Gcaud3768.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3768.t1
Unique Name	Gcaud3768.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_94_length_52825_cov_4.981075	contig	NODE_94_length_52825_cov_4.981075:29386..30408 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_10449T0
Max annot lvl	2759\|Eukaryota
Evalue	3.22e-15
EggNOG OGs	2E99P@1\|root,2SFNP@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3768	Gcaud3768	Gracilaria caudata M_176_S67 male	gene	NODE_94_length_52825_cov_4.981075 29386..30408 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3768.t1.stop1	Gcaud3768.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_94_length_52825_cov_4.981075 29386..29388 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3768.t1.CDS1	Gcaud3768.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_94_length_52825_cov_4.981075 29386..30408 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3768.t1.exon1	Gcaud3768.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_94_length_52825_cov_4.981075 29386..30408 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3768.t1.start1	Gcaud3768.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_94_length_52825_cov_4.981075 30406..30408 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3768.t1	Gcaud3768.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_94_length_52825_cov_4.981075 29386..30408 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_94_length_52825_cov_4.981075:29386..30408-
coding sequence from alignment at NODE_94_length_52825_cov_4.981075:29386..30408-

mRNA sequence

>Gcaud3768.t1 ID=Gcaud3768.t1|Name=Gcaud3768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MAPSLRPPPTSALLSEQPAASQSFLTFILRATPSAVRHACLGALVATTFI
TIGAMLSFFYGPSSPLRLSHPTDHAFTEQTPARAHNSVQAESEALPTPSA
KPAVEIKLPVEGPQPPQAEQRLYKKKALVKYAEIWMSTLEVNLILRNLDG
KKVYIEYGSGGSTFNFPQFVQHAVSIEHDRQWCEKVKQKLATKPNLSHID
YRCFFVDKGFRDFNIRGNTEGTYPMFREYVDQIDSAGHDLYDFVLIDGRA
RVDCSIKVLSYISQNTAVFIHDSLRFFITGEYSSALDYYDMIDSIGGDNR
RGIVLLRRKKEFEILQGDHAAVQNILNKKYNLSSDTTTST*

spliced messenger RNA

>Gcaud3768.t1 ID=Gcaud3768.t1|Name=Gcaud3768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:29386..30408- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTTCACTACGACCACCACCCACCTCCGCCCTGCTCTCCGAGCA
ACCTGCGGCGTCGCAAAGCTTCCTCACATTCATCTTGAGAGCCACGCCAT
CTGCTGTTCGCCACGCCTGTCTGGGCGCTCTGGTGGCCACCACCTTCATC
ACCATCGGCGCCATGCTGTCCTTCTTCTACGGACCTTCCTCGCCGTTACG
TCTTTCACACCCCACCGACCACGCGTTCACGGAGCAGACTCCGGCGCGTG
CTCACAACTCTGTGCAGGCTGAATCGGAAGCGCTGCCGACTCCGAGCGCG
AAACCTGCTGTCGAGATCAAGCTGCCCGTGGAAGGGCCGCAACCACCGCA
GGCGGAACAGAGGCTGTACAAGAAAAAGGCGCTTGTCAAGTATGCTGAGA
TCTGGATGAGTACGCTTGAGGTCAATCTTATACTTCGAAATCTTGATGGC
AAGAAGGTTTATATTGAGTATGGTAGTGGTGGCAGTACTTTCAATTTCCC
GCAATTTGTTCAACATGCTGTGTCAATCGAACATGATCGACAGTGGTGTG
AAAAGGTCAAACAAAAGTTGGCTACCAAACCTAACCTGTCTCATATTGAT
TATCGATGTTTTTTCGTGGACAAGGGCTTTAGGGACTTTAACATCCGCGG
TAATACGGAGGGAACTTATCCTATGTTTAGGGAATATGTTGATCAGATTG
ATTCTGCTGGTCATGACTTGTATGACTTTGTTCTCATTGATGGCAGAGCC
AGGGTTGACTGTTCCATCAAGGTGCTAAGCTATATTTCTCAAAATACAGC
TGTGTTTATACATGACAGTTTGCGTTTCTTCATCACCGGTGAATACTCTT
CTGCTCTTGATTATTATGACATGATTGATTCTATTGGAGGTGATAATCGT
CGCGGTATTGTGTTGTTGCGAAGAAAGAAGGAGTTTGAGATTCTTCAGGG
CGATCATGCTGCCGTACAAAACATCCTTAACAAGAAGTATAATCTCTCAT
CCGACACTACTACATCGACATGA

protein sequence of Gcaud3768.t1

>Gcaud3768.t1 ID=Gcaud3768.t1|Name=Gcaud3768.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MAPSLRPPPTSALLSEQPAASQSFLTFILRATPSAVRHACLGALVATTFI
TIGAMLSFFYGPSSPLRLSHPTDHAFTEQTPARAHNSVQAESEALPTPSA
KPAVEIKLPVEGPQPPQAEQRLYKKKALVKYAEIWMSTLEVNLILRNLDG
KKVYIEYGSGGSTFNFPQFVQHAVSIEHDRQWCEKVKQKLATKPNLSHID
YRCFFVDKGFRDFNIRGNTEGTYPMFREYVDQIDSAGHDLYDFVLIDGRA
RVDCSIKVLSYISQNTAVFIHDSLRFFITGEYSSALDYYDMIDSIGGDNR
RGIVLLRRKKEFEILQGDHAAVQNILNKKYNLSSDTTTST*

