Gcaud383.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud383.t1
Unique NameGcaud383.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length850
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2075_length_6946_cov_4.737418contigNODE_2075_length_6946_cov_4.737418:2841..5390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud383Gcaud383Gracilaria caudata M_176_S67 malegeneNODE_2075_length_6946_cov_4.737418 2841..5390 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud383.t1.start1Gcaud383.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2075_length_6946_cov_4.737418 2841..2843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud383.t1.CDS1Gcaud383.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2075_length_6946_cov_4.737418 2841..5390 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud383.t1.exon1Gcaud383.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2075_length_6946_cov_4.737418 2841..5390 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud383.t1.stop1Gcaud383.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2075_length_6946_cov_4.737418 5388..5390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud383.t1Gcaud383.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2075_length_6946_cov_4.737418 2841..5390 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud383.t1 ID=Gcaud383.t1|Name=Gcaud383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=850bp
MYVNSSVIDNEFFECDVPFRFNWPRLRHPAKWLSSEEPWFTPRHAGNSSI
RYMIPFLAQFGKEWLEDCSRAKEIVEQKMEISSNGVLMTYATKHAQMLTT
GGAFESDEEKMDANWSNTWSTILTHHEIRLSPPSEKGMAMPFGGKPDEFH
GFSKYESKIKRLIENLPEELFEVTDYGDEKVKVLQGISAFHLESFMYFLL
SEVIHVVGEQAVTEVPHEAVILPTTDKAEGDIQDILENDTYFGVSDQNIE
SSSTSLTRAPSENMMVDEEISDEEDEVHDRNECEQSRSEIGTRTNGTSEE
LPAVEDFALRAFERTFREKHLEVNSYQDILENSNYQQERRWPGSWSEVRV
MEYTVHLENIFALSYMGLMDSWGFLIERKAFSPEDRQLYYSELCQDSDTV
LARTVAAGRMLVSRCRSLWYYWSMCDLPNSVPPALGDIDHIGQSGGGRIK
FIGYIMETVRDCLAKWTEHNITEDKDTSSWSPVVETESACIQFDSSDALS
RQIRMLPNCQLEAHKYASVFRTFYERVVWECQKSILKLLDNDECAFGPSD
VELMILCILGFPGLRVSLADRSGVSELPGFEVLPLICGSTWGVRIEFNTI
DEKCVKVQMRIIPDRFSRITFVFEWARWIHNFEAWMKVLTCEYDEEDLSE
VEKSLSESSFENSVGAIRANGDNVSGATHVSVEGGEKNDIGVSYSRNESM
EDMADHDPTSNSFASAGSDLDVDVTLNNEEEEAEHQEDRIAAEENNGDDV
RVDCTCDGKYRLNTKAKRVFVTDRFGTKKYFWEWEVWRPQRAFEKHRYPI
LHDLQTTMVTCRGLGKETDEQKFADECGSAVADDGLRGNDSFANADEHV*
back to top

spliced messenger RNA

