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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 3880.AES86532 |
| PFAMs | KIX_2 |
| Max annot lvl | 35493|Streptophyta |
| Evalue | 4.89e-06 |
| EggNOG OGs | 2EK0J@1|root,2SQ1A@2759|Eukaryota,37ZRC@33090|Viridiplantae,3GPMT@35493|Streptophyta |
| Description | KIX domain |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3797.t1.start1 | Gcaud3797.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_71_length_56537_cov_4.318092 14389..14391 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3797.t1.stop1 | Gcaud3797.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_71_length_56537_cov_4.318092 15296..15298 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3797.t1 ID=Gcaud3797.t1|Name=Gcaud3797.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=227bp
MDSLQGRWKSELTKDDRIKVCQHILDKLVEACPPNFDHEALKTRTRRFEM
GVFQTAASRQDYLERIAESLSQIEQMTWKLKWTKEDRDNIFHHTEDNLVE
ACQPTFNHENLGVQNRRCGMGTSQAATSRQDRADCLGDWHAIAEVLSQIQ
ERDWKRQMTKDDRIKVCQHILDKLVDACPPNIDHEILKTRTRRFEMGVFQ
TAASRQDYLERIAEGLTRIQEQSQRA* back to topspliced messenger RNA >Gcaud3797.t1 ID=Gcaud3797.t1|Name=Gcaud3797.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=681bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:14389..15298+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGACTCCCTACAGGGCCGCTGGAAAAGCGAGCTGACCAAGGACGACCG
TATCAAAGTCTGTCAACACATCCTAGACAAATTAGTCGAGGCTTGCCCAC
CTAATTTCGATCACGAAGCCCTCAAAACTCGAACCCGTCGCTTTGAAATG
GGCGTATTTCAGACAGCCGCCAGTCGACAGGACTACCTGGAACGAATAGC
TGAGAGTCTTTCTCAAATCGAACAAATGACTTGGAAACTCAAATGGACCA
AGGAAGACCGTGACAACATCTTCCACCACACCGAAGACAATCTAGTCGAG
GCTTGCCAACCTACTTTCAATCACGAAAATCTTGGAGTTCAAAATCGTCG
CTGCGGAATGGGCACATCTCAAGCAGCTACCAGTCGTCAAGATCGTGCAG
ATTGTCTTGGCGACTGGCACGCAATAGCTGAAGTTCTTAGCCAAATCCAA
GAACGAGACTGGAAACGCCAGATGACCAAGGACGACCGTATCAAAGTCTG
TCAACACATCCTAGACAAATTAGTCGATGCTTGCCCACCTAATATCGATC
ACGAAATCCTTAAAACTCGAACCCGTCGCTTTGAAATGGGCGTATTTCAG
ACAGCCGCCAGTCGTCAGGACTATCTAGAACGAATAGCTGAGGGTCTTAC
TCGAATCCAAGAACAGAGTCAGCGCGCTTAA back to topprotein sequence of Gcaud3797.t1 >Gcaud3797.t1 ID=Gcaud3797.t1|Name=Gcaud3797.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=227bp
MDSLQGRWKSELTKDDRIKVCQHILDKLVEACPPNFDHEALKTRTRRFEM
GVFQTAASRQDYLERIAESLSQIEQMTWKLKWTKEDRDNIFHHTEDNLVE
ACQPTFNHENLGVQNRRCGMGTSQAATSRQDRADCLGDWHAIAEVLSQIQ
ERDWKRQMTKDDRIKVCQHILDKLVDACPPNIDHEILKTRTRRFEMGVFQ
TAASRQDYLERIAEGLTRIQEQSQRA* back to topmRNA from alignment at NODE_71_length_56537_cov_4.318092:14389..15298+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3797.t1 ID=Gcaud3797.t1|Name=Gcaud3797.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=910bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:14389..15298+ (Gracilaria caudata M_176_S67 male)
ATGGACTCCCTACAGGGCCGCTGGAAAAGCGAGCTGACCAAGGACGACCG
TATCAAAGTCTGTCAACACATCCTAGACAAATTAGTCGGTACGTCGTGGT
CTTCTTGCTACAAACATATTCTTTTCCATGCCTACTAACATTTTTCTGCT
CCTATACTCCACAGAGGCTTGCCCACCTAATTTCGATCACGAAGCCCTCA
AAACTCGAACCCGTCGCTTTGAAATGGGCGTATTTCAGACAGCCGCCAGT
CGACAGGACTACCTGGAACGAATAGCTGAGAGTCTTTCTCAAATCGAACA
AATGACTTGGAAACTCAAATGGACCAAGGAAGACCGTGACAACATCTTCC
ACCACACCGAAGACAATCTAGTCGGTACGTCATGGCCCTCTCTTCACTGC
AGATGTCTTCTTTTCATGCCTATTCACCTTTTCTGCTTTCATCTTCCACA
GAGGCTTGCCAACCTACTTTCAATCACGAAAATCTTGGAGTTCAAAATCG
TCGCTGCGGAATGGGCACATCTCAAGCAGCTACCAGTCGTCAAGATCGTG
CAGATTGTCTTGGCGACTGGCACGCAATAGCTGAAGTTCTTAGCCAAATC
CAAGAACGAGACTGGAAACGCCAGATGACCAAGGACGACCGTATCAAAGT
CTGTCAACACATCCTAGACAAATTAGTCGGTACGTCGTGGTCTTCTACCT
ACAAACATATTCTTTTCCATGCCTACTAACATTTTTCTGCTTCTACACTC
CACAGATGCTTGCCCACCTAATATCGATCACGAAATCCTTAAAACTCGAA
CCCGTCGCTTTGAAATGGGCGTATTTCAGACAGCCGCCAGTCGTCAGGAC
TATCTAGAACGAATAGCTGAGGGTCTTACTCGAATCCAAGAACAGAGTCA
GCGCGCTTAA back to topCoding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:14389..15298+ >Gcaud3797.t1 ID=Gcaud3797.t1|Name=Gcaud3797.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=681bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:14389..15298+ (Gracilaria caudata M_176_S67 male)
ATGGACTCCCTACAGGGCCGCTGGAAAAGCGAGCTGACCAAGGACGACCG
TATCAAAGTCTGTCAACACATCCTAGACAAATTAGTCGAGGCTTGCCCAC
CTAATTTCGATCACGAAGCCCTCAAAACTCGAACCCGTCGCTTTGAAATG
GGCGTATTTCAGACAGCCGCCAGTCGACAGGACTACCTGGAACGAATAGC
TGAGAGTCTTTCTCAAATCGAACAAATGACTTGGAAACTCAAATGGACCA
AGGAAGACCGTGACAACATCTTCCACCACACCGAAGACAATCTAGTCGAG
GCTTGCCAACCTACTTTCAATCACGAAAATCTTGGAGTTCAAAATCGTCG
CTGCGGAATGGGCACATCTCAAGCAGCTACCAGTCGTCAAGATCGTGCAG
ATTGTCTTGGCGACTGGCACGCAATAGCTGAAGTTCTTAGCCAAATCCAA
GAACGAGACTGGAAACGCCAGATGACCAAGGACGACCGTATCAAAGTCTG
TCAACACATCCTAGACAAATTAGTCGATGCTTGCCCACCTAATATCGATC
ACGAAATCCTTAAAACTCGAACCCGTCGCTTTGAAATGGGCGTATTTCAG
ACAGCCGCCAGTCGTCAGGACTATCTAGAACGAATAGCTGAGGGTCTTAC
TCGAATCCAAGAACAGAGTCAGCGCGCTTAA back to top
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