Gcaud3787.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3787.t1
Unique Name	Gcaud3787.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	622

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_55_length_62747_cov_4.797082	contig	NODE_55_length_62747_cov_4.797082:13775..16405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3787	Gcaud3787	Gracilaria caudata M_176_S67 male	gene	NODE_55_length_62747_cov_4.797082 13775..16405 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3787.t1	Gcaud3787.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_55_length_62747_cov_4.797082 13775..16405 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3787.t1.start1	Gcaud3787.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_55_length_62747_cov_4.797082 13775..13777 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3787.t1.CDS1	Gcaud3787.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_55_length_62747_cov_4.797082 13775..14193 +
Gcaud3787.t1.CDS2	Gcaud3787.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_55_length_62747_cov_4.797082 14317..15181 +
Gcaud3787.t1.CDS3	Gcaud3787.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_55_length_62747_cov_4.797082 15824..16405 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3787.t1.exon1	Gcaud3787.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_55_length_62747_cov_4.797082 13775..14193 +
Gcaud3787.t1.exon2	Gcaud3787.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_55_length_62747_cov_4.797082 14317..15181 +
Gcaud3787.t1.exon3	Gcaud3787.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_55_length_62747_cov_4.797082 15824..16405 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3787.t1.intron1	Gcaud3787.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_55_length_62747_cov_4.797082 14194..14316 +
Gcaud3787.t1.intron2	Gcaud3787.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_55_length_62747_cov_4.797082 15182..15823 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3787.t1.stop1	Gcaud3787.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_55_length_62747_cov_4.797082 16403..16405 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+
coding sequence from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+

mRNA sequence

>Gcaud3787.t1 ID=Gcaud3787.t1|Name=Gcaud3787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=622bp
MEALNAMILRFGGLHSLKPFGLQKNEYEYRVFSEPCNCNMMKKAIESPSS
AYPLLFFSLFCDGTVLSRSEAVEIVVLRIRHDNVPEAQGHWHDVGIAPEL
LIDEYKGKNKDTPLLRSELFQRFLFLPVQGASACLKESWGVNAVKTSEGR
TVSHLVAAQIECAIVDRLLCDGTFIDRMGSIFPSHKWRLFLNMPLQHKRS
HHAYLKHFLKQESARTFPPSLVVLNGIGTDNERFYDVFGFHKLHGFSLGV
GRYFGDNLFRVLRGSIVRARLSREAWITIANRWIAELLPNSGVHGMTPFK
LNPSDKHASFTGRQRRLLIPFQFHVVIGLNDFSDPDNDIITQTALALEFV
QALLEGLNQYGMIDGMTEVEIERLEDFNETVCTLMKKMFRLRLSKKLHRF
EAHLGASLRNFGMVSFTDTGSNESLHQGKDSGLDWTGHAHSNENVLHKVS
KTNLLRTNGGTARLTLLLTANIAAIIEWDTSSTYVCQALYPGRFSDWNGF
RFDVVSYATQPSNILSLHTAHCFDGVGECVGFTRRERQGSFRQPDVAILR
KSTQAEPRTGNVRIVKKFGFERLRFKFDPNSEDAVLYCVSMLCIGRRLNF
VRDIFDVISRRGFPKSTLVSY*

