Gcaud3757.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3757.t1
Unique NameGcaud3757.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length145
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1650_length_9296_cov_3.832048contigNODE_1650_length_9296_cov_3.832048:5034..5548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010529641.1
PFAMsNDK
Max annot lvl35493|Streptophyta
KEGG rclassRC00002
KEGG koko:K00940
KEGG ReactionR00124,R00139,R00156,R00330,R00570,R00722,R01137,R01857,R02093,R02326,R02331,R03530,R11894,R11895
KEGG Pathwayko00230,ko00240,ko00983,ko01100,ko01110,ko01130,ko04016,map00230,map00240,map00983,map01100,map01110,map01130,map04016
KEGG ModuleM00049,M00050,M00052,M00053
GOsGO:0003674,GO:0003824,GO:0004550,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006139,GO:0006165,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0008270,GO:0009117,GO:0009132,GO:0009507,GO:0009534,GO:0009536,GO:0009543,GO:0009579,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0019205,GO:0019637,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0034641,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0046939,GO:0050896,GO:0050897,GO:0055086,GO:0070013,GO:0071704,GO:1901360
Evalue1.58e-62
EggNOG OGsCOG0105@1|root,KOG0888@2759|Eukaryota,37HQK@33090|Viridiplantae,3G9AR@35493|Streptophyta,3HVBU@3699|Brassicales
EC2.7.4.6
DescriptionNucleoside diphosphate kinase
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3757Gcaud3757Gracilaria caudata M_176_S67 malegeneNODE_1650_length_9296_cov_3.832048 5034..5548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3757.t1Gcaud3757.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1650_length_9296_cov_3.832048 5034..5548 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3757.t1.stop1Gcaud3757.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1650_length_9296_cov_3.832048 5034..5036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3757.t1.CDS1Gcaud3757.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1650_length_9296_cov_3.832048 5034..5145 -
Gcaud3757.t1.CDS2Gcaud3757.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1650_length_9296_cov_3.832048 5226..5548 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3757.t1.exon1Gcaud3757.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1650_length_9296_cov_3.832048 5034..5145 -
Gcaud3757.t1.exon2Gcaud3757.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1650_length_9296_cov_3.832048 5226..5548 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3757.t1.intron1Gcaud3757.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1650_length_9296_cov_3.832048 5146..5225 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3757.t1.start1Gcaud3757.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1650_length_9296_cov_3.832048 5546..5548 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3757.t1 ID=Gcaud3757.t1|Name=Gcaud3757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=145bp
MLKPDAVQRGLVGDIIARFERRGFKLVALKLVTPSLDMAKKHYYDLAERP
FFPALCRFLSSGPVVAMVFEGEDVIRQGRRMIGATSPLAADPGTIRGDLA
IITGKNIIHGSDSKESAEAEIALWFTPQEINSWSKTDVEAWVYE*
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spliced messenger RNA

>Gcaud3757.t1 ID=Gcaud3757.t1|Name=Gcaud3757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=435bp|location=Sequence derived from alignment at NODE_1650_length_9296_cov_3.832048:5034..5548- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGCCGGACGCGGTGCAACGCGGACTGGTGGGCGACATCATTGC
GCGCTTCGAGAGGCGCGGCTTCAAGCTGGTGGCGCTCAAGCTCGTCACGC
CGTCGCTGGATATGGCGAAGAAGCATTATTATGACCTGGCGGAACGCCCG
TTCTTTCCGGCGCTGTGCCGCTTTCTGAGCAGCGGACCGGTGGTGGCGAT
GGTGTTTGAGGGCGAGGATGTGATTCGACAGGGACGTAGGATGATTGGCG
CCACTAGCCCGCTTGCGGCTGATCCGGGCACCATCCGAGGCGATCTGGCG
ATTATTACTGGCAAGAACATCATACATGGAAGTGACTCGAAGGAGTCGGC
CGAGGCTGAGATCGCGCTGTGGTTCACGCCGCAGGAAATCAACTCTTGGA
GCAAGACCGACGTCGAAGCGTGGGTCTACGAATAA
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protein sequence of Gcaud3757.t1

>Gcaud3757.t1 ID=Gcaud3757.t1|Name=Gcaud3757.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=145bp
MLKPDAVQRGLVGDIIARFERRGFKLVALKLVTPSLDMAKKHYYDLAERP
FFPALCRFLSSGPVVAMVFEGEDVIRQGRRMIGATSPLAADPGTIRGDLA
IITGKNIIHGSDSKESAEAEIALWFTPQEINSWSKTDVEAWVYE*
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mRNA from alignment at NODE_1650_length_9296_cov_3.832048:5034..5548-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3757.t1 ID=Gcaud3757.t1|Name=Gcaud3757.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=515bp|location=Sequence derived from alignment at NODE_1650_length_9296_cov_3.832048:5034..5548- (Gracilaria caudata M_176_S67 male)
ATGCTCAAGCCGGACGCGGTGCAACGCGGACTGGTGGGCGACATCATTGC
GCGCTTCGAGAGGCGCGGCTTCAAGCTGGTGGCGCTCAAGCTCGTCACGC
CGTCGCTGGATATGGCGAAGAAGCATTATTATGACCTGGCGGAACGCCCG
TTCTTTCCGGCGCTGTGCCGCTTTCTGAGCAGCGGACCGGTGGTGGCGAT
GGTGTTTGAGGGCGAGGATGTGATTCGACAGGGACGTAGGATGATTGGCG
CCACTAGCCCGCTTGCGGCTGATCCGGGCACCATCCGAGGCGATCTGGCG
ATTATTACTGGCAAGAACATCATGTACGTGGGTGTGTGTTTCTTCGTTTC
CTTTTGTGTGGTGCTGACTGTCGTGCTTTTTTGTGTGTGTGTGCTGTGCG
TAGACATGGAAGTGACTCGAAGGAGTCGGCCGAGGCTGAGATCGCGCTGT
GGTTCACGCCGCAGGAAATCAACTCTTGGAGCAAGACCGACGTCGAAGCG
TGGGTCTACGAATAA
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Coding sequence (CDS) from alignment at NODE_1650_length_9296_cov_3.832048:5034..5548-

>Gcaud3757.t1 ID=Gcaud3757.t1|Name=Gcaud3757.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=435bp|location=Sequence derived from alignment at NODE_1650_length_9296_cov_3.832048:5034..5548- (Gracilaria caudata M_176_S67 male)
ATGCTCAAGCCGGACGCGGTGCAACGCGGACTGGTGGGCGACATCATTGC
GCGCTTCGAGAGGCGCGGCTTCAAGCTGGTGGCGCTCAAGCTCGTCACGC
CGTCGCTGGATATGGCGAAGAAGCATTATTATGACCTGGCGGAACGCCCG
TTCTTTCCGGCGCTGTGCCGCTTTCTGAGCAGCGGACCGGTGGTGGCGAT
GGTGTTTGAGGGCGAGGATGTGATTCGACAGGGACGTAGGATGATTGGCG
CCACTAGCCCGCTTGCGGCTGATCCGGGCACCATCCGAGGCGATCTGGCG
ATTATTACTGGCAAGAACATCATACATGGAAGTGACTCGAAGGAGTCGGC
CGAGGCTGAGATCGCGCTGTGGTTCACGCCGCAGGAAATCAACTCTTGGA
GCAAGACCGACGTCGAAGCGTGGGTCTACGAATAA
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