Gcaud3760.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3760.t1
Unique NameGcaud3760.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_94_length_52825_cov_4.981075contigNODE_94_length_52825_cov_4.981075:8401..9635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3649.evm.model.supercontig_21.110
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K03097
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007623,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010212,GO:0010225,GO:0010332,GO:0016043,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0042752,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048511,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051276,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0090304,GO:1901360,GO:2001020
Evalue1.38e-178
EggNOG OGsKOG0668@1|root,KOG0668@2759|Eukaryota,37QV3@33090|Viridiplantae,3GATW@35493|Streptophyta,3HQKM@3699|Brassicales
EC2.7.11.1
Descriptioncasein kinase ii
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3760Gcaud3760Gracilaria caudata M_176_S67 malegeneNODE_94_length_52825_cov_4.981075 8401..9635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3760.t1Gcaud3760.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_94_length_52825_cov_4.981075 8401..9635 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3760.t1.stop1Gcaud3760.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_94_length_52825_cov_4.981075 8401..8403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3760.t1.CDS1Gcaud3760.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 8401..9376 -
Gcaud3760.t1.CDS2Gcaud3760.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_94_length_52825_cov_4.981075 9550..9635 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3760.t1.exon1Gcaud3760.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 8401..9376 -
Gcaud3760.t1.exon2Gcaud3760.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_94_length_52825_cov_4.981075 9550..9635 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3760.t1.intron1Gcaud3760.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_94_length_52825_cov_4.981075 9377..9549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3760.t1.start1Gcaud3760.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_94_length_52825_cov_4.981075 9633..9635 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3760.t1 ID=Gcaud3760.t1|Name=Gcaud3760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp
LSVATVYSDVNVRRSPDYWDYDNLQVRWGNQDDYEVVRKVGRGKYSDVFE
GVNVLKNEKCVIKILKPVKKKKIKREIKILQSLCGGTNIVQLKDICRDPH
SKVPSLIFEYINNQDFKTLFPKFTSADVRYYIYEVLKALEYAHSNGVMHR
