Gcaud3785.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3785.t1
Unique Name	Gcaud3785.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	527

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_55_length_62747_cov_4.797082	contig	NODE_55_length_62747_cov_4.797082:10686..12334 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3785	Gcaud3785	Gracilaria caudata M_176_S67 male	gene	NODE_55_length_62747_cov_4.797082 10686..12334 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3785.t1	Gcaud3785.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_55_length_62747_cov_4.797082 10686..12334 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3785.t1.stop1	Gcaud3785.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_55_length_62747_cov_4.797082 10686..10688 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3785.t1.CDS1	Gcaud3785.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_55_length_62747_cov_4.797082 10686..11140 -
Gcaud3785.t1.CDS2	Gcaud3785.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_55_length_62747_cov_4.797082 11209..12334 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3785.t1.exon1	Gcaud3785.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_55_length_62747_cov_4.797082 10686..11140 -
Gcaud3785.t1.exon2	Gcaud3785.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_55_length_62747_cov_4.797082 11209..12334 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3785.t1.intron1	Gcaud3785.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_55_length_62747_cov_4.797082 11141..11208 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3785.t1.start1	Gcaud3785.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_55_length_62747_cov_4.797082 12332..12334 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_55_length_62747_cov_4.797082:10686..12334-
coding sequence from alignment at NODE_55_length_62747_cov_4.797082:10686..12334-

mRNA sequence

>Gcaud3785.t1 ID=Gcaud3785.t1|Name=Gcaud3785.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=527bp
MYAPQTKGNVPGFNSCHRGTKRAISDRQLGVPSTITMPYRYNTSATTNYQ
GASLPSLPRNLSTSEPCVHALPEYTGHGTGHVRYSAESEEGARIRRRIST
LTNLQSQNASQPGQPGLAMRPTPSSSSVSPLRHQTSPNIILPAAELPQTN
IRSPFAHSSQHPRATEPPSRLKISARPSVSSGQGQSKASRPHVQPPAQLS
SPLVTSARLPVSRGQGQSQPSRSHVQPAAQLSSLLATSARPPVCRGPGQS
QALRSGVQPRQNAQRKTANATQPTTANAKKSATELSNENLVALTMQKEKQ
INLLEETVAIMKQVRKDNNTLILILERIERNSLESLENWQRRASSTGVLH
AHEEFLTLAKGICNVERFLKASSALAALQVGREHSKCRGLDPVEVIDKFY
VLTGGSIFHCIGLEHSIAAAQKEGNVKLEVSHIRARLRKTTALFDDDVNK
RMYTALFSNAPELHTFLTSRSFESKQELQNIYCLSVLRHIEERAIPTRKN
VLYEGNLFQQAIATAESVFLDLAGRQ*