mRNA from alignment at NODE_94_length_52825_cov_4.981075:29386..30408-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3768.t1 ID=Gcaud3768.t1|Name=Gcaud3768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:29386..30408- (Gracilaria caudata M_176_S67 male)
ATGGCGCCTTCACTACGACCACCACCCACCTCCGCCCTGCTCTCCGAGCA
ACCTGCGGCGTCGCAAAGCTTCCTCACATTCATCTTGAGAGCCACGCCAT
CTGCTGTTCGCCACGCCTGTCTGGGCGCTCTGGTGGCCACCACCTTCATC
ACCATCGGCGCCATGCTGTCCTTCTTCTACGGACCTTCCTCGCCGTTACG
TCTTTCACACCCCACCGACCACGCGTTCACGGAGCAGACTCCGGCGCGTG
CTCACAACTCTGTGCAGGCTGAATCGGAAGCGCTGCCGACTCCGAGCGCG
AAACCTGCTGTCGAGATCAAGCTGCCCGTGGAAGGGCCGCAACCACCGCA
GGCGGAACAGAGGCTGTACAAGAAAAAGGCGCTTGTCAAGTATGCTGAGA
TCTGGATGAGTACGCTTGAGGTCAATCTTATACTTCGAAATCTTGATGGC
AAGAAGGTTTATATTGAGTATGGTAGTGGTGGCAGTACTTTCAATTTCCC
GCAATTTGTTCAACATGCTGTGTCAATCGAACATGATCGACAGTGGTGTG
AAAAGGTCAAACAAAAGTTGGCTACCAAACCTAACCTGTCTCATATTGAT
TATCGATGTTTTTTCGTGGACAAGGGCTTTAGGGACTTTAACATCCGCGG
TAATACGGAGGGAACTTATCCTATGTTTAGGGAATATGTTGATCAGATTG
ATTCTGCTGGTCATGACTTGTATGACTTTGTTCTCATTGATGGCAGAGCC
AGGGTTGACTGTTCCATCAAGGTGCTAAGCTATATTTCTCAAAATACAGC
TGTGTTTATACATGACAGTTTGCGTTTCTTCATCACCGGTGAATACTCTT
CTGCTCTTGATTATTATGACATGATTGATTCTATTGGAGGTGATAATCGT
CGCGGTATTGTGTTGTTGCGAAGAAAGAAGGAGTTTGAGATTCTTCAGGG
CGATCATGCTGCCGTACAAAACATCCTTAACAAGAAGTATAATCTCTCAT
CCGACACTACTACATCGACATGA

Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:29386..30408-

>Gcaud3768.t1 ID=Gcaud3768.t1|Name=Gcaud3768.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:29386..30408- (Gracilaria caudata M_176_S67 male)
ATGGCGCCTTCACTACGACCACCACCCACCTCCGCCCTGCTCTCCGAGCA
ACCTGCGGCGTCGCAAAGCTTCCTCACATTCATCTTGAGAGCCACGCCAT
CTGCTGTTCGCCACGCCTGTCTGGGCGCTCTGGTGGCCACCACCTTCATC
ACCATCGGCGCCATGCTGTCCTTCTTCTACGGACCTTCCTCGCCGTTACG
TCTTTCACACCCCACCGACCACGCGTTCACGGAGCAGACTCCGGCGCGTG
CTCACAACTCTGTGCAGGCTGAATCGGAAGCGCTGCCGACTCCGAGCGCG
AAACCTGCTGTCGAGATCAAGCTGCCCGTGGAAGGGCCGCAACCACCGCA
GGCGGAACAGAGGCTGTACAAGAAAAAGGCGCTTGTCAAGTATGCTGAGA
TCTGGATGAGTACGCTTGAGGTCAATCTTATACTTCGAAATCTTGATGGC
AAGAAGGTTTATATTGAGTATGGTAGTGGTGGCAGTACTTTCAATTTCCC
GCAATTTGTTCAACATGCTGTGTCAATCGAACATGATCGACAGTGGTGTG
AAAAGGTCAAACAAAAGTTGGCTACCAAACCTAACCTGTCTCATATTGAT
TATCGATGTTTTTTCGTGGACAAGGGCTTTAGGGACTTTAACATCCGCGG
TAATACGGAGGGAACTTATCCTATGTTTAGGGAATATGTTGATCAGATTG
ATTCTGCTGGTCATGACTTGTATGACTTTGTTCTCATTGATGGCAGAGCC
AGGGTTGACTGTTCCATCAAGGTGCTAAGCTATATTTCTCAAAATACAGC
TGTGTTTATACATGACAGTTTGCGTTTCTTCATCACCGGTGAATACTCTT
CTGCTCTTGATTATTATGACATGATTGATTCTATTGGAGGTGATAATCGT
CGCGGTATTGTGTTGTTGCGAAGAAAGAAGGAGTTTGAGATTCTTCAGGG
CGATCATGCTGCCGTACAAAACATCCTTAACAAGAAGTATAATCTCTCAT
CCGACACTACTACATCGACATGA