DVKPHNIVVDHENKRLRLIDWGLAEFYFPHKEYNVRVASRYFKGPELLVD
LQDYDYSLDIWSLGCMLAGMIFRKEPFFHGHDNQDQLVKIAKVLGTKDLQ
DYLTKYGLQLDDNFTALLGSHQKKSWESFIREETRHLATPDALDLLSLML
LYDHQKRITAKEAMAHHFFASVRQAEMKARELGRSGNGTTEMGSGSDAMS
IVS*
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spliced messenger RNA

>Gcaud3760.t1 ID=Gcaud3760.t1|Name=Gcaud3760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:8401..9635- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGAGCGTCGCTACCGTCTACAGCGATGTTAACGTACGACGCTCGCCCGA
CTACTGGGACTACGACAACCTGCAAGTCCGATGGGGCAATCAAGACGATT
ACGAAGTGGTCCGAAAAGTTGGTCGTGGCAAGTATTCGGATGTGTTCGAA
GGAGTGAACGTCTTAAAGAATGAGAAATGTGTAATAAAGATTCTCAAGCC
AGTCAAGAAGAAGAAGATTAAGCGCGAGATAAAGATCCTACAAAGTCTGT
GTGGGGGTACAAACATCGTCCAGTTGAAGGATATTTGCCGTGATCCGCAT
TCGAAGGTGCCTTCGCTCATCTTCGAGTACATTAACAACCAGGACTTCAA
GACTTTGTTTCCCAAGTTTACATCTGCTGATGTGCGATATTATATCTACG
AAGTGCTCAAAGCCTTGGAATATGCACACTCGAACGGAGTGATGCACCGC
GATGTGAAGCCGCACAACATCGTGGTAGACCATGAAAACAAGAGACTTCG
ACTCATTGACTGGGGTCTCGCCGAGTTTTACTTCCCACACAAGGAGTACA
ATGTTCGTGTTGCTTCTCGGTATTTCAAAGGTCCTGAGCTGCTGGTGGAC
TTGCAAGACTATGACTACTCTCTGGATATATGGTCCCTTGGATGCATGTT
GGCAGGGATGATCTTCCGGAAAGAGCCCTTTTTTCACGGTCATGACAACC
AGGACCAGTTGGTGAAGATTGCGAAGGTTTTGGGGACCAAAGATCTTCAG
GACTATCTGACCAAGTACGGTTTGCAGTTGGACGATAACTTTACGGCTTT
GCTAGGATCCCACCAGAAGAAATCGTGGGAGAGCTTTATCAGGGAGGAAA
CCAGACACTTGGCCACTCCAGACGCGTTGGATTTACTCAGTCTCATGCTG
TTGTATGACCACCAGAAGAGAATCACAGCAAAGGAAGCAATGGCCCATCA
CTTCTTTGCTTCTGTGCGGCAGGCAGAAATGAAAGCTCGTGAGCTTGGGA
GATCTGGAAATGGCACAACTGAAATGGGGTCGGGAAGTGATGCGATGAGT
ATAGTATCGTAG
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protein sequence of Gcaud3760.t1

>Gcaud3760.t1 ID=Gcaud3760.t1|Name=Gcaud3760.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=354bp
LSVATVYSDVNVRRSPDYWDYDNLQVRWGNQDDYEVVRKVGRGKYSDVFE
GVNVLKNEKCVIKILKPVKKKKIKREIKILQSLCGGTNIVQLKDICRDPH
SKVPSLIFEYINNQDFKTLFPKFTSADVRYYIYEVLKALEYAHSNGVMHR
DVKPHNIVVDHENKRLRLIDWGLAEFYFPHKEYNVRVASRYFKGPELLVD
LQDYDYSLDIWSLGCMLAGMIFRKEPFFHGHDNQDQLVKIAKVLGTKDLQ
DYLTKYGLQLDDNFTALLGSHQKKSWESFIREETRHLATPDALDLLSLML
LYDHQKRITAKEAMAHHFFASVRQAEMKARELGRSGNGTTEMGSGSDAMS
IVS*
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mRNA from alignment at NODE_94_length_52825_cov_4.981075:8401..9635-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3760.t1 ID=Gcaud3760.t1|Name=Gcaud3760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1235bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:8401..9635- (Gracilaria caudata M_176_S67 male)
TTGAGCGTCGCTACCGTCTACAGCGATGTTAACGTACGACGCTCGCCCGA
CTACTGGGACTACGACAACCTGCAAGTCCGATGGGGGTAAGTTGCAATCG
TTCTGAACCAAGCCTTTCAGTCGTTGATCTTGCGTCTTTCGCTAGTTGGT