>Gcaud383.t1 ID=Gcaud383.t1|Name=Gcaud383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2550bp|location=Sequence derived from alignment at NODE_2075_length_6946_cov_4.737418:2841..5390+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACGTCAACAGCTCCGTGATCGACAATGAGTTCTTCGAATGTGATGT
TCCCTTCCGATTCAATTGGCCTAGGCTGCGTCACCCGGCCAAATGGCTTT
CCTCGGAAGAGCCTTGGTTCACGCCACGCCACGCCGGGAATTCTTCTATT
CGGTACATGATTCCCTTCCTGGCACAGTTTGGAAAGGAGTGGCTTGAGGA
TTGTTCTCGTGCCAAAGAAATCGTTGAGCAAAAGATGGAAATTTCCTCGA
ACGGGGTTTTGATGACATACGCTACGAAACATGCGCAGATGTTAACAACA
GGAGGTGCATTTGAATCCGACGAAGAGAAGATGGATGCCAATTGGTCGAA
TACATGGTCAACTATTCTCACGCACCACGAAATCCGGCTATCTCCGCCTT
CTGAGAAAGGAATGGCAATGCCATTTGGTGGAAAACCAGATGAATTCCAT
GGTTTCTCAAAATACGAATCAAAGATCAAGCGACTTATTGAAAATTTGCC
GGAAGAACTGTTCGAGGTAACTGATTACGGGGACGAAAAAGTCAAAGTTC
TTCAAGGAATTTCAGCATTCCATTTGGAAAGCTTCATGTATTTCTTGCTT
TCAGAAGTAATTCACGTTGTGGGAGAGCAAGCAGTAACGGAAGTCCCACA
TGAAGCCGTGATATTACCCACTACGGACAAAGCAGAAGGAGACATACAGG
ACATTCTCGAAAATGACACATATTTCGGGGTTTCTGACCAAAATATAGAA
AGCTCTTCAACAAGTTTGACAAGAGCACCCTCAGAAAACATGATGGTGGA
CGAAGAAATATCGGACGAAGAAGACGAAGTTCATGATAGAAATGAATGTG
AACAATCCCGAAGCGAGATCGGCACCCGTACAAATGGAACTAGTGAAGAA
CTGCCAGCAGTGGAAGATTTCGCTCTGCGGGCGTTTGAGAGAACCTTTCG
TGAGAAACATTTAGAAGTAAATTCTTACCAGGATATTCTTGAGAACTCTA
ATTATCAGCAGGAGAGGAGATGGCCAGGGTCTTGGTCGGAGGTAAGAGTG
ATGGAATACACGGTTCACTTGGAGAATATTTTCGCTTTATCATATATGGG
TTTGATGGATTCATGGGGGTTTCTAATTGAAAGAAAGGCCTTCAGTCCTG
AGGACCGTCAGTTGTACTACTCTGAACTTTGCCAGGACAGCGACACAGTG
CTGGCTCGAACAGTGGCGGCGGGAAGAATGCTTGTTTCACGGTGCAGGTC
ACTTTGGTATTATTGGAGTATGTGCGATTTGCCGAATAGTGTACCACCCG
CTTTAGGAGATATAGATCACATTGGGCAGTCCGGAGGAGGTCGGATCAAA
TTCATTGGGTACATCATGGAGACAGTGCGCGACTGTTTGGCTAAATGGAC
CGAGCACAACATTACAGAAGATAAGGATACAAGCTCGTGGAGTCCAGTGG
TAGAGACAGAAAGTGCTTGTATACAATTTGATTCGAGTGACGCACTTTCG
AGGCAGATAAGAATGTTGCCAAACTGCCAACTTGAAGCTCACAAATATGC
GTCAGTCTTTCGGACATTTTATGAGCGAGTCGTTTGGGAATGTCAGAAGA
GTATTTTGAAGTTGTTAGACAACGATGAATGTGCATTTGGTCCGTCTGAC
GTGGAGCTGATGATATTATGCATTCTAGGATTCCCTGGTCTTCGAGTGAG
CCTCGCGGATAGATCTGGCGTATCCGAGCTTCCTGGCTTTGAAGTGTTAC
CTCTCATCTGTGGATCAACCTGGGGAGTACGTATTGAATTCAATACGATT
GATGAGAAGTGCGTGAAGGTTCAAATGAGAATAATTCCTGATCGATTCTC
GAGGATTACTTTTGTTTTTGAGTGGGCACGGTGGATACATAACTTTGAAG
CATGGATGAAGGTATTGACATGCGAGTATGATGAGGAGGATCTTTCTGAA
GTTGAGAAAAGCCTCAGTGAATCCTCATTCGAAAACAGTGTTGGCGCAAT
TAGGGCCAATGGAGACAATGTTTCGGGGGCTACCCATGTTTCGGTTGAGG
GTGGGGAAAAAAACGACATCGGTGTTAGTTATTCAAGGAACGAGAGCATG
GAAGATATGGCAGATCATGACCCAACCTCCAATTCGTTTGCAAGCGCTGG
AAGTGATCTTGATGTCGATGTTACTTTGAATAACGAGGAGGAAGAAGCCG