spliced messenger RNA

>Gcaud3785.t1 ID=Gcaud3785.t1|Name=Gcaud3785.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:10686..12334- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATGCTCCGCAGACAAAAGGAAATGTTCCTGGTTTCAATAGTTGCCA
TAGGGGAACAAAACGTGCGATAAGTGATAGGCAGTTGGGGGTACCAAGCA
CTATTACCATGCCATACAGATACAATACCAGCGCTACCACTAACTACCAG
GGTGCGAGCCTGCCGTCCCTGCCTCGAAACCTTTCTACTTCCGAGCCATG
CGTTCACGCGTTGCCGGAGTACACGGGTCACGGTACAGGTCATGTGCGGT
ACTCTGCTGAATCAGAAGAAGGCGCCCGAATTCGCCGAAGGATAAGCACC
TTAACTAATTTGCAGTCACAAAATGCATCTCAGCCAGGTCAACCGGGGCT
TGCGATGCGACCAACCCCATCGTCGAGCTCTGTTTCTCCATTGAGGCACC
AAACAAGCCCCAATATCATTCTGCCTGCAGCAGAGCTTCCACAGACCAAC
ATTCGATCTCCATTTGCACACTCCAGTCAACATCCACGTGCAACTGAACC
TCCGTCACGACTAAAAATTTCTGCCCGTCCTTCTGTGAGCAGCGGCCAAG
GACAGTCTAAGGCTTCACGTCCACACGTGCAACCACCGGCTCAACTATCG
TCACCGCTGGTGACTTCTGCTCGTCTTCCTGTGAGCAGAGGCCAAGGACA
GTCTCAGCCATCACGTTCACACGTGCAACCAGCAGCTCAACTATCGTCAC
TGCTGGCGACTTCTGCACGTCCTCCTGTGTGCAGGGGTCCAGGACAGTCT
CAGGCATTACGTTCAGGCGTGCAGCCTCGCCAGAACGCACAGCGAAAGAC
GGCAAACGCGACGCAGCCCACCACTGCCAATGCCAAGAAATCTGCAACAG
AGCTAAGTAATGAAAACTTGGTGGCCCTCACTATGCAGAAAGAAAAACAA
ATCAATCTGTTGGAGGAAACTGTGGCCATTATGAAGCAAGTGAGAAAAGA
CAACAATACTTTGATCCTTATTCTTGAACGAATTGAGCGCAACTCATTAG
AATCGCTTGAGAACTGGCAAAGGCGGGCTTCAAGCACTGGTGTGCTGCAT
GCACATGAAGAGTTTCTAACTCTTGCGAAGGGAATATGCAACGTCGAAAG
ATTCCTGAAGGCCTCATCTGCATTGGCGGCTCTCCAAGTGGGCAGAGAAC
ATAGCAAGTGTCGCGGCTTGGATCCTGTCGAAGTCATAGACAAGTTCTAC
GTGTTGACTGGTGGGTCAATATTTCACTGCATTGGATTGGAACATAGCAT
TGCAGCGGCACAGAAAGAGGGTAACGTAAAGCTGGAGGTGTCTCACATTC
GGGCTCGACTTCGTAAGACTACTGCGTTGTTTGATGACGACGTAAACAAG
CGCATGTACACTGCTTTATTTTCAAACGCTCCTGAACTACACACGTTTTT
GACCAGTCGTTCCTTTGAAAGCAAACAAGAGCTGCAAAACATATACTGCC
TTTCCGTTCTGAGGCATATAGAGGAGAGAGCGATACCAACACGAAAGAAT
GTTCTGTATGAAGGTAATCTTTTCCAGCAAGCAATCGCCACTGCGGAGAG
CGTGTTTCTCGATCTCGCAGGCCGACAGTAG

protein sequence of Gcaud3785.t1

>Gcaud3785.t1 ID=Gcaud3785.t1|Name=Gcaud3785.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=527bp
MYAPQTKGNVPGFNSCHRGTKRAISDRQLGVPSTITMPYRYNTSATTNYQ
GASLPSLPRNLSTSEPCVHALPEYTGHGTGHVRYSAESEEGARIRRRIST
LTNLQSQNASQPGQPGLAMRPTPSSSSVSPLRHQTSPNIILPAAELPQTN
IRSPFAHSSQHPRATEPPSRLKISARPSVSSGQGQSKASRPHVQPPAQLS
SPLVTSARLPVSRGQGQSQPSRSHVQPAAQLSSLLATSARPPVCRGPGQS
QALRSGVQPRQNAQRKTANATQPTTANAKKSATELSNENLVALTMQKEKQ
INLLEETVAIMKQVRKDNNTLILILERIERNSLESLENWQRRASSTGVLH
AHEEFLTLAKGICNVERFLKASSALAALQVGREHSKCRGLDPVEVIDKFY
VLTGGSIFHCIGLEHSIAAAQKEGNVKLEVSHIRARLRKTTALFDDDVNK
RMYTALFSNAPELHTFLTSRSFESKQELQNIYCLSVLRHIEERAIPTRKN
VLYEGNLFQQAIATAESVFLDLAGRQ*

