Gcaud3777.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3777.t1
Unique Name	Gcaud3777.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	521

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_970_length_15649_cov_4.666024	contig	NODE_970_length_15649_cov_4.666024:705..2267 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121921.KB898707_gene779
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	9.74e-50
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria
Description	ASPIC and UnbV
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3777	Gcaud3777	Gracilaria caudata M_176_S67 male	gene	NODE_970_length_15649_cov_4.666024 705..2267 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3777.t1.start1	Gcaud3777.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_970_length_15649_cov_4.666024 705..707 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3777.t1.CDS1	Gcaud3777.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_970_length_15649_cov_4.666024 705..2267 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3777.t1.exon1	Gcaud3777.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_970_length_15649_cov_4.666024 705..2267 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3777.t1.stop1	Gcaud3777.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_970_length_15649_cov_4.666024 2265..2267 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3777.t1	Gcaud3777.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_970_length_15649_cov_4.666024 705..2267 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_970_length_15649_cov_4.666024:705..2267+
coding sequence from alignment at NODE_970_length_15649_cov_4.666024:705..2267+

mRNA sequence

>Gcaud3777.t1 ID=Gcaud3777.t1|Name=Gcaud3777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=521bp
MFACVLRLLLLTLCAQRGGAQRINFDITAPSRVAYTPIVPTFYDVTARAG
IDTRVRWKKYGSPAVADLDRDGWPDLLFCHHDSTRVELYFNNGDGTFSKA
DWGEWRDNHGFSPFPIDSRERGLYFTLSVGGNNGNKLNHPFMFAVDARTR
AVRDVSNAVGVNYKGGRGRSAVFMDLSMGKHPFWPDVIFTNAKPRFGATQ
FAYEHVATNKFKLRALKGGFANDINWYATVTDLENDGVMEVITYWKLRIW
RLVAPFKFKEITDNVLPADMERGGVVSVAEIDFDNDGDFDLYVARTKSGD
LSWQKGNVFEDYLLENRNGVYYDVTDRARIPRRTTPRGVTVGDLNNDGWM
DLYVTQYKQPDNILLNNADGTFTSVSGLTKRASNVRGDHAVAVDYDLDGR
VDLVSGQGDQIKQGLGGSFRIFRNVIGNNVGNYVLVRVANAWDRSCTPLN
AVVTVEAGKLRMRRRVGTAGSAVSQSYLETVHFGLGSISWIDVIYVKYSN
GYVDLRRGVRANQLVFIGKL*

spliced messenger RNA

>Gcaud3777.t1 ID=Gcaud3777.t1|Name=Gcaud3777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_970_length_15649_cov_4.666024:705..2267+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCATGTGTGTTGCGGCTGCTGCTACTGACGCTGTGCGCCCAGCG
TGGCGGCGCGCAACGCATTAACTTTGACATCACGGCACCGTCGCGCGTCG
CGTACACGCCCATCGTGCCCACGTTTTACGACGTCACTGCGCGCGCGGGC
ATCGACACGCGCGTGCGATGGAAGAAGTATGGCAGTCCGGCGGTGGCGGA
CCTCGATCGCGATGGATGGCCGGACCTGCTGTTCTGTCACCACGACTCCA
CGCGCGTGGAGCTGTACTTCAACAACGGCGACGGCACCTTCTCCAAGGCC
GATTGGGGCGAATGGCGCGACAATCATGGCTTCTCTCCGTTCCCCATCGA
CTCGCGCGAGCGCGGGCTGTACTTCACGCTGTCGGTGGGCGGCAACAATG
GCAACAAGTTGAATCACCCGTTCATGTTTGCGGTGGACGCGCGTACACGC
GCGGTGCGGGATGTGTCCAACGCGGTGGGTGTCAACTATAAAGGAGGGCG
GGGTCGTTCGGCCGTTTTCATGGACTTGTCCATGGGAAAGCACCCGTTTT
GGCCGGACGTCATCTTCACCAATGCCAAGCCGCGCTTCGGCGCCACGCAG
TTTGCGTACGAGCACGTGGCCACCAACAAGTTCAAGCTGCGCGCATTGAA
GGGCGGCTTCGCCAACGATATCAACTGGTATGCCACCGTCACCGACCTGG
AAAACGACGGCGTCATGGAGGTCATCACGTACTGGAAGCTTCGCATCTGG
CGTCTGGTGGCGCCGTTCAAGTTCAAGGAGATTACGGACAATGTGTTGCC
GGCCGATATGGAACGCGGCGGCGTGGTGTCCGTGGCGGAGATTGACTTTG
ACAATGACGGCGACTTTGATCTGTATGTGGCGCGCACCAAGTCGGGCGAC
CTTTCTTGGCAGAAGGGCAACGTGTTTGAGGACTACCTGTTGGAGAACCG
CAACGGCGTGTATTACGATGTCACCGATCGCGCCAGGATTCCGCGCCGCA
CCACGCCGAGAGGCGTCACGGTGGGCGATTTGAACAACGATGGGTGGATG
GATTTGTATGTAACGCAGTACAAACAGCCCGATAACATCCTGCTCAACAA
CGCGGACGGCACGTTTACCAGCGTGAGCGGGCTCACCAAGAGAGCGTCCA
ACGTTCGCGGAGACCATGCGGTGGCGGTGGACTACGATCTGGACGGCAGA
GTGGACCTCGTATCCGGACAGGGCGACCAAATCAAGCAGGGTTTGGGCGG
TTCGTTCCGCATCTTCCGCAACGTGATAGGCAACAATGTGGGCAATTACG
TGCTGGTGCGCGTGGCGAACGCTTGGGACCGCTCTTGCACGCCTTTGAAC
GCGGTGGTGACGGTGGAGGCGGGCAAGCTCAGAATGAGGCGTCGCGTGGG
AACGGCGGGCAGCGCCGTGTCGCAGTCGTACCTGGAGACGGTGCACTTCG
GGCTGGGCTCCATCTCGTGGATCGATGTGATCTACGTCAAGTACTCCAAC
GGATACGTGGACCTGAGGCGGGGGGTGCGCGCCAACCAGCTTGTATTCAT
AGGAAAGTTGTGA

