Gcaud3795.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3795.t1
Unique NameGcaud3795.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_71_length_56537_cov_4.318092contigNODE_71_length_56537_cov_4.318092:9944..11336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704736.1
Preferred nameCCP1
PFAMsperoxidase
Max annot lvl2759|Eukaryota
KEGG koko:K00428
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004130,GO:0004601,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005829,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009056,GO:0009636,GO:0009987,GO:0016209,GO:0016491,GO:0016684,GO:0016999,GO:0017001,GO:0017144,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0033554,GO:0034599,GO:0034614,GO:0042221,GO:0042737,GO:0042743,GO:0042744,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051186,GO:0051187,GO:0051716,GO:0055114,GO:0070013,GO:0070887,GO:0072593,GO:0097237,GO:0098754,GO:0098869,GO:1901700,GO:1901701,GO:1990748
Evalue1.03e-123
EggNOG OGsCOG0685@1|root,2QR1E@2759|Eukaryota
EC1.11.1.5
Descriptioncytochrome-c peroxidase activity
COG categoryE
BiGG ReactioniMM904.YKR066C
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3795Gcaud3795Gracilaria caudata M_176_S67 malegeneNODE_71_length_56537_cov_4.318092 9944..11336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3795.t1Gcaud3795.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_71_length_56537_cov_4.318092 9944..11336 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3795.t1.start1Gcaud3795.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_71_length_56537_cov_4.318092 9944..9946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3795.t1.CDS1Gcaud3795.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_71_length_56537_cov_4.318092 9944..10410 +
Gcaud3795.t1.CDS2Gcaud3795.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_71_length_56537_cov_4.318092 10555..10573 +
Gcaud3795.t1.CDS3Gcaud3795.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_71_length_56537_cov_4.318092 10663..11023 +
Gcaud3795.t1.CDS4Gcaud3795.t1.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_71_length_56537_cov_4.318092 11131..11336 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3795.t1.exon1Gcaud3795.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_71_length_56537_cov_4.318092 9944..10410 +
Gcaud3795.t1.exon2Gcaud3795.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_71_length_56537_cov_4.318092 10555..10573 +
Gcaud3795.t1.exon3Gcaud3795.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_71_length_56537_cov_4.318092 10663..11023 +
Gcaud3795.t1.exon4Gcaud3795.t1.exon4Gracilaria caudata M_176_S67 maleexonNODE_71_length_56537_cov_4.318092 11131..11336 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3795.t1.intron1Gcaud3795.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_71_length_56537_cov_4.318092 10411..10554 +
Gcaud3795.t1.intron2Gcaud3795.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_71_length_56537_cov_4.318092 10574..10662 +
