Gcaud3756.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3756.t1
Unique Name	Gcaud3756.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	238

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1650_length_9296_cov_3.832048	contig	NODE_1650_length_9296_cov_3.832048:615..1328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1007104.SUS17_2654
PFAMs	2OG-FeII_Oxy_3
Max annot lvl	204457\|Sphingomonadales
KEGG rclass	RC00478
KEGG ko	ko:K00472
KEGG Reaction	R01252
KEGG Pathway	ko00330,ko01100,map00330,map01100
Evalue	1e-06
EggNOG OGs	COG3751@1\|root,COG3751@2\|Bacteria,1NG7K@1224\|Proteobacteria,2U773@28211\|Alphaproteobacteria,2K1IN@204457\|Sphingomonadales
EC	1.14.11.2
Description	Prolyl 4-hydroxylase alpha subunit homologues.
COG category	O
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3756	Gcaud3756	Gracilaria caudata M_176_S67 male	gene	NODE_1650_length_9296_cov_3.832048 615..1328 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3756.t1.start1	Gcaud3756.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1650_length_9296_cov_3.832048 615..617 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3756.t1.CDS1	Gcaud3756.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1650_length_9296_cov_3.832048 615..1328 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3756.t1.exon1	Gcaud3756.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1650_length_9296_cov_3.832048 615..1328 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3756.t1.stop1	Gcaud3756.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1650_length_9296_cov_3.832048 1326..1328 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3756.t1	Gcaud3756.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1650_length_9296_cov_3.832048 615..1328 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+
coding sequence from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+

mRNA sequence

>Gcaud3756.t1 ID=Gcaud3756.t1|Name=Gcaud3756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=238bp
MALPDNPTLQRSVAQWGLNIDPHNHFSSISPLNLQPPLLRVPNLLTPVQC
EALIAAQSANMSESQLYLNYRLNSDSRSQSCGFRSNVAHDEPALQPVLEQ
TQKVLGFTDRSFVFAEQLWTRPTRRTVVIRDATTVRYERGEGVPAHVDGK
DCTVLICLREPNRGGRTIFPKDGVYVEQTQGTALIYHSKEKLLHFAEDVE
EGTKWVLQLLIDFTVRSDEPDVHVDYATGQVRVASCA*

spliced messenger RNA

>Gcaud3756.t1 ID=Gcaud3756.t1|Name=Gcaud3756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTACCAGACAATCCCACTCTTCAACGCAGCGTGGCGCAATGGGG
GCTCAACATCGATCCACACAACCATTTCAGCTCAATTTCCCCTCTCAACC
TTCAACCTCCACTGCTACGCGTGCCCAACCTGCTCACACCAGTTCAGTGT
GAGGCACTGATTGCAGCACAGAGTGCCAATATGTCTGAGTCACAACTATA
TCTCAACTATCGTCTCAATTCCGATTCGCGTTCTCAAAGCTGTGGCTTTC
GCTCCAACGTTGCGCATGATGAGCCGGCACTTCAACCTGTATTGGAACAG
ACTCAGAAAGTGCTCGGCTTTACCGACCGTTCGTTTGTGTTCGCGGAACA
GCTTTGGACCCGTCCAACGAGACGTACGGTTGTGATTCGTGATGCTACTA
CGGTGCGCTATGAACGGGGAGAGGGCGTTCCGGCTCACGTCGATGGGAAG
GATTGCACTGTACTTATTTGTCTGCGGGAACCCAATCGCGGAGGACGGAC
AATCTTCCCAAAGGATGGTGTGTATGTTGAACAAACACAGGGTACTGCTT
TGATCTACCATAGCAAGGAGAAGTTGTTGCACTTTGCTGAGGATGTTGAG
GAAGGTACAAAATGGGTTCTCCAACTCTTGATTGACTTTACTGTGCGCTC
GGATGAGCCGGATGTGCATGTGGATTATGCCACAGGTCAGGTTCGAGTAG
CTTCGTGTGCATAG