protein sequence of Gcaud3777.t1

>Gcaud3777.t1 ID=Gcaud3777.t1|Name=Gcaud3777.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=521bp
MFACVLRLLLLTLCAQRGGAQRINFDITAPSRVAYTPIVPTFYDVTARAG
IDTRVRWKKYGSPAVADLDRDGWPDLLFCHHDSTRVELYFNNGDGTFSKA
DWGEWRDNHGFSPFPIDSRERGLYFTLSVGGNNGNKLNHPFMFAVDARTR
AVRDVSNAVGVNYKGGRGRSAVFMDLSMGKHPFWPDVIFTNAKPRFGATQ
FAYEHVATNKFKLRALKGGFANDINWYATVTDLENDGVMEVITYWKLRIW
RLVAPFKFKEITDNVLPADMERGGVVSVAEIDFDNDGDFDLYVARTKSGD
LSWQKGNVFEDYLLENRNGVYYDVTDRARIPRRTTPRGVTVGDLNNDGWM
DLYVTQYKQPDNILLNNADGTFTSVSGLTKRASNVRGDHAVAVDYDLDGR
VDLVSGQGDQIKQGLGGSFRIFRNVIGNNVGNYVLVRVANAWDRSCTPLN
AVVTVEAGKLRMRRRVGTAGSAVSQSYLETVHFGLGSISWIDVIYVKYSN
GYVDLRRGVRANQLVFIGKL*

mRNA from alignment at NODE_970_length_15649_cov_4.666024:705..2267+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3777.t1 ID=Gcaud3777.t1|Name=Gcaud3777.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1563bp|location=Sequence derived from alignment at NODE_970_length_15649_cov_4.666024:705..2267+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCATGTGTGTTGCGGCTGCTGCTACTGACGCTGTGCGCCCAGCG
TGGCGGCGCGCAACGCATTAACTTTGACATCACGGCACCGTCGCGCGTCG
CGTACACGCCCATCGTGCCCACGTTTTACGACGTCACTGCGCGCGCGGGC
ATCGACACGCGCGTGCGATGGAAGAAGTATGGCAGTCCGGCGGTGGCGGA
CCTCGATCGCGATGGATGGCCGGACCTGCTGTTCTGTCACCACGACTCCA
CGCGCGTGGAGCTGTACTTCAACAACGGCGACGGCACCTTCTCCAAGGCC
GATTGGGGCGAATGGCGCGACAATCATGGCTTCTCTCCGTTCCCCATCGA
CTCGCGCGAGCGCGGGCTGTACTTCACGCTGTCGGTGGGCGGCAACAATG
GCAACAAGTTGAATCACCCGTTCATGTTTGCGGTGGACGCGCGTACACGC
GCGGTGCGGGATGTGTCCAACGCGGTGGGTGTCAACTATAAAGGAGGGCG
GGGTCGTTCGGCCGTTTTCATGGACTTGTCCATGGGAAAGCACCCGTTTT
GGCCGGACGTCATCTTCACCAATGCCAAGCCGCGCTTCGGCGCCACGCAG
TTTGCGTACGAGCACGTGGCCACCAACAAGTTCAAGCTGCGCGCATTGAA
GGGCGGCTTCGCCAACGATATCAACTGGTATGCCACCGTCACCGACCTGG
AAAACGACGGCGTCATGGAGGTCATCACGTACTGGAAGCTTCGCATCTGG
CGTCTGGTGGCGCCGTTCAAGTTCAAGGAGATTACGGACAATGTGTTGCC
GGCCGATATGGAACGCGGCGGCGTGGTGTCCGTGGCGGAGATTGACTTTG
ACAATGACGGCGACTTTGATCTGTATGTGGCGCGCACCAAGTCGGGCGAC
CTTTCTTGGCAGAAGGGCAACGTGTTTGAGGACTACCTGTTGGAGAACCG
CAACGGCGTGTATTACGATGTCACCGATCGCGCCAGGATTCCGCGCCGCA
CCACGCCGAGAGGCGTCACGGTGGGCGATTTGAACAACGATGGGTGGATG
GATTTGTATGTAACGCAGTACAAACAGCCCGATAACATCCTGCTCAACAA
CGCGGACGGCACGTTTACCAGCGTGAGCGGGCTCACCAAGAGAGCGTCCA
ACGTTCGCGGAGACCATGCGGTGGCGGTGGACTACGATCTGGACGGCAGA
GTGGACCTCGTATCCGGACAGGGCGACCAAATCAAGCAGGGTTTGGGCGG
TTCGTTCCGCATCTTCCGCAACGTGATAGGCAACAATGTGGGCAATTACG
TGCTGGTGCGCGTGGCGAACGCTTGGGACCGCTCTTGCACGCCTTTGAAC
GCGGTGGTGACGGTGGAGGCGGGCAAGCTCAGAATGAGGCGTCGCGTGGG
AACGGCGGGCAGCGCCGTGTCGCAGTCGTACCTGGAGACGGTGCACTTCG
GGCTGGGCTCCATCTCGTGGATCGATGTGATCTACGTCAAGTACTCCAAC
GGATACGTGGACCTGAGGCGGGGGGTGCGCGCCAACCAGCTTGTATTCAT
AGGAAAGTTGTGA