spliced messenger RNA

>Gcaud3787.t1 ID=Gcaud3787.t1|Name=Gcaud3787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1866bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCTCTTAATGCAATGATTCTTCGCTTTGGCGGCCTACATTCGCT
AAAGCCGTTCGGTTTGCAGAAGAATGAGTATGAATATCGCGTGTTCTCGG
AACCATGTAACTGCAACATGATGAAGAAAGCCATCGAATCACCCAGCAGC
GCTTATCCGTTATTATTTTTCTCATTGTTCTGCGACGGAACTGTCCTATC
GCGATCTGAAGCTGTTGAAATCGTTGTGTTACGAATTCGACATGACAACG
TACCTGAGGCTCAAGGGCACTGGCATGATGTTGGAATTGCGCCTGAACTT
TTAATTGACGAGTACAAAGGAAAAAATAAGGACACCCCTTTGCTTCGAAG
TGAGCTATTCCAGAGATTTCTCTTTCTTCCCGTGCAGGGAGCATCTGCCT
GCTTGAAAGAATCCTGGGGTGTCAACGCAGTTAAAACATCGGAGGGACGA
ACTGTTAGTCATCTTGTGGCGGCCCAAATTGAATGTGCTATTGTTGACCG
CCTGCTGTGTGATGGGACGTTTATTGATAGAATGGGATCAATATTCCCCT
CACACAAATGGCGTTTGTTTCTGAACATGCCTCTGCAGCACAAACGAAGT
CATCACGCGTACTTAAAGCATTTTTTGAAGCAAGAAAGCGCTAGAACTTT
TCCACCGTCATTGGTGGTTCTCAATGGAATTGGTACCGACAATGAAAGGT
TTTACGATGTGTTTGGTTTCCACAAACTGCATGGGTTTAGTCTGGGAGTT
GGTCGCTACTTTGGTGACAACCTGTTCAGAGTCCTACGAGGCTCGATTGT
AAGAGCTCGTCTCTCCCGCGAAGCATGGATCACAATTGCTAACAGATGGA
TCGCAGAACTTCTGCCGAACAGTGGAGTGCACGGAATGACCCCTTTTAAG
TTAAATCCTTCCGACAAGCATGCGAGTTTCACTGGCAGGCAACGAAGGTT
GCTGATACCCTTCCAATTTCATGTAGTCATTGGTCTTAATGACTTCTCTG
ATCCTGACAATGACATCATCACACAGACGGCTCTAGCGCTGGAATTTGTT
CAGGCATTGTTAGAAGGCTTGAATCAGTATGGAATGATTGATGGTATGAC
AGAAGTTGAAATAGAACGATTAGAAGATTTCAACGAAACCGTTTGTACAT
TGATGAAGAAAATGTTTCGTCTTCGCTTAAGCAAAAAGCTCCACAGATTT
GAAGCCCATCTTGGTGCTTCATTGCGAAACTTTGGAATGGTTAGCTTCAC
TGACACAGGATCGAATGAAAGTCTTCATCAAGGGAAGGATTCAGGATTAG
ATTGGACAGGACATGCTCATTCCAACGAGAATGTGCTGCATAAGGTTTCG
AAAACGAATCTGTTGAGGACAAACGGCGGAACAGCTCGTTTGACTCTTCT
ATTGACTGCAAATATTGCTGCGATCATTGAGTGGGACACAAGCAGTACAT
ACGTGTGTCAAGCATTGTATCCTGGCCGTTTCAGTGATTGGAATGGCTTT
AGATTTGACGTAGTTTCATATGCGACTCAGCCGAGTAACATTCTTTCCCT
GCATACAGCACACTGCTTTGATGGAGTTGGTGAATGTGTTGGGTTTACTC
GTCGAGAAAGGCAAGGGTCGTTCCGGCAACCGGACGTGGCTATACTAAGA
AAATCAACTCAGGCAGAACCGCGAACTGGCAATGTTCGCATTGTTAAAAA
GTTCGGTTTTGAACGACTACGATTTAAGTTTGATCCAAATTCGGAAGATG
CTGTTCTTTATTGCGTTTCTATGTTATGCATTGGAAGGAGACTTAACTTT
GTTCGGGATATTTTTGACGTCATTTCTCGACGAGGGTTTCCAAAGTCTAC
TCTTGTTTCATATTAA