protein sequence of Gcaud3756.t1

>Gcaud3756.t1 ID=Gcaud3756.t1|Name=Gcaud3756.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MALPDNPTLQRSVAQWGLNIDPHNHFSSISPLNLQPPLLRVPNLLTPVQC
EALIAAQSANMSESQLYLNYRLNSDSRSQSCGFRSNVAHDEPALQPVLEQ
TQKVLGFTDRSFVFAEQLWTRPTRRTVVIRDATTVRYERGEGVPAHVDGK
DCTVLICLREPNRGGRTIFPKDGVYVEQTQGTALIYHSKEKLLHFAEDVE
EGTKWVLQLLIDFTVRSDEPDVHVDYATGQVRVASCA*

mRNA from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3756.t1 ID=Gcaud3756.t1|Name=Gcaud3756.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTACCAGACAATCCCACTCTTCAACGCAGCGTGGCGCAATGGGG
GCTCAACATCGATCCACACAACCATTTCAGCTCAATTTCCCCTCTCAACC
TTCAACCTCCACTGCTACGCGTGCCCAACCTGCTCACACCAGTTCAGTGT
GAGGCACTGATTGCAGCACAGAGTGCCAATATGTCTGAGTCACAACTATA
TCTCAACTATCGTCTCAATTCCGATTCGCGTTCTCAAAGCTGTGGCTTTC
GCTCCAACGTTGCGCATGATGAGCCGGCACTTCAACCTGTATTGGAACAG
ACTCAGAAAGTGCTCGGCTTTACCGACCGTTCGTTTGTGTTCGCGGAACA
GCTTTGGACCCGTCCAACGAGACGTACGGTTGTGATTCGTGATGCTACTA
CGGTGCGCTATGAACGGGGAGAGGGCGTTCCGGCTCACGTCGATGGGAAG
GATTGCACTGTACTTATTTGTCTGCGGGAACCCAATCGCGGAGGACGGAC
AATCTTCCCAAAGGATGGTGTGTATGTTGAACAAACACAGGGTACTGCTT
TGATCTACCATAGCAAGGAGAAGTTGTTGCACTTTGCTGAGGATGTTGAG
GAAGGTACAAAATGGGTTCTCCAACTCTTGATTGACTTTACTGTGCGCTC
GGATGAGCCGGATGTGCATGTGGATTATGCCACAGGTCAGGTTCGAGTAG
CTTCGTGTGCATAG

Coding sequence (CDS) from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+

>Gcaud3756.t1 ID=Gcaud3756.t1|Name=Gcaud3756.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=714bp|location=Sequence derived from alignment at NODE_1650_length_9296_cov_3.832048:615..1328+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTACCAGACAATCCCACTCTTCAACGCAGCGTGGCGCAATGGGG
GCTCAACATCGATCCACACAACCATTTCAGCTCAATTTCCCCTCTCAACC
TTCAACCTCCACTGCTACGCGTGCCCAACCTGCTCACACCAGTTCAGTGT
GAGGCACTGATTGCAGCACAGAGTGCCAATATGTCTGAGTCACAACTATA
TCTCAACTATCGTCTCAATTCCGATTCGCGTTCTCAAAGCTGTGGCTTTC
GCTCCAACGTTGCGCATGATGAGCCGGCACTTCAACCTGTATTGGAACAG
ACTCAGAAAGTGCTCGGCTTTACCGACCGTTCGTTTGTGTTCGCGGAACA
GCTTTGGACCCGTCCAACGAGACGTACGGTTGTGATTCGTGATGCTACTA
CGGTGCGCTATGAACGGGGAGAGGGCGTTCCGGCTCACGTCGATGGGAAG
GATTGCACTGTACTTATTTGTCTGCGGGAACCCAATCGCGGAGGACGGAC
AATCTTCCCAAAGGATGGTGTGTATGTTGAACAAACACAGGGTACTGCTT
TGATCTACCATAGCAAGGAGAAGTTGTTGCACTTTGCTGAGGATGTTGAG
GAAGGTACAAAATGGGTTCTCCAACTCTTGATTGACTTTACTGTGCGCTC
GGATGAGCCGGATGTGCATGTGGATTATGCCACAGGTCAGGTTCGAGTAG
CTTCGTGTGCATAG