Gcaud3796.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3796.t1
Unique Name	Gcaud3796.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	362

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_71_length_56537_cov_4.318092	contig	NODE_71_length_56537_cov_4.318092:12026..13111 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3711.Bra024999.1-P
PFAMs	ArfGap
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12493
KEGG Pathway	ko04144,map04144
GOs	GO:0001101,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0033993,GO:0042221,GO:0050896,GO:0097305,GO:1901700
Evalue	1.04e-36
EggNOG OGs	COG5347@1\|root,KOG0706@2759\|Eukaryota,37IHX@33090\|Viridiplantae,3G9G7@35493\|Streptophyta,3HWY1@3699\|Brassicales
Description	ADP-ribosylation factor GTPase-activating protein AGD9
COG category	T
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3796	Gcaud3796	Gracilaria caudata M_176_S67 male	gene	NODE_71_length_56537_cov_4.318092 12026..13111 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3796.t1.start1	Gcaud3796.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_71_length_56537_cov_4.318092 12026..12028 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3796.t1.CDS1	Gcaud3796.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_71_length_56537_cov_4.318092 12026..13111 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3796.t1.exon1	Gcaud3796.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_71_length_56537_cov_4.318092 12026..13111 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3796.t1.stop1	Gcaud3796.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_71_length_56537_cov_4.318092 13109..13111 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3796.t1	Gcaud3796.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_71_length_56537_cov_4.318092 12026..13111 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+
coding sequence from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+

mRNA sequence

>Gcaud3796.t1 ID=Gcaud3796.t1|Name=Gcaud3796.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=362bp
MAPPVASEIAYDSKTVLRRLCTRLDNKTCFDCSAKNPTWASTRFGVFICL
DCSGSHRNLGTHITFVRSASMDTWSKQDLSRMVNGGNAKARRFWKDHGWH
DFSGFHADKYTGRIANSYKSTLERLVAQTSSEADASQLANAMAAVSVAEQ
PPAQSTTVKIDPGVLKETQAQTTVVVPPKPKRPSSITISAPVAADASITS
SRRPTRKSGGLGARRKASTSKSSTTSIDWTKVGSDVPPGPPVPKLPPKPK
GHPEPKETNVTSMSSEQFAERFRGKKAISSDDFAPHNGTTQDYSQRYANV
STLSSSDLFPPHSSYSSNNPPVEDGLAGLADDFIRAASEGVAQAADEVST
AFSDFLNKGYA*

spliced messenger RNA

>Gcaud3796.t1 ID=Gcaud3796.t1|Name=Gcaud3796.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCCAGTGGCTTCGGAAATCGCCTACGACTCGAAGACCGTTTT
GCGCCGTCTTTGTACTCGGCTCGACAACAAGACATGTTTCGACTGCTCTG
CGAAGAATCCGACATGGGCTTCAACTCGCTTCGGCGTTTTCATATGTCTT
GATTGCTCCGGAAGTCACCGTAATCTCGGAACTCATATCACTTTTGTTCG
GTCGGCCTCAATGGATACTTGGTCAAAACAAGACTTGTCTCGAATGGTCA
ACGGCGGAAATGCAAAGGCGAGGAGATTTTGGAAGGACCATGGTTGGCAT
GATTTTTCCGGCTTTCATGCTGACAAGTACACTGGTCGCATTGCCAACTC
GTACAAGTCCACTTTGGAGCGTCTTGTTGCTCAAACTTCCTCTGAAGCCG
ATGCTTCACAACTTGCCAACGCCATGGCCGCGGTGTCCGTGGCGGAGCAA
CCCCCAGCTCAATCCACTACTGTGAAGATAGACCCGGGTGTCTTGAAGGA
AACCCAAGCGCAGACCACTGTCGTCGTTCCACCCAAACCGAAGCGCCCGT
CATCTATTACCATTTCCGCCCCCGTCGCTGCAGATGCGTCTATCACTTCC
AGCAGGAGACCCACCAGAAAGAGCGGTGGTTTGGGTGCTAGACGGAAAGC
TTCTACCTCTAAGAGTTCGACCACCTCCATCGACTGGACAAAAGTAGGAT
CTGATGTACCACCTGGACCACCGGTTCCAAAACTTCCACCAAAACCAAAA
GGCCATCCTGAACCAAAGGAAACGAATGTTACATCCATGAGTTCCGAGCA
GTTTGCGGAAAGATTCCGCGGTAAGAAGGCTATCTCATCAGATGATTTTG
CACCTCATAACGGCACTACTCAAGATTATTCGCAACGTTATGCAAACGTT
TCCACTCTCTCTTCGTCAGACCTATTCCCGCCACACTCTTCATATTCTTC
TAATAATCCTCCTGTTGAAGATGGACTTGCAGGTCTTGCGGATGATTTCA
TCAGAGCAGCATCAGAGGGAGTCGCACAGGCTGCCGACGAAGTTTCTACC
GCTTTTTCTGATTTTCTTAACAAAGGCTACGCGTAA

protein sequence of Gcaud3796.t1

>Gcaud3796.t1 ID=Gcaud3796.t1|Name=Gcaud3796.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=362bp
MAPPVASEIAYDSKTVLRRLCTRLDNKTCFDCSAKNPTWASTRFGVFICL
DCSGSHRNLGTHITFVRSASMDTWSKQDLSRMVNGGNAKARRFWKDHGWH
DFSGFHADKYTGRIANSYKSTLERLVAQTSSEADASQLANAMAAVSVAEQ
PPAQSTTVKIDPGVLKETQAQTTVVVPPKPKRPSSITISAPVAADASITS
SRRPTRKSGGLGARRKASTSKSSTTSIDWTKVGSDVPPGPPVPKLPPKPK
GHPEPKETNVTSMSSEQFAERFRGKKAISSDDFAPHNGTTQDYSQRYANV
STLSSSDLFPPHSSYSSNNPPVEDGLAGLADDFIRAASEGVAQAADEVST
AFSDFLNKGYA*

