Gcaud3776.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3776.t2
Unique Name	Gcaud3776.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	556

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_94_length_52825_cov_4.981075	contig	NODE_94_length_52825_cov_4.981075:46353..48020 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3776	Gcaud3776	Gracilaria caudata M_176_S67 male	gene	NODE_94_length_52825_cov_4.981075 46353..50750 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3776.t2.stop1	Gcaud3776.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_94_length_52825_cov_4.981075 46353..46355 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3776.t2.CDS1	Gcaud3776.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_94_length_52825_cov_4.981075 46353..48020 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3776.t2.exon1	Gcaud3776.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_94_length_52825_cov_4.981075 46353..48020 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3776.t2.start1	Gcaud3776.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_94_length_52825_cov_4.981075 48018..48020 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3776.t2	Gcaud3776.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_94_length_52825_cov_4.981075 46353..48020 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_94_length_52825_cov_4.981075:46353..48020-
coding sequence from alignment at NODE_94_length_52825_cov_4.981075:46353..48020-

mRNA sequence

>Gcaud3776.t2 ID=Gcaud3776.t2|Name=Gcaud3776.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=556bp
MLDFFQTVGNNLMHDLEDICLSELELLSEDSSLSFGVRNAINALGWLGQF
SVDSLVAFKATEAILIASEVGVVTKCFARKACFKCLATVYECDGRVLWNE
TDVGWIRNDSLTSWSLKRRRSVDIESVVDVQMDPEPWIQLPVKHGRGKTA
VESLRVLQYFTGMHVSSAIDEGCGWVRELSQAFRGEVTPNSQPSAMDHIH
AQKFSRSPDAQKRYAVCDVLLDMLGLRTILETLMQVAVAALRISEISESL
SSDDSSSDHGTPIPTVSSALRLFAGILSLHQRNRAAVLEAKNNNPETKGF
TIDVEADHIVISSSITVLQTTRTRIEELLFWYSNPCVDVSQLPLATIDLI
QGIVGLTTKIVKQTSDFAEIVKREHSIPAEDEQRSTPSKRPRKSPGYMKR
KQRSMHDERNDNLTKSLRLIPKLVSYSESALLSVKKLAKTVGLRTTRSLL
NFAPLAVEDDSSLHFGVGLRQHDVSSDDLPCYDNPEAVEAVGDSGEEHDL
LQTTREKCIDPNSPSFDLPEDGEQPNAKLRDMSREPETIKINIRRGANRL
RTISP*