protein sequence of Gcaud3787.t1

>Gcaud3787.t1 ID=Gcaud3787.t1|Name=Gcaud3787.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=622bp
MEALNAMILRFGGLHSLKPFGLQKNEYEYRVFSEPCNCNMMKKAIESPSS
AYPLLFFSLFCDGTVLSRSEAVEIVVLRIRHDNVPEAQGHWHDVGIAPEL
LIDEYKGKNKDTPLLRSELFQRFLFLPVQGASACLKESWGVNAVKTSEGR
TVSHLVAAQIECAIVDRLLCDGTFIDRMGSIFPSHKWRLFLNMPLQHKRS
HHAYLKHFLKQESARTFPPSLVVLNGIGTDNERFYDVFGFHKLHGFSLGV
GRYFGDNLFRVLRGSIVRARLSREAWITIANRWIAELLPNSGVHGMTPFK
LNPSDKHASFTGRQRRLLIPFQFHVVIGLNDFSDPDNDIITQTALALEFV
QALLEGLNQYGMIDGMTEVEIERLEDFNETVCTLMKKMFRLRLSKKLHRF
EAHLGASLRNFGMVSFTDTGSNESLHQGKDSGLDWTGHAHSNENVLHKVS
KTNLLRTNGGTARLTLLLTANIAAIIEWDTSSTYVCQALYPGRFSDWNGF
RFDVVSYATQPSNILSLHTAHCFDGVGECVGFTRRERQGSFRQPDVAILR
KSTQAEPRTGNVRIVKKFGFERLRFKFDPNSEDAVLYCVSMLCIGRRLNF
VRDIFDVISRRGFPKSTLVSY*