AGCACCAGGAGGACAGAATTGCCGCAGAAGAAAACAATGGCGATGATGTG
CGCGTGGATTGCACATGCGACGgcaaatacagactcaacactaaggctaa
gcgggtttttgttacggacagattcggtacgaagaagtacttctgggaat
gggaagtatggagACCACAGCGAGCATTCGAGAAACATAGGTATCCCATT
CTGCACGACCTGCAAACCACCATGGTGACATGCAGGGGCCTCGGAAAAGA
AACGGACGAGCAAAAATTTGCAGATGAATGCGGCTCTGCTGTTGCCGACG
ACGGCCTCAGAGGCAACGATTCATTTGCCAACGCAGATGAGCATGTGTAG
back to top

protein sequence of Gcaud383.t1

>Gcaud383.t1 ID=Gcaud383.t1|Name=Gcaud383.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=850bp
MYVNSSVIDNEFFECDVPFRFNWPRLRHPAKWLSSEEPWFTPRHAGNSSI
RYMIPFLAQFGKEWLEDCSRAKEIVEQKMEISSNGVLMTYATKHAQMLTT
GGAFESDEEKMDANWSNTWSTILTHHEIRLSPPSEKGMAMPFGGKPDEFH
GFSKYESKIKRLIENLPEELFEVTDYGDEKVKVLQGISAFHLESFMYFLL
SEVIHVVGEQAVTEVPHEAVILPTTDKAEGDIQDILENDTYFGVSDQNIE
SSSTSLTRAPSENMMVDEEISDEEDEVHDRNECEQSRSEIGTRTNGTSEE
LPAVEDFALRAFERTFREKHLEVNSYQDILENSNYQQERRWPGSWSEVRV
MEYTVHLENIFALSYMGLMDSWGFLIERKAFSPEDRQLYYSELCQDSDTV
LARTVAAGRMLVSRCRSLWYYWSMCDLPNSVPPALGDIDHIGQSGGGRIK
FIGYIMETVRDCLAKWTEHNITEDKDTSSWSPVVETESACIQFDSSDALS
RQIRMLPNCQLEAHKYASVFRTFYERVVWECQKSILKLLDNDECAFGPSD
VELMILCILGFPGLRVSLADRSGVSELPGFEVLPLICGSTWGVRIEFNTI
DEKCVKVQMRIIPDRFSRITFVFEWARWIHNFEAWMKVLTCEYDEEDLSE
VEKSLSESSFENSVGAIRANGDNVSGATHVSVEGGEKNDIGVSYSRNESM
EDMADHDPTSNSFASAGSDLDVDVTLNNEEEEAEHQEDRIAAEENNGDDV
RVDCTCDGKYRLNTKAKRVFVTDRFGTKKYFWEWEVWRPQRAFEKHRYPI
LHDLQTTMVTCRGLGKETDEQKFADECGSAVADDGLRGNDSFANADEHV*
back to top

mRNA from alignment at NODE_2075_length_6946_cov_4.737418:2841..5390+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud383.t1 ID=Gcaud383.t1|Name=Gcaud383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2550bp|location=Sequence derived from alignment at NODE_2075_length_6946_cov_4.737418:2841..5390+ (Gracilaria caudata M_176_S67 male)
ATGTACGTCAACAGCTCCGTGATCGACAATGAGTTCTTCGAATGTGATGT TCCCTTCCGATTCAATTGGCCTAGGCTGCGTCACCCGGCCAAATGGCTTT CCTCGGAAGAGCCTTGGTTCACGCCACGCCACGCCGGGAATTCTTCTATT CGGTACATGATTCCCTTCCTGGCACAGTTTGGAAAGGAGTGGCTTGAGGA TTGTTCTCGTGCCAAAGAAATCGTTGAGCAAAAGATGGAAATTTCCTCGA ACGGGGTTTTGATGACATACGCTACGAAACATGCGCAGATGTTAACAACA GGAGGTGCATTTGAATCCGACGAAGAGAAGATGGATGCCAATTGGTCGAA TACATGGTCAACTATTCTCACGCACCACGAAATCCGGCTATCTCCGCCTT CTGAGAAAGGAATGGCAATGCCATTTGGTGGAAAACCAGATGAATTCCAT GGTTTCTCAAAATACGAATCAAAGATCAAGCGACTTATTGAAAATTTGCC GGAAGAACTGTTCGAGGTAACTGATTACGGGGACGAAAAAGTCAAAGTTC TTCAAGGAATTTCAGCATTCCATTTGGAAAGCTTCATGTATTTCTTGCTT TCAGAAGTAATTCACGTTGTGGGAGAGCAAGCAGTAACGGAAGTCCCACA TGAAGCCGTGATATTACCCACTACGGACAAAGCAGAAGGAGACATACAGG