Gcaud3809.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3809.t1
Unique Name	Gcaud3809.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_71_length_56537_cov_4.318092	contig	NODE_71_length_56537_cov_4.318092:46018..47172 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3809	Gcaud3809	Gracilaria caudata M_176_S67 male	gene	NODE_71_length_56537_cov_4.318092 46018..47172 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3809.t1	Gcaud3809.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_71_length_56537_cov_4.318092 46018..47172 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3809.t1.stop1	Gcaud3809.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_71_length_56537_cov_4.318092 46018..46020 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3809.t1.CDS1	Gcaud3809.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_71_length_56537_cov_4.318092 46018..46116 -
Gcaud3809.t1.CDS2	Gcaud3809.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_71_length_56537_cov_4.318092 46228..47172 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3809.t1.exon1	Gcaud3809.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_71_length_56537_cov_4.318092 46018..46116 -
Gcaud3809.t1.exon2	Gcaud3809.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_71_length_56537_cov_4.318092 46228..47172 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3809.t1.intron1	Gcaud3809.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_71_length_56537_cov_4.318092 46117..46227 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3809.t1.start1	Gcaud3809.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_71_length_56537_cov_4.318092 47170..47172 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_71_length_56537_cov_4.318092:46018..47172-
coding sequence from alignment at NODE_71_length_56537_cov_4.318092:46018..47172-

mRNA sequence

>Gcaud3809.t1 ID=Gcaud3809.t1|Name=Gcaud3809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp
MAFCVRTIGTPVRNKQTASRAEQGSYPVAALGASHDEHAVSKGVVSLNKL
ISLENELHLGRVLHAVMGKRKPRHHRGKKPAVSLKKMTLRKAEDEDADGE
GEDDDDDDDDSEEDDDSESEEESSEEHKSEESISKTIRTATDAGPGARTS
SEQSGSAGTLDGEGVIDDANVTHIRYMIFKIIKSNKIRSVVDMPCGNSLQ
WFPHLLERIDFELGDFKYYCVDTESQKIDELKQHFGEAGNPEFLSMQPDA
AHGLPKVDMVFSWGGPQQWGVRNTWAFFTALRSVRPKFLMITNNPTVTNT
NDRDGTLNLRKQPFHFGKAMRVISDVTVGEVPKQLLFYKMDGIRRGF*

spliced messenger RNA

>Gcaud3809.t1 ID=Gcaud3809.t1|Name=Gcaud3809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:46018..47172- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTTGCGTACGTACCATTGGTACACCTGTGCGCAACAAACAGAC
GGCATCGCGCGCGGAGCAAGGTTCGTATCCTGTTGCGGCGTTGGGAGCGA
GTCATGATGAGCACGCAGTATCCAAGGGAGTCGTCTCCCTAAACAAGCTG
ATTTCGTTGGAGAATGAACTGCATCTCGGACGCGTGTTGCATGCAGTGAT
GGGGAAGCGCAAGCCTCGTCACCATCGTGGCAAGAAGCCAGCAGTTTCAC
TCAAGAAGATGACGTTACGAAAGGCGGAGGACGAAGACGCTGATGGCGAG
GGCGAAGACGATGACGATGACGATGATGATTCAGAGGAAGACGACGATTC
GGAGTCGGAAGAAGAATCCTCTGAGGAACACAAATCAGAGGAAAGCATTT
CGAAGACAATTCGTACTGCCACAGACGCCGGGCCGGGCGCAAGGACAAGC
AGCGAACAGTCTGGTTCGGCAGGCACGCTAGACGGTGAGGGCGTGATAGA
TGATGCGAATGTGACTCATATCAGATATATGATCTTCAAAATCATCAAAT
CGAACAAGATTCGATCGGTTGTGGATATGCCGTGTGGCAACTCTCTGCAA
TGGTTCCCCCATCTGTTGGAACGAATTGATTTTGAGTTGGGCGATTTCAA
GTACTACTGTGTGGACACGGAAAGCCAGAAGATTGATGAATTGAAACAGC
ATTTCGGGGAAGCCGGGAATCCGGAATTCCTGTCAATGCAGCCTGACGCG
GCACATGGATTGCCCAAAGTTGATATGGTGTTCAGCTGGGGTGGACCTCA
GCAGTGGGGTGTGCGTAATACGTGGGCATTCTTCACAGCTTTGCGGAGTG
TGCGACCGAAATTCCTGATGATCACCAATAATCCGACGGTGACAAACACG
AATGACCGTGACGGAACTCTGAATCTCCGCAAACAACCATTTCATTTCGG
CAAGGCGATGAGGGTGATTTCTGACGTGACTGTTGGAGAGGTTCCCAAGC
AATTGCTGTTCTACAAGATGGATGGAATTCGCAGAGGCTTTTGA

protein sequence of Gcaud3809.t1

>Gcaud3809.t1 ID=Gcaud3809.t1|Name=Gcaud3809.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MAFCVRTIGTPVRNKQTASRAEQGSYPVAALGASHDEHAVSKGVVSLNKL
ISLENELHLGRVLHAVMGKRKPRHHRGKKPAVSLKKMTLRKAEDEDADGE
GEDDDDDDDDSEEDDDSESEEESSEEHKSEESISKTIRTATDAGPGARTS
SEQSGSAGTLDGEGVIDDANVTHIRYMIFKIIKSNKIRSVVDMPCGNSLQ
WFPHLLERIDFELGDFKYYCVDTESQKIDELKQHFGEAGNPEFLSMQPDA
AHGLPKVDMVFSWGGPQQWGVRNTWAFFTALRSVRPKFLMITNNPTVTNT
NDRDGTLNLRKQPFHFGKAMRVISDVTVGEVPKQLLFYKMDGIRRGF*