mRNA from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3787.t1 ID=Gcaud3787.t1|Name=Gcaud3787.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2631bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCTCTTAATGCAATGATTCTTCGCTTTGGCGGCCTACATTCGCT
AAAGCCGTTCGGTTTGCAGAAGAATGAGTATGAATATCGCGTGTTCTCGG
AACCATGTAACTGCAACATGATGAAGAAAGCCATCGAATCACCCAGCAGC
GCTTATCCGTTATTATTTTTCTCATTGTTCTGCGACGGAACTGTCCTATC
GCGATCTGAAGCTGTTGAAATCGTTGTGTTACGAATTCGACATGACAACG
TACCTGAGGCTCAAGGGCACTGGCATGATGTTGGAATTGCGCCTGAACTT
TTAATTGACGAGTACAAAGGAAAAAATAAGGACACCCCTTTGCTTCGAAG
TGAGCTATTCCAGAGATTTCTCTTTCTTCCCGTGCAGGGAGCATCTGCCT
GCTTGAAAGAATCCTGGGGGTAATATGGGTTTGAACCACGACTGCTTAGC
ATATTATGCGATCAACCTCAAGAGGCTGCGTTCACCGCTCTATGCAGAAG
CAGAGGCAAACGACCATGCACAATGTGTCAGGTTACGAGTAGTGTCAACG
CAGTTAAAACATCGGAGGGACGAACTGTTAGTCATCTTGTGGCGGCCCAA
ATTGAATGTGCTATTGTTGACCGCCTGCTGTGTGATGGGACGTTTATTGA
TAGAATGGGATCAATATTCCCCTCACACAAATGGCGTTTGTTTCTGAACA
TGCCTCTGCAGCACAAACGAAGTCATCACGCGTACTTAAAGCATTTTTTG
AAGCAAGAAAGCGCTAGAACTTTTCCACCGTCATTGGTGGTTCTCAATGG
AATTGGTACCGACAATGAAAGGTTTTACGATGTGTTTGGTTTCCACAAAC
TGCATGGGTTTAGTCTGGGAGTTGGTCGCTACTTTGGTGACAACCTGTTC
AGAGTCCTACGAGGCTCGATTGTAAGAGCTCGTCTCTCCCGCGAAGCATG
GATCACAATTGCTAACAGATGGATCGCAGAACTTCTGCCGAACAGTGGAG
TGCACGGAATGACCCCTTTTAAGTTAAATCCTTCCGACAAGCATGCGAGT
TTCACTGGCAGGCAACGAAGGTTGCTGATACCCTTCCAATTTCATGTAGT
CATTGGTCTTAATGACTTCTCTGATCCTGACAATGACATCATCACACAGA
CGGCTCTAGCGCTGGAATTTGTTCAGGCATTGTTAGAAGGCTTGAATCAG
TATGGAATGATTGATGGTATGACAGAAGTTGAAATAGAACGATTAGAAGA
TTTCAACGAAACCGTTTGTACATTGATGAAGAAAATGTTTCGTCTTCGCT
TAAGCAAAAAGCTCCACAGATTTGAAGCCCATCTTGGTGCTTCATTGCGA
AACTTTGGAATGGTTAGCTTCACTGACACAGGATCGAATGAAAGTCTTCA
TCAAGGGGTAAAAAGCAGTTTCCATACTACCGATAAGCGCAAACGCGAGC
TTGGGAGACAAATTCTCAATGTCAATGTCGCCGCTGAAACTTTCGAAGTA
CTATGTGCCCAAAATGTCGTCAATGAAGGGCAAAAAGACCATCAACAGAA
AACCAcccaactaaatatttgcgcggtgtatgtacgcactatgtctgata
tgggggttcaaatgtttgatgtatgcctggtttggcacattatcgtatct
atgtcgtttacatgtcgcgtttacatcgcatgcattcctaatgcgtgact
gatgttggtcgatgtaacggcagaatagaaaaaaatttttgagactggca
ctctgtctgttatgtgcatgtcgtgtgtccagaacgtacatacattccac
atatataggatattcacactacatagatagaacatagatacggcatgtat
cggaatcatgccaagatcaggcacatgacagaaaagtgaaccccaagctc
agacaaagaccatacatacaccgcgcaaatgttcccctgTGCCCAAGAAT
ACTGAGCACTGCAGAACTGGAACTGAAGCGACGTCCGCAAACGATGTACT
GTAGAAGTGAACTTGATCTGCAGCTCTCAATTTCACAATCACTCAATAGA
AGGATTCAGGATTAGATTGGACAGGACATGCTCATTCCAACGAGAATGTG
CTGCATAAGGTTTCGAAAACGAATCTGTTGAGGACAAACGGCGGAACAGC
TCGTTTGACTCTTCTATTGACTGCAAATATTGCTGCGATCATTGAGTGGG
ACACAAGCAGTACATACGTGTGTCAAGCATTGTATCCTGGCCGTTTCAGT
GATTGGAATGGCTTTAGATTTGACGTAGTTTCATATGCGACTCAGCCGAG
TAACATTCTTTCCCTGCATACAGCACACTGCTTTGATGGAGTTGGTGAAT
GTGTTGGGTTTACTCGTCGAGAAAGGCAAGGGTCGTTCCGGCAACCGGAC
GTGGCTATACTAAGAAAATCAACTCAGGCAGAACCGCGAACTGGCAATGT
TCGCATTGTTAAAAAGTTCGGTTTTGAACGACTACGATTTAAGTTTGATC
CAAATTCGGAAGATGCTGTTCTTTATTGCGTTTCTATGTTATGCATTGGA
AGGAGACTTAACTTTGTTCGGGATATTTTTGACGTCATTTCTCGACGAGG
GTTTCCAAAGTCTACTCTTGTTTCATATTAA

