Gcaud379.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud379.t1
Unique NameGcaud379.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length22
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12541_length_441_cov_3.400000contigNODE_12541_length_441_cov_3.400000:226..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud379Gcaud379Gracilaria caudata M_176_S67 malegeneNODE_12541_length_441_cov_3.400000 226..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud379.t1Gcaud379.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_12541_length_441_cov_3.400000 226..389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud379.t1.CDS1Gcaud379.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_12541_length_441_cov_3.400000 226..257 -
Gcaud379.t1.CDS2Gcaud379.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_12541_length_441_cov_3.400000 357..389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud379.t1.exon1Gcaud379.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_12541_length_441_cov_3.400000 226..257 -
Gcaud379.t1.exon2Gcaud379.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_12541_length_441_cov_3.400000 357..389 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud379.t1.intron1Gcaud379.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_12541_length_441_cov_3.400000 258..356 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud379.t1.start1Gcaud379.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_12541_length_441_cov_3.400000 387..389 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud379.t1 ID=Gcaud379.t1|Name=Gcaud379.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=22bp
LRQILQALPNKDDADRKQLLLR
back to top

spliced messenger RNA

>Gcaud379.t1 ID=Gcaud379.t1|Name=Gcaud379.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=65bp|location=Sequence derived from alignment at NODE_12541_length_441_cov_3.400000:226..389- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGACAGATTCTACAAGCGCTTCCCAACAAGGATGACGCTGATAGAAA
GCAGCTTCTGCTTCG
back to top

protein sequence of Gcaud379.t1

>Gcaud379.t1 ID=Gcaud379.t1|Name=Gcaud379.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=22bp
LRQILQALPNKDDADRKQLLLR
back to top

mRNA from alignment at NODE_12541_length_441_cov_3.400000:226..389-

Legend: polypeptideCDSexonstart_codonintron
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud379.t1 ID=Gcaud379.t1|Name=Gcaud379.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=164bp|location=Sequence derived from alignment at NODE_12541_length_441_cov_3.400000:226..389- (Gracilaria caudata M_176_S67 male)
CTGCGACAGATTCTACAAGCGCTTCCCAACAAGGTACGCCAGCTTTTCTC
CCCTCGCACTTTGACATCATTTTACACATACCTGCCATGCTAACTCCAAT
CGTTCCGCGCCACTTTACACTCCAACTATCAGGATGACGCTGATAGAAAG
CAGCTTCTGCTTCG
back to top

Coding sequence (CDS) from alignment at NODE_12541_length_441_cov_3.400000:226..389-

>Gcaud379.t1 ID=Gcaud379.t1|Name=Gcaud379.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=65bp|location=Sequence derived from alignment at NODE_12541_length_441_cov_3.400000:226..389- (Gracilaria caudata M_176_S67 male)
CTGCGACAGATTCTACAAGCGCTTCCCAACAAGGATGACGCTGATAGAAA
GCAGCTTCTGCTTCG
back to top