Gcaud3795.t1.intron3Gcaud3795.t1.intron3Gracilaria caudata M_176_S67 maleintronNODE_71_length_56537_cov_4.318092 11024..11130 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3795.t1.stop1Gcaud3795.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_71_length_56537_cov_4.318092 11334..11336 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3795.t1 ID=Gcaud3795.t1|Name=Gcaud3795.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=351bp
MATRLLVARLAARALSTAVTSTPASRISRVATSRTFEAATAATRTTTALT
CVAAVGLGASVAYAASPLDDAVSKEDIAAVAAAIHDMLDNDDEDLGPTLV
RLAWHASGTYDKESGSGGSEGATMRFKPESEHGANAGLHVARNALEPIKI
LFPNFTYSDLWTLAGAVAIEHMGGPKIVWRPGRRDAADGSECTPDGRLPD
ADKGKVGATIRHVREIFDRQGFDDREMVALIGAHALGRCHTDRSGYTGPW
TRAPTTFSNLYYKELLENIWTLKNWEGPDQFEDPTGDLMMLPSDMALLWD
KNFRKYVVEFADNEEEFFKAFASAFQKLEENGVKAFKGVGGTGKPWYKFW
*
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spliced messenger RNA

>Gcaud3795.t1 ID=Gcaud3795.t1|Name=Gcaud3795.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:9944..11336+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACACGTCTTCTTGTTGCCCGTCTAGCCGCGCGTGCGCTTTCTAC
AGCCGTAACTTCTACGCCTGCCTCAAGGATTTCTCGCGTGGCTACTTCGC
GGACCTTTGAGGCGGCTACGGCTGCCACACGCACTACCACTGCGCTCACG
TGCGTCGCAGCTGTCGGTTTGGGGGCGTCCGTTGCGTACGCTGCTTCGCC
GCTCGATGATGCGGTTAGCAAGGAGGATATTGCGGCTGTTGCTGCCGCCA
TTCATGATATGCTCGACAACGACGATGAGGATCTCGGGCCTACGCTTGTG
AGGCTTGCGTGGCATGCCAGTGGTACTTATGATAAGGAATCTGGCTCTGG
CGGTAGTGAGGGTGCCACAATGCGCTTTAAACCGGAGAGCGAACATGGAG
CCAACGCGGGGTTACATGTCGCCCGGAACGCTCTGGAGCCTATTAAGATT
CTCTTCCCAAACTTTACATACTCTGATCTGTGGACGTTAGCAGGAGCCGT
AGCTATTGAACACATGGGCGGGCCCAAGATTGTATGGAGACCTGGCAGAC
GCGATGCGGCAGATGGAAGTGAGTGTACTCCAGATGGTCGTTTGCCTGAC
GCCGACAAGGGAAAAGTCGGGGCAACAATTCGACATGTTCGTGAGATCTT
TGACCGACAAGGATTTGACGATCGTGAGATGGTGGCGCTTATTGGCGCTC
ACGCTCTGGGAAGATGTCATACTGATCGCAGCGGATATACTGGCCCCTGG
ACGCGTGCCCCAACTACTTTCTCGAACCTTTACTACAAGGAACTTTTGGA
AAACATTTGGACTCTGAAGAATTGGGAGGGCCCGGATCAGTTCGAGGATC
CTACTGGCGATTTGATGATGCTTCCTTCCGATATGGCACTACTTTGGGAC
AAAAACTTCAGGAAGTATGTGGTGGAGTTTGCTGACAATGAAGAGGAATT
CTTCAAGGCGTTTGCTTCTGCATTCCAAAAGCTGGAGGAAAATGGGGTGA
AGGCATTTAAGGGAGTGGGGGGCACAGGAAAGCCTTGGTACAAGTTTTGG
TAG
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protein sequence of Gcaud3795.t1

>Gcaud3795.t1 ID=Gcaud3795.t1|Name=Gcaud3795.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=351bp
MATRLLVARLAARALSTAVTSTPASRISRVATSRTFEAATAATRTTTALT
CVAAVGLGASVAYAASPLDDAVSKEDIAAVAAAIHDMLDNDDEDLGPTLV
RLAWHASGTYDKESGSGGSEGATMRFKPESEHGANAGLHVARNALEPIKI
LFPNFTYSDLWTLAGAVAIEHMGGPKIVWRPGRRDAADGSECTPDGRLPD
ADKGKVGATIRHVREIFDRQGFDDREMVALIGAHALGRCHTDRSGYTGPW
TRAPTTFSNLYYKELLENIWTLKNWEGPDQFEDPTGDLMMLPSDMALLWD
KNFRKYVVEFADNEEEFFKAFASAFQKLEENGVKAFKGVGGTGKPWYKFW
*
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mRNA from alignment at NODE_71_length_56537_cov_4.318092:9944..11336+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3795.t1 ID=Gcaud3795.t1|Name=Gcaud3795.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1393bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:9944..11336+ (Gracilaria caudata M_176_S67 male)