Coding sequence (CDS) from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+

>Gcaud3787.t1 ID=Gcaud3787.t1|Name=Gcaud3787.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1866bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:13775..16405+ (Gracilaria caudata M_176_S67 male)
ATGGAAGCTCTTAATGCAATGATTCTTCGCTTTGGCGGCCTACATTCGCT
AAAGCCGTTCGGTTTGCAGAAGAATGAGTATGAATATCGCGTGTTCTCGG
AACCATGTAACTGCAACATGATGAAGAAAGCCATCGAATCACCCAGCAGC
GCTTATCCGTTATTATTTTTCTCATTGTTCTGCGACGGAACTGTCCTATC
GCGATCTGAAGCTGTTGAAATCGTTGTGTTACGAATTCGACATGACAACG
TACCTGAGGCTCAAGGGCACTGGCATGATGTTGGAATTGCGCCTGAACTT
TTAATTGACGAGTACAAAGGAAAAAATAAGGACACCCCTTTGCTTCGAAG
TGAGCTATTCCAGAGATTTCTCTTTCTTCCCGTGCAGGGAGCATCTGCCT
GCTTGAAAGAATCCTGGGGTGTCAACGCAGTTAAAACATCGGAGGGACGA
ACTGTTAGTCATCTTGTGGCGGCCCAAATTGAATGTGCTATTGTTGACCG
CCTGCTGTGTGATGGGACGTTTATTGATAGAATGGGATCAATATTCCCCT
CACACAAATGGCGTTTGTTTCTGAACATGCCTCTGCAGCACAAACGAAGT
CATCACGCGTACTTAAAGCATTTTTTGAAGCAAGAAAGCGCTAGAACTTT
TCCACCGTCATTGGTGGTTCTCAATGGAATTGGTACCGACAATGAAAGGT
TTTACGATGTGTTTGGTTTCCACAAACTGCATGGGTTTAGTCTGGGAGTT
GGTCGCTACTTTGGTGACAACCTGTTCAGAGTCCTACGAGGCTCGATTGT
AAGAGCTCGTCTCTCCCGCGAAGCATGGATCACAATTGCTAACAGATGGA
TCGCAGAACTTCTGCCGAACAGTGGAGTGCACGGAATGACCCCTTTTAAG
TTAAATCCTTCCGACAAGCATGCGAGTTTCACTGGCAGGCAACGAAGGTT
GCTGATACCCTTCCAATTTCATGTAGTCATTGGTCTTAATGACTTCTCTG
ATCCTGACAATGACATCATCACACAGACGGCTCTAGCGCTGGAATTTGTT
CAGGCATTGTTAGAAGGCTTGAATCAGTATGGAATGATTGATGGTATGAC
AGAAGTTGAAATAGAACGATTAGAAGATTTCAACGAAACCGTTTGTACAT
TGATGAAGAAAATGTTTCGTCTTCGCTTAAGCAAAAAGCTCCACAGATTT
GAAGCCCATCTTGGTGCTTCATTGCGAAACTTTGGAATGGTTAGCTTCAC
TGACACAGGATCGAATGAAAGTCTTCATCAAGGGAAGGATTCAGGATTAG
ATTGGACAGGACATGCTCATTCCAACGAGAATGTGCTGCATAAGGTTTCG
AAAACGAATCTGTTGAGGACAAACGGCGGAACAGCTCGTTTGACTCTTCT
ATTGACTGCAAATATTGCTGCGATCATTGAGTGGGACACAAGCAGTACAT
ACGTGTGTCAAGCATTGTATCCTGGCCGTTTCAGTGATTGGAATGGCTTT
AGATTTGACGTAGTTTCATATGCGACTCAGCCGAGTAACATTCTTTCCCT
GCATACAGCACACTGCTTTGATGGAGTTGGTGAATGTGTTGGGTTTACTC
GTCGAGAAAGGCAAGGGTCGTTCCGGCAACCGGACGTGGCTATACTAAGA
AAATCAACTCAGGCAGAACCGCGAACTGGCAATGTTCGCATTGTTAAAAA
GTTCGGTTTTGAACGACTACGATTTAAGTTTGATCCAAATTCGGAAGATG
CTGTTCTTTATTGCGTTTCTATGTTATGCATTGGAAGGAGACTTAACTTT
GTTCGGGATATTTTTGACGTCATTTCTCGACGAGGGTTTCCAAAGTCTAC
TCTTGTTTCATATTAA