Gcaud3807.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3807.t1
Unique Name	Gcaud3807.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	373

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_71_length_56537_cov_4.318092	contig	NODE_71_length_56537_cov_4.318092:41940..43058 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN264CT
PFAMs	AIRS,AIRS_C
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC01100
KEGG ko	ko:K01933
KEGG Reaction	R04208
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
KEGG Module	M00048
Evalue	2.87e-139
EggNOG OGs	COG0151@1\|root,KOG0237@2759\|Eukaryota
EC	6.3.3.1
Description	phosphoribosylamine-glycine ligase activity
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3807	Gcaud3807	Gracilaria caudata M_176_S67 male	gene	NODE_71_length_56537_cov_4.318092 41940..43058 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3807.t1.start1	Gcaud3807.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_71_length_56537_cov_4.318092 41940..41942 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3807.t1.CDS1	Gcaud3807.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_71_length_56537_cov_4.318092 41940..43058 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3807.t1.exon1	Gcaud3807.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_71_length_56537_cov_4.318092 41940..43058 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3807.t1.stop1	Gcaud3807.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_71_length_56537_cov_4.318092 43056..43058 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3807.t1	Gcaud3807.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_71_length_56537_cov_4.318092 41940..43058 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+
coding sequence from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+

mRNA sequence

>Gcaud3807.t1 ID=Gcaud3807.t1|Name=Gcaud3807.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=373bp
MSKNDSLTYASSGVDIETESASIKSLISSLGPIAHRKPGTLGAPVAHSGG
FSGLIEFGDNLLALCTDGVGSKLLLAAEMGAYDTVAIDCMAMNVNDLLCI
GAEPLAFVDYIAAPQPKKETWAALGRGLGEACRRARVSLCGGETASLPDM
VREIDVSGTALGWIPKGMQLEGKVKSGDKIIGLPSSGIHSNGYSLVRKIL
NKSGASISDSAPFEIGRRGGGIWRHYDGEVTLGEVLLNPTKIYVDPVSDL
LEACRKGLGPCVYDDIHGIAHITGGGLSNLLRLGADIGFVIDNPLPELPE
FKWLQDTGDISEFEMWRTFNMGMGMALIVSEKSCAAVSSWLEKRLEGSRA
VGYVDCERRVLQATNGVVFDKY*

spliced messenger RNA

>Gcaud3807.t1 ID=Gcaud3807.t1|Name=Gcaud3807.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAAGAATGACTCTTTAACCTACGCTTCATCGGGCGTTGATATTGA
AACCGAATCCGCCAGCATTAAATCGCTCATCTCCTCTCTTGGTCCAATTG
CTCACCGCAAGCCAGGTACTCTTGGTGCTCCGGTTGCTCACTCTGGAGGC
TTTTCTGGTCTAATTGAATTCGGTGACAACCTCCTCGCTCTTTGTACTGA
TGGAGTGGGAAGCAAACTTTTGCTCGCAGCTGAGATGGGTGCGTATGACA
CGGTTGCCATAGATTGTATGGCGATGAATGTTAATGATTTGCTGTGTATT
GGCGCGGAACCATTAGCATTTGTAGACTACATTGCTGCACCGCAGCCGAA
AAAGGAAACCTGGGCTGCTCTAGGAAGAGGTTTAGGCGAAGCATGCCGAC
GGGCGCGAGTGAGCCTCTGTGGGGGAGAGACGGCGAGTTTGCCGGACATG
GTTCGTGAAATAGACGTTAGTGGGACTGCGCTAGGTTGGATACCGAAAGG
AATGCAATTGGAAGGAAAAGTTAAAAGTGGCGATAAGATCATCGGGCTAC
CATCTTCTGGAATTCATTCTAACGGATATTCGCTTGTGAGAAAGATCTTG
AATAAAAGCGGTGCATCAATCTCAGATAGCGCTCCGTTTGAAATTGGAAG
ACGGGGTGGTGGGATATGGCGCCATTATGATGGAGAGGTGACTCTGGGAG
AGGTGCTCCTGAATCCAACCAAAATTTACGTTGATCCAGTATCGGACCTA
CTTGAGGCTTGTCGGAAAGGCCTCGGACCATGTGTATATGATGACATTCA
CGGCATCGCTCACATCACCGGTGGTGGGCTATCGAACCTACTCCGTTTAG
GAGCTGACATCGGATTTGTCATCGACAACCCATTACCAGAGTTGCCGGAG
TTCAAGTGGCTGCAGGATACTGGCGACATTTCAGAGTTTGAGATGTGGCG
AACTTTCAATATGGGCATGGGCATGGCTCTCATTGTGTCAGAGAAATCGT
GTGCCGCGGTTTCAAGCTGGCTTGAAAAGCGGCTAGAGGGTTCAAGAGCA
GTTGGGTACGTAGACTGTGAGCGAAGAGTGCTTCAAGCTACGAACGGTGT
TGTTTTCGACAAGTATTAG

protein sequence of Gcaud3807.t1

>Gcaud3807.t1 ID=Gcaud3807.t1|Name=Gcaud3807.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=373bp
MSKNDSLTYASSGVDIETESASIKSLISSLGPIAHRKPGTLGAPVAHSGG
FSGLIEFGDNLLALCTDGVGSKLLLAAEMGAYDTVAIDCMAMNVNDLLCI
GAEPLAFVDYIAAPQPKKETWAALGRGLGEACRRARVSLCGGETASLPDM
VREIDVSGTALGWIPKGMQLEGKVKSGDKIIGLPSSGIHSNGYSLVRKIL
NKSGASISDSAPFEIGRRGGGIWRHYDGEVTLGEVLLNPTKIYVDPVSDL
LEACRKGLGPCVYDDIHGIAHITGGGLSNLLRLGADIGFVIDNPLPELPE
FKWLQDTGDISEFEMWRTFNMGMGMALIVSEKSCAAVSSWLEKRLEGSRA
VGYVDCERRVLQATNGVVFDKY*

