Gcaud3761.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3761.t1
Unique NameGcaud3761.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length81
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_94_length_52825_cov_4.981075contigNODE_94_length_52825_cov_4.981075:10338..10663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264402.Cagra.1062s0018.1.p
PFAMsCmc1
Max annot lvl35493|Streptophyta
KEGG koko:K18172
Evalue7.37e-19
EggNOG OGs2CZWX@1|root,2SBZE@2759|Eukaryota,388GU@33090|Viridiplantae,3GX8J@35493|Streptophyta,3I10M@3699|Brassicales
DescriptionCOX assembly mitochondrial protein
COG categoryO
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3761Gcaud3761Gracilaria caudata M_176_S67 malegeneNODE_94_length_52825_cov_4.981075 10338..10663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3761.t1Gcaud3761.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_94_length_52825_cov_4.981075 10338..10663 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3761.t1.start1Gcaud3761.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_94_length_52825_cov_4.981075 10338..10340 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3761.t1.CDS1Gcaud3761.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 10338..10373 +
Gcaud3761.t1.CDS2Gcaud3761.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 10457..10663 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3761.t1.exon1Gcaud3761.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 10338..10373 +
Gcaud3761.t1.exon2Gcaud3761.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 10457..10663 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3761.t1.intron1Gcaud3761.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 10374..10456 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3761.t1.stop1Gcaud3761.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_94_length_52825_cov_4.981075 10661..10663 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3761.t1 ID=Gcaud3761.t1|Name=Gcaud3761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=81bp
MHPTLAPHLHPMCQEAIEVLKQCHKQHQFAKFFGACNDAKAALDKCLSQE
YLVRRELNAAKAKKEKENLRRILEEDKQIN*
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spliced messenger RNA

>Gcaud3761.t1 ID=Gcaud3761.t1|Name=Gcaud3761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=243bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:10338..10663+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCGACTCTTGCTCCTCATCTTCATCCCATGTGTCAGGAAGCAAT
CGAGGTTCTAAAGCAATGCCATAAGCAGCACCAGTTTGCGAAGTTCTTCG
GTGCCTGCAACGATGCAAAAGCCGCGCTTGACAAGTGCCTTTCACAAGAA
TACCTCGTCAGGAGGGAACTCAATGCCGCAAAGGCCAAGAAGGAGAAAGA
AAACCTCCGTCGAATCTTGGAGGAGGACAAGCAGATAAATTGA
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protein sequence of Gcaud3761.t1

>Gcaud3761.t1 ID=Gcaud3761.t1|Name=Gcaud3761.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=81bp
MHPTLAPHLHPMCQEAIEVLKQCHKQHQFAKFFGACNDAKAALDKCLSQE
YLVRRELNAAKAKKEKENLRRILEEDKQIN*
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mRNA from alignment at NODE_94_length_52825_cov_4.981075:10338..10663+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3761.t1 ID=Gcaud3761.t1|Name=Gcaud3761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=326bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:10338..10663+ (Gracilaria caudata M_176_S67 male)
ATGCATCCGACTCTTGCTCCTCATCTTCATCCCATGGTACGCTCAGACGC
GCATTCAATTTCAATGTTGTTCAAGAGCGAGATACCACATCCGAAAACGT
CTCTAACATGTGTTGCTAGTGTCAGGAAGCAATCGAGGTTCTAAAGCAAT
GCCATAAGCAGCACCAGTTTGCGAAGTTCTTCGGTGCCTGCAACGATGCA
AAAGCCGCGCTTGACAAGTGCCTTTCACAAGAATACCTCGTCAGGAGGGA
ACTCAATGCCGCAAAGGCCAAGAAGGAGAAAGAAAACCTCCGTCGAATCT
TGGAGGAGGACAAGCAGATAAATTGA
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Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:10338..10663+

>Gcaud3761.t1 ID=Gcaud3761.t1|Name=Gcaud3761.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=243bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:10338..10663+ (Gracilaria caudata M_176_S67 male)
ATGCATCCGACTCTTGCTCCTCATCTTCATCCCATGTGTCAGGAAGCAAT
CGAGGTTCTAAAGCAATGCCATAAGCAGCACCAGTTTGCGAAGTTCTTCG
GTGCCTGCAACGATGCAAAAGCCGCGCTTGACAAGTGCCTTTCACAAGAA
TACCTCGTCAGGAGGGAACTCAATGCCGCAAAGGCCAAGAAGGAGAAAGA
AAACCTCCGTCGAATCTTGGAGGAGGACAAGCAGATAAATTGA
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