ACATTCTCGAAAATGACACATATTTCGGGGTTTCTGACCAAAATATAGAA AGCTCTTCAACAAGTTTGACAAGAGCACCCTCAGAAAACATGATGGTGGA CGAAGAAATATCGGACGAAGAAGACGAAGTTCATGATAGAAATGAATGTG AACAATCCCGAAGCGAGATCGGCACCCGTACAAATGGAACTAGTGAAGAA CTGCCAGCAGTGGAAGATTTCGCTCTGCGGGCGTTTGAGAGAACCTTTCG TGAGAAACATTTAGAAGTAAATTCTTACCAGGATATTCTTGAGAACTCTA ATTATCAGCAGGAGAGGAGATGGCCAGGGTCTTGGTCGGAGGTAAGAGTG ATGGAATACACGGTTCACTTGGAGAATATTTTCGCTTTATCATATATGGG TTTGATGGATTCATGGGGGTTTCTAATTGAAAGAAAGGCCTTCAGTCCTG AGGACCGTCAGTTGTACTACTCTGAACTTTGCCAGGACAGCGACACAGTG CTGGCTCGAACAGTGGCGGCGGGAAGAATGCTTGTTTCACGGTGCAGGTC ACTTTGGTATTATTGGAGTATGTGCGATTTGCCGAATAGTGTACCACCCG CTTTAGGAGATATAGATCACATTGGGCAGTCCGGAGGAGGTCGGATCAAA TTCATTGGGTACATCATGGAGACAGTGCGCGACTGTTTGGCTAAATGGAC CGAGCACAACATTACAGAAGATAAGGATACAAGCTCGTGGAGTCCAGTGG TAGAGACAGAAAGTGCTTGTATACAATTTGATTCGAGTGACGCACTTTCG AGGCAGATAAGAATGTTGCCAAACTGCCAACTTGAAGCTCACAAATATGC GTCAGTCTTTCGGACATTTTATGAGCGAGTCGTTTGGGAATGTCAGAAGA GTATTTTGAAGTTGTTAGACAACGATGAATGTGCATTTGGTCCGTCTGAC GTGGAGCTGATGATATTATGCATTCTAGGATTCCCTGGTCTTCGAGTGAG CCTCGCGGATAGATCTGGCGTATCCGAGCTTCCTGGCTTTGAAGTGTTAC CTCTCATCTGTGGATCAACCTGGGGAGTACGTATTGAATTCAATACGATT GATGAGAAGTGCGTGAAGGTTCAAATGAGAATAATTCCTGATCGATTCTC GAGGATTACTTTTGTTTTTGAGTGGGCACGGTGGATACATAACTTTGAAG CATGGATGAAGGTATTGACATGCGAGTATGATGAGGAGGATCTTTCTGAA GTTGAGAAAAGCCTCAGTGAATCCTCATTCGAAAACAGTGTTGGCGCAAT TAGGGCCAATGGAGACAATGTTTCGGGGGCTACCCATGTTTCGGTTGAGG GTGGGGAAAAAAACGACATCGGTGTTAGTTATTCAAGGAACGAGAGCATG GAAGATATGGCAGATCATGACCCAACCTCCAATTCGTTTGCAAGCGCTGG AAGTGATCTTGATGTCGATGTTACTTTGAATAACGAGGAGGAAGAAGCCG AGCACCAGGAGGACAGAATTGCCGCAGAAGAAAACAATGGCGATGATGTG CGCGTGGATTGCACATGCGACGgcaaatacagactcaacactaaggctaa gcgggtttttgttacggacagattcggtacgaagaagtacttctgggaat gggaagtatggagACCACAGCGAGCATTCGAGAAACATAGGTATCCCATT CTGCACGACCTGCAAACCACCATGGTGACATGCAGGGGCCTCGGAAAAGA AACGGACGAGCAAAAATTTGCAGATGAATGCGGCTCTGCTGTTGCCGACG ACGGCCTCAGAGGCAACGATTCATTTGCCAACGCAGATGAGCATGTGTAG
back to top

Coding sequence (CDS) from alignment at NODE_2075_length_6946_cov_4.737418:2841..5390+

>Gcaud383.t1 ID=Gcaud383.t1|Name=Gcaud383.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2550bp|location=Sequence derived from alignment at NODE_2075_length_6946_cov_4.737418:2841..5390+ (Gracilaria caudata M_176_S67 male)
ATGTACGTCAACAGCTCCGTGATCGACAATGAGTTCTTCGAATGTGATGT
TCCCTTCCGATTCAATTGGCCTAGGCTGCGTCACCCGGCCAAATGGCTTT
CCTCGGAAGAGCCTTGGTTCACGCCACGCCACGCCGGGAATTCTTCTATT
CGGTACATGATTCCCTTCCTGGCACAGTTTGGAAAGGAGTGGCTTGAGGA