mRNA from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3807.t1 ID=Gcaud3807.t1|Name=Gcaud3807.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+ (Gracilaria caudata M_176_S67 male)
ATGTCGAAGAATGACTCTTTAACCTACGCTTCATCGGGCGTTGATATTGA
AACCGAATCCGCCAGCATTAAATCGCTCATCTCCTCTCTTGGTCCAATTG
CTCACCGCAAGCCAGGTACTCTTGGTGCTCCGGTTGCTCACTCTGGAGGC
TTTTCTGGTCTAATTGAATTCGGTGACAACCTCCTCGCTCTTTGTACTGA
TGGAGTGGGAAGCAAACTTTTGCTCGCAGCTGAGATGGGTGCGTATGACA
CGGTTGCCATAGATTGTATGGCGATGAATGTTAATGATTTGCTGTGTATT
GGCGCGGAACCATTAGCATTTGTAGACTACATTGCTGCACCGCAGCCGAA
AAAGGAAACCTGGGCTGCTCTAGGAAGAGGTTTAGGCGAAGCATGCCGAC
GGGCGCGAGTGAGCCTCTGTGGGGGAGAGACGGCGAGTTTGCCGGACATG
GTTCGTGAAATAGACGTTAGTGGGACTGCGCTAGGTTGGATACCGAAAGG
AATGCAATTGGAAGGAAAAGTTAAAAGTGGCGATAAGATCATCGGGCTAC
CATCTTCTGGAATTCATTCTAACGGATATTCGCTTGTGAGAAAGATCTTG
AATAAAAGCGGTGCATCAATCTCAGATAGCGCTCCGTTTGAAATTGGAAG
ACGGGGTGGTGGGATATGGCGCCATTATGATGGAGAGGTGACTCTGGGAG
AGGTGCTCCTGAATCCAACCAAAATTTACGTTGATCCAGTATCGGACCTA
CTTGAGGCTTGTCGGAAAGGCCTCGGACCATGTGTATATGATGACATTCA
CGGCATCGCTCACATCACCGGTGGTGGGCTATCGAACCTACTCCGTTTAG
GAGCTGACATCGGATTTGTCATCGACAACCCATTACCAGAGTTGCCGGAG
TTCAAGTGGCTGCAGGATACTGGCGACATTTCAGAGTTTGAGATGTGGCG
AACTTTCAATATGGGCATGGGCATGGCTCTCATTGTGTCAGAGAAATCGT
GTGCCGCGGTTTCAAGCTGGCTTGAAAAGCGGCTAGAGGGTTCAAGAGCA
GTTGGGTACGTAGACTGTGAGCGAAGAGTGCTTCAAGCTACGAACGGTGT
TGTTTTCGACAAGTATTAG

Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+

>Gcaud3807.t1 ID=Gcaud3807.t1|Name=Gcaud3807.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1119bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:41940..43058+ (Gracilaria caudata M_176_S67 male)
ATGTCGAAGAATGACTCTTTAACCTACGCTTCATCGGGCGTTGATATTGA
AACCGAATCCGCCAGCATTAAATCGCTCATCTCCTCTCTTGGTCCAATTG
CTCACCGCAAGCCAGGTACTCTTGGTGCTCCGGTTGCTCACTCTGGAGGC
TTTTCTGGTCTAATTGAATTCGGTGACAACCTCCTCGCTCTTTGTACTGA
TGGAGTGGGAAGCAAACTTTTGCTCGCAGCTGAGATGGGTGCGTATGACA
CGGTTGCCATAGATTGTATGGCGATGAATGTTAATGATTTGCTGTGTATT
GGCGCGGAACCATTAGCATTTGTAGACTACATTGCTGCACCGCAGCCGAA
AAAGGAAACCTGGGCTGCTCTAGGAAGAGGTTTAGGCGAAGCATGCCGAC
GGGCGCGAGTGAGCCTCTGTGGGGGAGAGACGGCGAGTTTGCCGGACATG
GTTCGTGAAATAGACGTTAGTGGGACTGCGCTAGGTTGGATACCGAAAGG
AATGCAATTGGAAGGAAAAGTTAAAAGTGGCGATAAGATCATCGGGCTAC
CATCTTCTGGAATTCATTCTAACGGATATTCGCTTGTGAGAAAGATCTTG
AATAAAAGCGGTGCATCAATCTCAGATAGCGCTCCGTTTGAAATTGGAAG
ACGGGGTGGTGGGATATGGCGCCATTATGATGGAGAGGTGACTCTGGGAG
AGGTGCTCCTGAATCCAACCAAAATTTACGTTGATCCAGTATCGGACCTA
CTTGAGGCTTGTCGGAAAGGCCTCGGACCATGTGTATATGATGACATTCA
CGGCATCGCTCACATCACCGGTGGTGGGCTATCGAACCTACTCCGTTTAG
GAGCTGACATCGGATTTGTCATCGACAACCCATTACCAGAGTTGCCGGAG
TTCAAGTGGCTGCAGGATACTGGCGACATTTCAGAGTTTGAGATGTGGCG
AACTTTCAATATGGGCATGGGCATGGCTCTCATTGTGTCAGAGAAATCGT
GTGCCGCGGTTTCAAGCTGGCTTGAAAAGCGGCTAGAGGGTTCAAGAGCA
GTTGGGTACGTAGACTGTGAGCGAAGAGTGCTTCAAGCTACGAACGGTGT
TGTTTTCGACAAGTATTAG