ATGGCCACACGTCTTCTTGTTGCCCGTCTAGCCGCGCGTGCGCTTTCTAC
AGCCGTAACTTCTACGCCTGCCTCAAGGATTTCTCGCGTGGCTACTTCGC
GGACCTTTGAGGCGGCTACGGCTGCCACACGCACTACCACTGCGCTCACG
TGCGTCGCAGCTGTCGGTTTGGGGGCGTCCGTTGCGTACGCTGCTTCGCC
GCTCGATGATGCGGTTAGCAAGGAGGATATTGCGGCTGTTGCTGCCGCCA
TTCATGATATGCTCGACAACGACGATGAGGATCTCGGGCCTACGCTTGTG
AGGCTTGCGTGGCATGCCAGTGGTACTTATGATAAGGAATCTGGCTCTGG
CGGTAGTGAGGGTGCCACAATGCGCTTTAAACCGGAGAGCGAACATGGAG
CCAACGCGGGGTTACATGTCGCCCGGAACGCTCTGGAGCCTATTAAGATT
CTCTTCCCAAACTTTACGTGAGTTGGCCGCTGATCGATTCACATTTTTAC
AGATCGTCGAGGCACAGTTAAGATACTGACATAAACGTGGTCTATCTCTT
ATGTCATAATGTTTATCTTTCTCAACTGCGGCTTCATCGGGAATCCAAAT
GATCTGAAAAGATACTCTGATCTGTGGACGGTACGTTTGCGTATGAAGAT
TCGTGCGAGCATGACAAGCGATTTGATCCATATCTGACAAGTGGTTTGGG
TGGAATTTGTTTTCTGTAGTTAGCAGGAGCCGTAGCTATTGAACACATGG
GCGGGCCCAAGATTGTATGGAGACCTGGCAGACGCGATGCGGCAGATGGA
AGTGAGTGTACTCCAGATGGTCGTTTGCCTGACGCCGACAAGGGAAAAGT
CGGGGCAACAATTCGACATGTTCGTGAGATCTTTGACCGACAAGGATTTG
ACGATCGTGAGATGGTGGCGCTTATTGGCGCTCACGCTCTGGGAAGATGT
CATACTGATCGCAGCGGATATACTGGCCCCTGGACGCGTGCCCCAACTAC
TTTCTCGAACCTTTACTACAAGGAACTTTTGGAAAACATTTGGACTCTGA
AGAATTGGGAGGGCCCGGATCAGTTCGAGGGTAAGTTTATCGAGTGGATG
TGTGGATTGTTGGTTTGGCGCGTTTGAATAGAGCGCGTTACTAATTACTT
TTCTTGATTTTGTGATGTCTGTCAAACCATGAAACAGATCCTACTGGCGA
TTTGATGATGCTTCCTTCCGATATGGCACTACTTTGGGACAAAAACTTCA
GGAAGTATGTGGTGGAGTTTGCTGACAATGAAGAGGAATTCTTCAAGGCG
TTTGCTTCTGCATTCCAAAAGCTGGAGGAAAATGGGGTGAAGGCATTTAA
GGGAGTGGGGGGCACAGGAAAGCCTTGGTACAAGTTTTGGTAG
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Coding sequence (CDS) from alignment at NODE_71_length_56537_cov_4.318092:9944..11336+

>Gcaud3795.t1 ID=Gcaud3795.t1|Name=Gcaud3795.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1053bp|location=Sequence derived from alignment at NODE_71_length_56537_cov_4.318092:9944..11336+ (Gracilaria caudata M_176_S67 male)
ATGGCCACACGTCTTCTTGTTGCCCGTCTAGCCGCGCGTGCGCTTTCTAC
AGCCGTAACTTCTACGCCTGCCTCAAGGATTTCTCGCGTGGCTACTTCGC
GGACCTTTGAGGCGGCTACGGCTGCCACACGCACTACCACTGCGCTCACG
TGCGTCGCAGCTGTCGGTTTGGGGGCGTCCGTTGCGTACGCTGCTTCGCC
GCTCGATGATGCGGTTAGCAAGGAGGATATTGCGGCTGTTGCTGCCGCCA
TTCATGATATGCTCGACAACGACGATGAGGATCTCGGGCCTACGCTTGTG
AGGCTTGCGTGGCATGCCAGTGGTACTTATGATAAGGAATCTGGCTCTGG
CGGTAGTGAGGGTGCCACAATGCGCTTTAAACCGGAGAGCGAACATGGAG
CCAACGCGGGGTTACATGTCGCCCGGAACGCTCTGGAGCCTATTAAGATT
CTCTTCCCAAACTTTACATACTCTGATCTGTGGACGTTAGCAGGAGCCGT
AGCTATTGAACACATGGGCGGGCCCAAGATTGTATGGAGACCTGGCAGAC
GCGATGCGGCAGATGGAAGTGAGTGTACTCCAGATGGTCGTTTGCCTGAC
GCCGACAAGGGAAAAGTCGGGGCAACAATTCGACATGTTCGTGAGATCTT
TGACCGACAAGGATTTGACGATCGTGAGATGGTGGCGCTTATTGGCGCTC
ACGCTCTGGGAAGATGTCATACTGATCGCAGCGGATATACTGGCCCCTGG
ACGCGTGCCCCAACTACTTTCTCGAACCTTTACTACAAGGAACTTTTGGA
AAACATTTGGACTCTGAAGAATTGGGAGGGCCCGGATCAGTTCGAGGATC
CTACTGGCGATTTGATGATGCTTCCTTCCGATATGGCACTACTTTGGGAC
AAAAACTTCAGGAAGTATGTGGTGGAGTTTGCTGACAATGAAGAGGAATT
CTTCAAGGCGTTTGCTTCTGCATTCCAAAAGCTGGAGGAAAATGGGGTGA
AGGCATTTAAGGGAGTGGGGGGCACAGGAAAGCCTTGGTACAAGTTTTGG
TAG
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