCTATAGTAGATGG
GAAGGCGATGAAAGCGGCTGTTGACCGAGCTATGGAGAATCCGGCATGGT
TCAAAGCGCAGCGAGATGGAATGAACAAGGAGCAGTTAGAGCGCTACACT
GATGAATGGGAATACAAGAATGAGTATCGGGCGTACTTGCAACGTTTATT
CGACAAAGTTGCGGAGTATAAAGTTCCGTTAGCAATTGTGCATGGAGACT
TGGAATCGGTGAACGTCATTGTGCGAGGAGACCAAAGGTTCACGTTTATC
GACATGTTCTACACACAAATTTCGTTTCCATTTCTTGAGGTAAATCTATT
TCCTCTCATATGCGGATCGACGTTTCAGGAGTTCGATCTTGACTTTTACC
TGGAGCACTGGACAGAGTATGAGAGCATGGACAGACTGCGAGAACTACTG
GTACTAGTAAAGGAAGTAGGTTCCGTTGAAAGTGTAATATCTGGTGTTCT
AGATTTCGAGGAAGGAGAGGAACGCGAGAAGGAACAGCACTATCGCGAAA
TGAGATTCCCTGTGTGTCGTAAGTTCGGTTATCACGAGGATTGA
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