TTGTTCTCGTGCCAAAGAAATCGTTGAGCAAAAGATGGAAATTTCCTCGA
ACGGGGTTTTGATGACATACGCTACGAAACATGCGCAGATGTTAACAACA
GGAGGTGCATTTGAATCCGACGAAGAGAAGATGGATGCCAATTGGTCGAA
TACATGGTCAACTATTCTCACGCACCACGAAATCCGGCTATCTCCGCCTT
CTGAGAAAGGAATGGCAATGCCATTTGGTGGAAAACCAGATGAATTCCAT
GGTTTCTCAAAATACGAATCAAAGATCAAGCGACTTATTGAAAATTTGCC
GGAAGAACTGTTCGAGGTAACTGATTACGGGGACGAAAAAGTCAAAGTTC
TTCAAGGAATTTCAGCATTCCATTTGGAAAGCTTCATGTATTTCTTGCTT
TCAGAAGTAATTCACGTTGTGGGAGAGCAAGCAGTAACGGAAGTCCCACA
TGAAGCCGTGATATTACCCACTACGGACAAAGCAGAAGGAGACATACAGG
ACATTCTCGAAAATGACACATATTTCGGGGTTTCTGACCAAAATATAGAA
AGCTCTTCAACAAGTTTGACAAGAGCACCCTCAGAAAACATGATGGTGGA
CGAAGAAATATCGGACGAAGAAGACGAAGTTCATGATAGAAATGAATGTG
AACAATCCCGAAGCGAGATCGGCACCCGTACAAATGGAACTAGTGAAGAA
CTGCCAGCAGTGGAAGATTTCGCTCTGCGGGCGTTTGAGAGAACCTTTCG
TGAGAAACATTTAGAAGTAAATTCTTACCAGGATATTCTTGAGAACTCTA
ATTATCAGCAGGAGAGGAGATGGCCAGGGTCTTGGTCGGAGGTAAGAGTG
ATGGAATACACGGTTCACTTGGAGAATATTTTCGCTTTATCATATATGGG
TTTGATGGATTCATGGGGGTTTCTAATTGAAAGAAAGGCCTTCAGTCCTG
AGGACCGTCAGTTGTACTACTCTGAACTTTGCCAGGACAGCGACACAGTG
CTGGCTCGAACAGTGGCGGCGGGAAGAATGCTTGTTTCACGGTGCAGGTC
ACTTTGGTATTATTGGAGTATGTGCGATTTGCCGAATAGTGTACCACCCG
CTTTAGGAGATATAGATCACATTGGGCAGTCCGGAGGAGGTCGGATCAAA
TTCATTGGGTACATCATGGAGACAGTGCGCGACTGTTTGGCTAAATGGAC
CGAGCACAACATTACAGAAGATAAGGATACAAGCTCGTGGAGTCCAGTGG
TAGAGACAGAAAGTGCTTGTATACAATTTGATTCGAGTGACGCACTTTCG
AGGCAGATAAGAATGTTGCCAAACTGCCAACTTGAAGCTCACAAATATGC
GTCAGTCTTTCGGACATTTTATGAGCGAGTCGTTTGGGAATGTCAGAAGA
GTATTTTGAAGTTGTTAGACAACGATGAATGTGCATTTGGTCCGTCTGAC
GTGGAGCTGATGATATTATGCATTCTAGGATTCCCTGGTCTTCGAGTGAG
CCTCGCGGATAGATCTGGCGTATCCGAGCTTCCTGGCTTTGAAGTGTTAC
CTCTCATCTGTGGATCAACCTGGGGAGTACGTATTGAATTCAATACGATT
GATGAGAAGTGCGTGAAGGTTCAAATGAGAATAATTCCTGATCGATTCTC
GAGGATTACTTTTGTTTTTGAGTGGGCACGGTGGATACATAACTTTGAAG
CATGGATGAAGGTATTGACATGCGAGTATGATGAGGAGGATCTTTCTGAA
GTTGAGAAAAGCCTCAGTGAATCCTCATTCGAAAACAGTGTTGGCGCAAT
TAGGGCCAATGGAGACAATGTTTCGGGGGCTACCCATGTTTCGGTTGAGG
GTGGGGAAAAAAACGACATCGGTGTTAGTTATTCAAGGAACGAGAGCATG
GAAGATATGGCAGATCATGACCCAACCTCCAATTCGTTTGCAAGCGCTGG
AAGTGATCTTGATGTCGATGTTACTTTGAATAACGAGGAGGAAGAAGCCG
AGCACCAGGAGGACAGAATTGCCGCAGAAGAAAACAATGGCGATGATGTG
CGCGTGGATTGCACATGCGACGgcaaatacagactcaacactaaggctaa
gcgggtttttgttacggacagattcggtacgaagaagtacttctgggaat
gggaagtatggagACCACAGCGAGCATTCGAGAAACATAGGTATCCCATT
CTGCACGACCTGCAAACCACCATGGTGACATGCAGGGGCCTCGGAAAAGA
AACGGACGAGCAAAAATTTGCAGATGAATGCGGCTCTGCTGTTGCCGACG
ACGGCCTCAGAGGCAACGATTCATTTGCCAACGCAGATGAGCATGTGTAG
back to top