spliced messenger RNA

>Gcaud3776.t2 ID=Gcaud3776.t2|Name=Gcaud3776.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:46353..48020- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACTTCTTTCAGACTGTTGGCAATAATCTCATGCATGATCTAGA
AGATATATGCCTGTCTGAGCTAGAGCTACTGAGCGAAGACAGCAGCCTTT
CTTTCGGAGTACGAAATGCTATAAATGCGTTGGGGTGGCTCGGCCAGTTC
TCAGTGGACTCACTTGTGGCTTTCAAGGCTACAGAGGCCATCCTCATTGC
TAGCGAAGTTGGCGTTGTAACGAAATGCTTTGCCCGAAAAGCGTGCTTTA
AATGCCTTGCCACGGTCTATGAGTGCGATGGGCGAGTCTTATGGAATGAA
ACAGATGTTGGATGGATTCGTAATGATTCGTTAACTTCTTGGTCGTTAAA
GCGGCGAAGAAGCGTTGATATAGAGTCAGTAGTAGATGTACAGATGGATC
CAGAACCCTGGATTCAGCTTCCAGTGAAGCATGGGCGAGGAAAAACTGCT
GTGGAAAGCCTCAGAGTTCTGCAGTACTTCACAGGAATGCATGTGTCGAG
TGCGATTGATGAAGGATGTGGATGGGTTCGTGAACTCTCACAAGCTTTTC
GAGGTGAGGTTACACCAAACTCGCAGCCATCCGCAATGGATCACATCCAC
GCACAGAAATTCTCCCGCTCGCCTGACGCCCAGAAGAGATATGCCGTATG
TGACGTTCTGCTTGACATGCTTGGTCTTAGAACAATCCTTGAGACTTTGA
TGCAAGTTGCTGTCGCGGCGCTGCGGATCTCCGAAATATCTGAGTCATTG
TCATCAGACGATTCATCCTCAGATCATGGAACCCCAATTCCAACCGTGAG
TTCTGCATTACGACTGTTCGCTGGTATTCTAAGTCTGCACCAGCGCAATA
GGGCGGCAGTTCTTGAAGCAAAGAACAACAACCCTGAAACCAAGGGCTTC
ACAATCGATGTAGAGGCGGACCACATCGTGATTAGTAGCTCTATTACTGT
GTTGCAAACGACTCGGACTCGAATTGAGGAGCTTTTGTTCTGGTATTCCA
ATCCTTGCGTTGACGTATCACAACTTCCTCTCGCAACGATTGACCTCATC
CAAGGCATCGTGGGCCTTACCACCAAAATTGTGAAACAAACATCGGACTT
TGCTGAAATCGTGAAAAGGGAACATTCGATTCCCGCCGAAGATGAGCAAA
GATCAACCCCATCGAAACGTCCAAGAAAATCACCAGGATACATGAAACGG
AAACAAAGAAGCATGCATGATGAGCGAAACGACAACCTCACGAAGTCGTT
AAGGCTCATACCAAAGTTAGTTTCCTACAGTGAGAGCGCCCTGCTGAGCG
TCAAGAAACTCGCGAAAACTGTCGGGCTACGAACGACTCGCTCCCTTTTG
AATTTCGCTCCATTAGCCGTTGAAGATGATTCCTCGTTACATTTCGGCGT
TGGGCTTAGGCAGCATGATGTCTCCAGTGATGATTTGCCATGCTATGATA
ATCCTGAAGCCGTTGAAGCTGTTGGGGACTCAGGGGAAGAGCACGACCTT
CTACAGACCACGCGAGAAAAGTGCATTGATCCCAACTCGCCATCATTTGA
TCTACCAGAAGATGGTGAGCAGCCAAATGCAAAACTTCGTGACATGAGCC
GCGAACCAGAGACAATAAAAATTAATATCCGACGGGGAGCAAACCGACTA
CGAACGATATCTCCCTAG

protein sequence of Gcaud3776.t2

>Gcaud3776.t2 ID=Gcaud3776.t2|Name=Gcaud3776.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=556bp
MLDFFQTVGNNLMHDLEDICLSELELLSEDSSLSFGVRNAINALGWLGQF
SVDSLVAFKATEAILIASEVGVVTKCFARKACFKCLATVYECDGRVLWNE
TDVGWIRNDSLTSWSLKRRRSVDIESVVDVQMDPEPWIQLPVKHGRGKTA
VESLRVLQYFTGMHVSSAIDEGCGWVRELSQAFRGEVTPNSQPSAMDHIH
AQKFSRSPDAQKRYAVCDVLLDMLGLRTILETLMQVAVAALRISEISESL
SSDDSSSDHGTPIPTVSSALRLFAGILSLHQRNRAAVLEAKNNNPETKGF
TIDVEADHIVISSSITVLQTTRTRIEELLFWYSNPCVDVSQLPLATIDLI
QGIVGLTTKIVKQTSDFAEIVKREHSIPAEDEQRSTPSKRPRKSPGYMKR
KQRSMHDERNDNLTKSLRLIPKLVSYSESALLSVKKLAKTVGLRTTRSLL
NFAPLAVEDDSSLHFGVGLRQHDVSSDDLPCYDNPEAVEAVGDSGEEHDL
LQTTREKCIDPNSPSFDLPEDGEQPNAKLRDMSREPETIKINIRRGANRL
RTISP*