AGCCACCTCTGTGTGCACGACATGATTCTAACCAAAAGTCTTGTTCACAC
GCTCTACGCGACACTGCGCGACGCCACGTATTCCTCGCTTCCTTTTCGAT
CGTTACCAGCAATCAAGACGATTACGAAGTGGTCCGAAAAGTTGGTCGTG
GCAAGTATTCGGATGTGTTCGAAGGAGTGAACGTCTTAAAGAATGAGAAA
TGTGTAATAAAGATTCTCAAGCCAGTCAAGAAGAAGAAGATTAAGCGCGA
GATAAAGATCCTACAAAGTCTGTGTGGGGGTACAAACATCGTCCAGTTGA
AGGATATTTGCCGTGATCCGCATTCGAAGGTGCCTTCGCTCATCTTCGAG
TACATTAACAACCAGGACTTCAAGACTTTGTTTCCCAAGTTTACATCTGC
TGATGTGCGATATTATATCTACGAAGTGCTCAAAGCCTTGGAATATGCAC
ACTCGAACGGAGTGATGCACCGCGATGTGAAGCCGCACAACATCGTGGTA
GACCATGAAAACAAGAGACTTCGACTCATTGACTGGGGTCTCGCCGAGTT
TTACTTCCCACACAAGGAGTACAATGTTCGTGTTGCTTCTCGGTATTTCA
AAGGTCCTGAGCTGCTGGTGGACTTGCAAGACTATGACTACTCTCTGGAT
ATATGGTCCCTTGGATGCATGTTGGCAGGGATGATCTTCCGGAAAGAGCC
CTTTTTTCACGGTCATGACAACCAGGACCAGTTGGTGAAGATTGCGAAGG
TTTTGGGGACCAAAGATCTTCAGGACTATCTGACCAAGTACGGTTTGCAG
TTGGACGATAACTTTACGGCTTTGCTAGGATCCCACCAGAAGAAATCGTG
GGAGAGCTTTATCAGGGAGGAAACCAGACACTTGGCCACTCCAGACGCGT
TGGATTTACTCAGTCTCATGCTGTTGTATGACCACCAGAAGAGAATCACA
GCAAAGGAAGCAATGGCCCATCACTTCTTTGCTTCTGTGCGGCAGGCAGA
AATGAAAGCTCGTGAGCTTGGGAGATCTGGAAATGGCACAACTGAAATGG
GGTCGGGAAGTGATGCGATGAGTATAGTATCGTAG
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Coding sequence (CDS) from alignment at NODE_94_length_52825_cov_4.981075:8401..9635-

>Gcaud3760.t1 ID=Gcaud3760.t1|Name=Gcaud3760.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1062bp|location=Sequence derived from alignment at NODE_94_length_52825_cov_4.981075:8401..9635- (Gracilaria caudata M_176_S67 male)
TTGAGCGTCGCTACCGTCTACAGCGATGTTAACGTACGACGCTCGCCCGA
CTACTGGGACTACGACAACCTGCAAGTCCGATGGGGCAATCAAGACGATT
ACGAAGTGGTCCGAAAAGTTGGTCGTGGCAAGTATTCGGATGTGTTCGAA
GGAGTGAACGTCTTAAAGAATGAGAAATGTGTAATAAAGATTCTCAAGCC
AGTCAAGAAGAAGAAGATTAAGCGCGAGATAAAGATCCTACAAAGTCTGT
GTGGGGGTACAAACATCGTCCAGTTGAAGGATATTTGCCGTGATCCGCAT
TCGAAGGTGCCTTCGCTCATCTTCGAGTACATTAACAACCAGGACTTCAA
GACTTTGTTTCCCAAGTTTACATCTGCTGATGTGCGATATTATATCTACG
AAGTGCTCAAAGCCTTGGAATATGCACACTCGAACGGAGTGATGCACCGC
GATGTGAAGCCGCACAACATCGTGGTAGACCATGAAAACAAGAGACTTCG
ACTCATTGACTGGGGTCTCGCCGAGTTTTACTTCCCACACAAGGAGTACA
ATGTTCGTGTTGCTTCTCGGTATTTCAAAGGTCCTGAGCTGCTGGTGGAC
TTGCAAGACTATGACTACTCTCTGGATATATGGTCCCTTGGATGCATGTT
GGCAGGGATGATCTTCCGGAAAGAGCCCTTTTTTCACGGTCATGACAACC
AGGACCAGTTGGTGAAGATTGCGAAGGTTTTGGGGACCAAAGATCTTCAG
GACTATCTGACCAAGTACGGTTTGCAGTTGGACGATAACTTTACGGCTTT
GCTAGGATCCCACCAGAAGAAATCGTGGGAGAGCTTTATCAGGGAGGAAA
CCAGACACTTGGCCACTCCAGACGCGTTGGATTTACTCAGTCTCATGCTG
TTGTATGACCACCAGAAGAGAATCACAGCAAAGGAAGCAATGGCCCATCA
CTTCTTTGCTTCTGTGCGGCAGGCAGAAATGAAAGCTCGTGAGCTTGGGA
GATCTGGAAATGGCACAACTGAAATGGGGTCGGGAAGTGATGCGATGAGT
ATAGTATCGTAG
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