mRNA from alignment at NODE_55_length_62747_cov_4.797082:10686..12334-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3785.t1 ID=Gcaud3785.t1|Name=Gcaud3785.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1649bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:10686..12334- (Gracilaria caudata M_176_S67 male)
ATGTATGCTCCGCAGACAAAAGGAAATGTTCCTGGTTTCAATAGTTGCCA
TAGGGGAACAAAACGTGCGATAAGTGATAGGCAGTTGGGGGTACCAAGCA
CTATTACCATGCCATACAGATACAATACCAGCGCTACCACTAACTACCAG
GGTGCGAGCCTGCCGTCCCTGCCTCGAAACCTTTCTACTTCCGAGCCATG
CGTTCACGCGTTGCCGGAGTACACGGGTCACGGTACAGGTCATGTGCGGT
ACTCTGCTGAATCAGAAGAAGGCGCCCGAATTCGCCGAAGGATAAGCACC
TTAACTAATTTGCAGTCACAAAATGCATCTCAGCCAGGTCAACCGGGGCT
TGCGATGCGACCAACCCCATCGTCGAGCTCTGTTTCTCCATTGAGGCACC
AAACAAGCCCCAATATCATTCTGCCTGCAGCAGAGCTTCCACAGACCAAC
ATTCGATCTCCATTTGCACACTCCAGTCAACATCCACGTGCAACTGAACC
TCCGTCACGACTAAAAATTTCTGCCCGTCCTTCTGTGAGCAGCGGCCAAG
GACAGTCTAAGGCTTCACGTCCACACGTGCAACCACCGGCTCAACTATCG
TCACCGCTGGTGACTTCTGCTCGTCTTCCTGTGAGCAGAGGCCAAGGACA
GTCTCAGCCATCACGTTCACACGTGCAACCAGCAGCTCAACTATCGTCAC
TGCTGGCGACTTCTGCACGTCCTCCTGTGTGCAGGGGTCCAGGACAGTCT
CAGGCATTACGTTCAGGCGTGCAGCCTCGCCAGAACGCACAGCGAAAGAC
GGCAAACGCGACGCAGCCCACCACTGCCAATGCCAAGAAATCTGCAACAG
AGCTAAGTAATGAAAACTTGGTGGCCCTCACTATGCAGAAAGAAAAACAA
ATCAATCTGTTGGAGGAAACTGTGGCCATTATGAAGCAAGTGAGAAAAGA
CAACAATACTTTGATCCTTATTCTTGAACGAATTGAGCGCAACTCATTAG
AATCGCTTGAGAACTGGCAAAGGCGGGCTTCAAGCACTGGTGTGCTGCAT
GCACATGAAGAGTTTCTAACTCTTGCGAAGGGAATATGCAACGTCGAAAG
ATTCCTGAAGGCCTCATCTGCATTGGGTATATTTCATATTCCTTTCATGT
ACCCAAGTCTGACACTGGAATTTATGTGTGTGATTTGATCAAAGCGGCTC
TCCAAGTGGGCAGAGAACATAGCAAGTGTCGCGGCTTGGATCCTGTCGAA
GTCATAGACAAGTTCTACGTGTTGACTGGTGGGTCAATATTTCACTGCAT
TGGATTGGAACATAGCATTGCAGCGGCACAGAAAGAGGGTAACGTAAAGC
TGGAGGTGTCTCACATTCGGGCTCGACTTCGTAAGACTACTGCGTTGTTT
GATGACGACGTAAACAAGCGCATGTACACTGCTTTATTTTCAAACGCTCC
TGAACTACACACGTTTTTGACCAGTCGTTCCTTTGAAAGCAAACAAGAGC
TGCAAAACATATACTGCCTTTCCGTTCTGAGGCATATAGAGGAGAGAGCG
ATACCAACACGAAAGAATGTTCTGTATGAAGGTAATCTTTTCCAGCAAGC
AATCGCCACTGCGGAGAGCGTGTTTCTCGATCTCGCAGGCCGACAGTAG