Coding sequence (CDS) from alignment at NODE_970_length_15649_cov_4.666024:705..2267+

>Gcaud3777.t1 ID=Gcaud3777.t1|Name=Gcaud3777.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1563bp|location=Sequence derived from alignment at NODE_970_length_15649_cov_4.666024:705..2267+ (Gracilaria caudata M_176_S67 male)
ATGTTTGCATGTGTGTTGCGGCTGCTGCTACTGACGCTGTGCGCCCAGCG
TGGCGGCGCGCAACGCATTAACTTTGACATCACGGCACCGTCGCGCGTCG
CGTACACGCCCATCGTGCCCACGTTTTACGACGTCACTGCGCGCGCGGGC
ATCGACACGCGCGTGCGATGGAAGAAGTATGGCAGTCCGGCGGTGGCGGA
CCTCGATCGCGATGGATGGCCGGACCTGCTGTTCTGTCACCACGACTCCA
CGCGCGTGGAGCTGTACTTCAACAACGGCGACGGCACCTTCTCCAAGGCC
GATTGGGGCGAATGGCGCGACAATCATGGCTTCTCTCCGTTCCCCATCGA
CTCGCGCGAGCGCGGGCTGTACTTCACGCTGTCGGTGGGCGGCAACAATG
GCAACAAGTTGAATCACCCGTTCATGTTTGCGGTGGACGCGCGTACACGC
GCGGTGCGGGATGTGTCCAACGCGGTGGGTGTCAACTATAAAGGAGGGCG
GGGTCGTTCGGCCGTTTTCATGGACTTGTCCATGGGAAAGCACCCGTTTT
GGCCGGACGTCATCTTCACCAATGCCAAGCCGCGCTTCGGCGCCACGCAG
TTTGCGTACGAGCACGTGGCCACCAACAAGTTCAAGCTGCGCGCATTGAA
GGGCGGCTTCGCCAACGATATCAACTGGTATGCCACCGTCACCGACCTGG
AAAACGACGGCGTCATGGAGGTCATCACGTACTGGAAGCTTCGCATCTGG
CGTCTGGTGGCGCCGTTCAAGTTCAAGGAGATTACGGACAATGTGTTGCC
GGCCGATATGGAACGCGGCGGCGTGGTGTCCGTGGCGGAGATTGACTTTG
ACAATGACGGCGACTTTGATCTGTATGTGGCGCGCACCAAGTCGGGCGAC
CTTTCTTGGCAGAAGGGCAACGTGTTTGAGGACTACCTGTTGGAGAACCG
CAACGGCGTGTATTACGATGTCACCGATCGCGCCAGGATTCCGCGCCGCA
CCACGCCGAGAGGCGTCACGGTGGGCGATTTGAACAACGATGGGTGGATG
GATTTGTATGTAACGCAGTACAAACAGCCCGATAACATCCTGCTCAACAA
CGCGGACGGCACGTTTACCAGCGTGAGCGGGCTCACCAAGAGAGCGTCCA
ACGTTCGCGGAGACCATGCGGTGGCGGTGGACTACGATCTGGACGGCAGA
GTGGACCTCGTATCCGGACAGGGCGACCAAATCAAGCAGGGTTTGGGCGG
TTCGTTCCGCATCTTCCGCAACGTGATAGGCAACAATGTGGGCAATTACG
TGCTGGTGCGCGTGGCGAACGCTTGGGACCGCTCTTGCACGCCTTTGAAC
GCGGTGGTGACGGTGGAGGCGGGCAAGCTCAGAATGAGGCGTCGCGTGGG
AACGGCGGGCAGCGCCGTGTCGCAGTCGTACCTGGAGACGGTGCACTTCG
GGCTGGGCTCCATCTCGTGGATCGATGTGATCTACGTCAAGTACTCCAAC
GGATACGTGGACCTGAGGCGGGGGGTGCGCGCCAACCAGCTTGTATTCAT
AGGAAAGTTGTGA