mRNA from alignment at NODE_94_length_52825_cov_4.981075:46353..48020-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3776.t2 ID=Gcaud3776.t2|Name=Gcaud3776.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1668bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:46353..48020- (Gracilaria caudata M_176_S67 male)
ATGCTTGACTTCTTTCAGACTGTTGGCAATAATCTCATGCATGATCTAGA
AGATATATGCCTGTCTGAGCTAGAGCTACTGAGCGAAGACAGCAGCCTTT
CTTTCGGAGTACGAAATGCTATAAATGCGTTGGGGTGGCTCGGCCAGTTC
TCAGTGGACTCACTTGTGGCTTTCAAGGCTACAGAGGCCATCCTCATTGC
TAGCGAAGTTGGCGTTGTAACGAAATGCTTTGCCCGAAAAGCGTGCTTTA
AATGCCTTGCCACGGTCTATGAGTGCGATGGGCGAGTCTTATGGAATGAA
ACAGATGTTGGATGGATTCGTAATGATTCGTTAACTTCTTGGTCGTTAAA
GCGGCGAAGAAGCGTTGATATAGAGTCAGTAGTAGATGTACAGATGGATC
CAGAACCCTGGATTCAGCTTCCAGTGAAGCATGGGCGAGGAAAAACTGCT
GTGGAAAGCCTCAGAGTTCTGCAGTACTTCACAGGAATGCATGTGTCGAG
TGCGATTGATGAAGGATGTGGATGGGTTCGTGAACTCTCACAAGCTTTTC
GAGGTGAGGTTACACCAAACTCGCAGCCATCCGCAATGGATCACATCCAC
GCACAGAAATTCTCCCGCTCGCCTGACGCCCAGAAGAGATATGCCGTATG
TGACGTTCTGCTTGACATGCTTGGTCTTAGAACAATCCTTGAGACTTTGA
TGCAAGTTGCTGTCGCGGCGCTGCGGATCTCCGAAATATCTGAGTCATTG
TCATCAGACGATTCATCCTCAGATCATGGAACCCCAATTCCAACCGTGAG
TTCTGCATTACGACTGTTCGCTGGTATTCTAAGTCTGCACCAGCGCAATA
GGGCGGCAGTTCTTGAAGCAAAGAACAACAACCCTGAAACCAAGGGCTTC
ACAATCGATGTAGAGGCGGACCACATCGTGATTAGTAGCTCTATTACTGT
GTTGCAAACGACTCGGACTCGAATTGAGGAGCTTTTGTTCTGGTATTCCA
ATCCTTGCGTTGACGTATCACAACTTCCTCTCGCAACGATTGACCTCATC
CAAGGCATCGTGGGCCTTACCACCAAAATTGTGAAACAAACATCGGACTT
TGCTGAAATCGTGAAAAGGGAACATTCGATTCCCGCCGAAGATGAGCAAA
GATCAACCCCATCGAAACGTCCAAGAAAATCACCAGGATACATGAAACGG
AAACAAAGAAGCATGCATGATGAGCGAAACGACAACCTCACGAAGTCGTT
AAGGCTCATACCAAAGTTAGTTTCCTACAGTGAGAGCGCCCTGCTGAGCG
TCAAGAAACTCGCGAAAACTGTCGGGCTACGAACGACTCGCTCCCTTTTG
AATTTCGCTCCATTAGCCGTTGAAGATGATTCCTCGTTACATTTCGGCGT
TGGGCTTAGGCAGCATGATGTCTCCAGTGATGATTTGCCATGCTATGATA
ATCCTGAAGCCGTTGAAGCTGTTGGGGACTCAGGGGAAGAGCACGACCTT
CTACAGACCACGCGAGAAAAGTGCATTGATCCCAACTCGCCATCATTTGA
TCTACCAGAAGATGGTGAGCAGCCAAATGCAAAACTTCGTGACATGAGCC
GCGAACCAGAGACAATAAAAATTAATATCCGACGGGGAGCAAACCGACTA
CGAACGATATCTCCCTAG

Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:46353..48020-

>Gcaud3776.t2 ID=Gcaud3776.t2|Name=Gcaud3776.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1668bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:46353..48020- (Gracilaria caudata M_176_S67 male)
ATGCTTGACTTCTTTCAGACTGTTGGCAATAATCTCATGCATGATCTAGA
AGATATATGCCTGTCTGAGCTAGAGCTACTGAGCGAAGACAGCAGCCTTT
CTTTCGGAGTACGAAATGCTATAAATGCGTTGGGGTGGCTCGGCCAGTTC
TCAGTGGACTCACTTGTGGCTTTCAAGGCTACAGAGGCCATCCTCATTGC
TAGCGAAGTTGGCGTTGTAACGAAATGCTTTGCCCGAAAAGCGTGCTTTA
AATGCCTTGCCACGGTCTATGAGTGCGATGGGCGAGTCTTATGGAATGAA
ACAGATGTTGGATGGATTCGTAATGATTCGTTAACTTCTTGGTCGTTAAA
GCGGCGAAGAAGCGTTGATATAGAGTCAGTAGTAGATGTACAGATGGATC
CAGAACCCTGGATTCAGCTTCCAGTGAAGCATGGGCGAGGAAAAACTGCT
GTGGAAAGCCTCAGAGTTCTGCAGTACTTCACAGGAATGCATGTGTCGAG
TGCGATTGATGAAGGATGTGGATGGGTTCGTGAACTCTCACAAGCTTTTC
GAGGTGAGGTTACACCAAACTCGCAGCCATCCGCAATGGATCACATCCAC
GCACAGAAATTCTCCCGCTCGCCTGACGCCCAGAAGAGATATGCCGTATG
TGACGTTCTGCTTGACATGCTTGGTCTTAGAACAATCCTTGAGACTTTGA
TGCAAGTTGCTGTCGCGGCGCTGCGGATCTCCGAAATATCTGAGTCATTG
TCATCAGACGATTCATCCTCAGATCATGGAACCCCAATTCCAACCGTGAG
TTCTGCATTACGACTGTTCGCTGGTATTCTAAGTCTGCACCAGCGCAATA
GGGCGGCAGTTCTTGAAGCAAAGAACAACAACCCTGAAACCAAGGGCTTC
ACAATCGATGTAGAGGCGGACCACATCGTGATTAGTAGCTCTATTACTGT
GTTGCAAACGACTCGGACTCGAATTGAGGAGCTTTTGTTCTGGTATTCCA
ATCCTTGCGTTGACGTATCACAACTTCCTCTCGCAACGATTGACCTCATC
CAAGGCATCGTGGGCCTTACCACCAAAATTGTGAAACAAACATCGGACTT
TGCTGAAATCGTGAAAAGGGAACATTCGATTCCCGCCGAAGATGAGCAAA
GATCAACCCCATCGAAACGTCCAAGAAAATCACCAGGATACATGAAACGG
AAACAAAGAAGCATGCATGATGAGCGAAACGACAACCTCACGAAGTCGTT
AAGGCTCATACCAAAGTTAGTTTCCTACAGTGAGAGCGCCCTGCTGAGCG
TCAAGAAACTCGCGAAAACTGTCGGGCTACGAACGACTCGCTCCCTTTTG
AATTTCGCTCCATTAGCCGTTGAAGATGATTCCTCGTTACATTTCGGCGT
TGGGCTTAGGCAGCATGATGTCTCCAGTGATGATTTGCCATGCTATGATA
ATCCTGAAGCCGTTGAAGCTGTTGGGGACTCAGGGGAAGAGCACGACCTT
CTACAGACCACGCGAGAAAAGTGCATTGATCCCAACTCGCCATCATTTGA
TCTACCAGAAGATGGTGAGCAGCCAAATGCAAAACTTCGTGACATGAGCC
GCGAACCAGAGACAATAAAAATTAATATCCGACGGGGAGCAAACCGACTA
CGAACGATATCTCCCTAG