Coding sequence (CDS) from alignment at NODE_55_length_62747_cov_4.797082:10686..12334-

>Gcaud3785.t1 ID=Gcaud3785.t1|Name=Gcaud3785.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1581bp|location=Sequence derived from alignment at NODE_55_length_62747_cov_4.797082:10686..12334- (Gracilaria caudata M_176_S67 male)
ATGTATGCTCCGCAGACAAAAGGAAATGTTCCTGGTTTCAATAGTTGCCA
TAGGGGAACAAAACGTGCGATAAGTGATAGGCAGTTGGGGGTACCAAGCA
CTATTACCATGCCATACAGATACAATACCAGCGCTACCACTAACTACCAG
GGTGCGAGCCTGCCGTCCCTGCCTCGAAACCTTTCTACTTCCGAGCCATG
CGTTCACGCGTTGCCGGAGTACACGGGTCACGGTACAGGTCATGTGCGGT
ACTCTGCTGAATCAGAAGAAGGCGCCCGAATTCGCCGAAGGATAAGCACC
TTAACTAATTTGCAGTCACAAAATGCATCTCAGCCAGGTCAACCGGGGCT
TGCGATGCGACCAACCCCATCGTCGAGCTCTGTTTCTCCATTGAGGCACC
AAACAAGCCCCAATATCATTCTGCCTGCAGCAGAGCTTCCACAGACCAAC
ATTCGATCTCCATTTGCACACTCCAGTCAACATCCACGTGCAACTGAACC
TCCGTCACGACTAAAAATTTCTGCCCGTCCTTCTGTGAGCAGCGGCCAAG
GACAGTCTAAGGCTTCACGTCCACACGTGCAACCACCGGCTCAACTATCG
TCACCGCTGGTGACTTCTGCTCGTCTTCCTGTGAGCAGAGGCCAAGGACA
GTCTCAGCCATCACGTTCACACGTGCAACCAGCAGCTCAACTATCGTCAC
TGCTGGCGACTTCTGCACGTCCTCCTGTGTGCAGGGGTCCAGGACAGTCT
CAGGCATTACGTTCAGGCGTGCAGCCTCGCCAGAACGCACAGCGAAAGAC
GGCAAACGCGACGCAGCCCACCACTGCCAATGCCAAGAAATCTGCAACAG
AGCTAAGTAATGAAAACTTGGTGGCCCTCACTATGCAGAAAGAAAAACAA
ATCAATCTGTTGGAGGAAACTGTGGCCATTATGAAGCAAGTGAGAAAAGA
CAACAATACTTTGATCCTTATTCTTGAACGAATTGAGCGCAACTCATTAG
AATCGCTTGAGAACTGGCAAAGGCGGGCTTCAAGCACTGGTGTGCTGCAT
GCACATGAAGAGTTTCTAACTCTTGCGAAGGGAATATGCAACGTCGAAAG
ATTCCTGAAGGCCTCATCTGCATTGGCGGCTCTCCAAGTGGGCAGAGAAC
ATAGCAAGTGTCGCGGCTTGGATCCTGTCGAAGTCATAGACAAGTTCTAC
GTGTTGACTGGTGGGTCAATATTTCACTGCATTGGATTGGAACATAGCAT
TGCAGCGGCACAGAAAGAGGGTAACGTAAAGCTGGAGGTGTCTCACATTC
GGGCTCGACTTCGTAAGACTACTGCGTTGTTTGATGACGACGTAAACAAG
CGCATGTACACTGCTTTATTTTCAAACGCTCCTGAACTACACACGTTTTT
GACCAGTCGTTCCTTTGAAAGCAAACAAGAGCTGCAAAACATATACTGCC
TTTCCGTTCTGAGGCATATAGAGGAGAGAGCGATACCAACACGAAAGAAT
GTTCTGTATGAAGGTAATCTTTTCCAGCAAGCAATCGCCACTGCGGAGAG
CGTGTTTCTCGATCTCGCAGGCCGACAGTAG