mRNA from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3796.t1 ID=Gcaud3796.t1|Name=Gcaud3796.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1086bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCGCCAGTGGCTTCGGAAATCGCCTACGACTCGAAGACCGTTTT
GCGCCGTCTTTGTACTCGGCTCGACAACAAGACATGTTTCGACTGCTCTG
CGAAGAATCCGACATGGGCTTCAACTCGCTTCGGCGTTTTCATATGTCTT
GATTGCTCCGGAAGTCACCGTAATCTCGGAACTCATATCACTTTTGTTCG
GTCGGCCTCAATGGATACTTGGTCAAAACAAGACTTGTCTCGAATGGTCA
ACGGCGGAAATGCAAAGGCGAGGAGATTTTGGAAGGACCATGGTTGGCAT
GATTTTTCCGGCTTTCATGCTGACAAGTACACTGGTCGCATTGCCAACTC
GTACAAGTCCACTTTGGAGCGTCTTGTTGCTCAAACTTCCTCTGAAGCCG
ATGCTTCACAACTTGCCAACGCCATGGCCGCGGTGTCCGTGGCGGAGCAA
CCCCCAGCTCAATCCACTACTGTGAAGATAGACCCGGGTGTCTTGAAGGA
AACCCAAGCGCAGACCACTGTCGTCGTTCCACCCAAACCGAAGCGCCCGT
CATCTATTACCATTTCCGCCCCCGTCGCTGCAGATGCGTCTATCACTTCC
AGCAGGAGACCCACCAGAAAGAGCGGTGGTTTGGGTGCTAGACGGAAAGC
TTCTACCTCTAAGAGTTCGACCACCTCCATCGACTGGACAAAAGTAGGAT
CTGATGTACCACCTGGACCACCGGTTCCAAAACTTCCACCAAAACCAAAA
GGCCATCCTGAACCAAAGGAAACGAATGTTACATCCATGAGTTCCGAGCA
GTTTGCGGAAAGATTCCGCGGTAAGAAGGCTATCTCATCAGATGATTTTG
CACCTCATAACGGCACTACTCAAGATTATTCGCAACGTTATGCAAACGTT
TCCACTCTCTCTTCGTCAGACCTATTCCCGCCACACTCTTCATATTCTTC
TAATAATCCTCCTGTTGAAGATGGACTTGCAGGTCTTGCGGATGATTTCA
TCAGAGCAGCATCAGAGGGAGTCGCACAGGCTGCCGACGAAGTTTCTACC
GCTTTTTCTGATTTTCTTAACAAAGGCTACGCGTAA

Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+

>Gcaud3796.t1 ID=Gcaud3796.t1|Name=Gcaud3796.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1086bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:12026..13111+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCGCCAGTGGCTTCGGAAATCGCCTACGACTCGAAGACCGTTTT
GCGCCGTCTTTGTACTCGGCTCGACAACAAGACATGTTTCGACTGCTCTG
CGAAGAATCCGACATGGGCTTCAACTCGCTTCGGCGTTTTCATATGTCTT
GATTGCTCCGGAAGTCACCGTAATCTCGGAACTCATATCACTTTTGTTCG
GTCGGCCTCAATGGATACTTGGTCAAAACAAGACTTGTCTCGAATGGTCA
ACGGCGGAAATGCAAAGGCGAGGAGATTTTGGAAGGACCATGGTTGGCAT
GATTTTTCCGGCTTTCATGCTGACAAGTACACTGGTCGCATTGCCAACTC
GTACAAGTCCACTTTGGAGCGTCTTGTTGCTCAAACTTCCTCTGAAGCCG
ATGCTTCACAACTTGCCAACGCCATGGCCGCGGTGTCCGTGGCGGAGCAA
CCCCCAGCTCAATCCACTACTGTGAAGATAGACCCGGGTGTCTTGAAGGA
AACCCAAGCGCAGACCACTGTCGTCGTTCCACCCAAACCGAAGCGCCCGT
CATCTATTACCATTTCCGCCCCCGTCGCTGCAGATGCGTCTATCACTTCC
AGCAGGAGACCCACCAGAAAGAGCGGTGGTTTGGGTGCTAGACGGAAAGC
TTCTACCTCTAAGAGTTCGACCACCTCCATCGACTGGACAAAAGTAGGAT
CTGATGTACCACCTGGACCACCGGTTCCAAAACTTCCACCAAAACCAAAA
GGCCATCCTGAACCAAAGGAAACGAATGTTACATCCATGAGTTCCGAGCA
GTTTGCGGAAAGATTCCGCGGTAAGAAGGCTATCTCATCAGATGATTTTG
CACCTCATAACGGCACTACTCAAGATTATTCGCAACGTTATGCAAACGTT
TCCACTCTCTCTTCGTCAGACCTATTCCCGCCACACTCTTCATATTCTTC
TAATAATCCTCCTGTTGAAGATGGACTTGCAGGTCTTGCGGATGATTTCA
TCAGAGCAGCATCAGAGGGAGTCGCACAGGCTGCCGACGAAGTTTCTACC
GCTTTTTCTGATTTTCTTAACAAAGGCTACGCGTAA