mRNA from alignment at NODE_71_length_56537_cov_4.318092:46018..47172-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3809.t1 ID=Gcaud3809.t1|Name=Gcaud3809.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:46018..47172- (Gracilaria caudata M_176_S67 male)
ATGGCTTTTTGCGTACGTACCATTGGTACACCTGTGCGCAACAAACAGAC
GGCATCGCGCGCGGAGCAAGGTTCGTATCCTGTTGCGGCGTTGGGAGCGA
GTCATGATGAGCACGCAGTATCCAAGGGAGTCGTCTCCCTAAACAAGCTG
ATTTCGTTGGAGAATGAACTGCATCTCGGACGCGTGTTGCATGCAGTGAT
GGGGAAGCGCAAGCCTCGTCACCATCGTGGCAAGAAGCCAGCAGTTTCAC
TCAAGAAGATGACGTTACGAAAGGCGGAGGACGAAGACGCTGATGGCGAG
GGCGAAGACGATGACGATGACGATGATGATTCAGAGGAAGACGACGATTC
GGAGTCGGAAGAAGAATCCTCTGAGGAACACAAATCAGAGGAAAGCATTT
CGAAGACAATTCGTACTGCCACAGACGCCGGGCCGGGCGCAAGGACAAGC
AGCGAACAGTCTGGTTCGGCAGGCACGCTAGACGGTGAGGGCGTGATAGA
TGATGCGAATGTGACTCATATCAGATATATGATCTTCAAAATCATCAAAT
CGAACAAGATTCGATCGGTTGTGGATATGCCGTGTGGCAACTCTCTGCAA
TGGTTCCCCCATCTGTTGGAACGAATTGATTTTGAGTTGGGCGATTTCAA
GTACTACTGTGTGGACACGGAAAGCCAGAAGATTGATGAATTGAAACAGC
ATTTCGGGGAAGCCGGGAATCCGGAATTCCTGTCAATGCAGCCTGACGCG
GCACATGGATTGCCCAAAGTTGATATGGTGTTCAGCTGGGGTGGACCTCA
GCAGTGGGGTGTGCGTAATACGTGGGCATTCTTCACAGCTTTGCGGAGTG
TGCGACCGAAATTCCTGATGATCACCAATAATCCGACGGTGACAAACACG
AATGACCGTGACGGAACTCTGAATCTCCGCAAACAACCATTTCATGTAAG
CTATTTTTTATGTCTTTTTTTTTATTCGCGCGGACATGTTCGTGTATGAC
TGTGTAAGGCATTGGTCAACTAACGTTTCATTTTTGTTTGTGTGTGATGA
GCACAGTTCGGCAAGGCGATGAGGGTGATTTCTGACGTGACTGTTGGAGA
GGTTCCCAAGCAATTGCTGTTCTACAAGATGGATGGAATTCGCAGAGGCT
TTTGA

Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:46018..47172-

>Gcaud3809.t1 ID=Gcaud3809.t1|Name=Gcaud3809.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1044bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:46018..47172- (Gracilaria caudata M_176_S67 male)
ATGGCTTTTTGCGTACGTACCATTGGTACACCTGTGCGCAACAAACAGAC
GGCATCGCGCGCGGAGCAAGGTTCGTATCCTGTTGCGGCGTTGGGAGCGA
GTCATGATGAGCACGCAGTATCCAAGGGAGTCGTCTCCCTAAACAAGCTG
ATTTCGTTGGAGAATGAACTGCATCTCGGACGCGTGTTGCATGCAGTGAT
GGGGAAGCGCAAGCCTCGTCACCATCGTGGCAAGAAGCCAGCAGTTTCAC
TCAAGAAGATGACGTTACGAAAGGCGGAGGACGAAGACGCTGATGGCGAG
GGCGAAGACGATGACGATGACGATGATGATTCAGAGGAAGACGACGATTC
GGAGTCGGAAGAAGAATCCTCTGAGGAACACAAATCAGAGGAAAGCATTT
CGAAGACAATTCGTACTGCCACAGACGCCGGGCCGGGCGCAAGGACAAGC
AGCGAACAGTCTGGTTCGGCAGGCACGCTAGACGGTGAGGGCGTGATAGA
TGATGCGAATGTGACTCATATCAGATATATGATCTTCAAAATCATCAAAT
CGAACAAGATTCGATCGGTTGTGGATATGCCGTGTGGCAACTCTCTGCAA
TGGTTCCCCCATCTGTTGGAACGAATTGATTTTGAGTTGGGCGATTTCAA
GTACTACTGTGTGGACACGGAAAGCCAGAAGATTGATGAATTGAAACAGC
ATTTCGGGGAAGCCGGGAATCCGGAATTCCTGTCAATGCAGCCTGACGCG
GCACATGGATTGCCCAAAGTTGATATGGTGTTCAGCTGGGGTGGACCTCA
GCAGTGGGGTGTGCGTAATACGTGGGCATTCTTCACAGCTTTGCGGAGTG
TGCGACCGAAATTCCTGATGATCACCAATAATCCGACGGTGACAAACACG
AATGACCGTGACGGAACTCTGAATCTCCGCAAACAACCATTTCATTTCGG
CAAGGCGATGAGGGTGATTTCTGACGTGACTGTTGGAGAGGTTCCCAAGC
AATTGCTGTTCTACAAGATGGATGGAATTCGCAGAGGCTTTTGA