Gcaud3743.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3743.t1
Unique NameGcaud3743.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_341_length_29305_cov_4.478264contigNODE_341_length_29305_cov_4.478264:13316..14185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog583355.Caka_0059
PFAMsBig_4,Glyco_hydro_16,RicinB_lectin_2
Max annot lvl2|Bacteria
KEGG koko:K20846
Evalue2.03e-33
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria
EC3.2.1.83
Descriptionxyloglucan:xyloglucosyl transferase activity
COG categoryG
CAZyGH16
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3743Gcaud3743Gracilaria caudata M_176_S67 malegeneNODE_341_length_29305_cov_4.478264 13316..14185 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3743.t1.stop1Gcaud3743.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_341_length_29305_cov_4.478264 13316..13318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3743.t1.CDS1Gcaud3743.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_341_length_29305_cov_4.478264 13316..14185 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3743.t1.exon1Gcaud3743.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_341_length_29305_cov_4.478264 13316..14185 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3743.t1.start1Gcaud3743.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_341_length_29305_cov_4.478264 14183..14185 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3743.t1Gcaud3743.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_341_length_29305_cov_4.478264 13316..14185 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3743.t1 ID=Gcaud3743.t1|Name=Gcaud3743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=290bp
MTVFRDVPPLIYDPSKTDTNTPLPYYLQRELPHNMKWVKDWGMSDEFDSY
PVEHWYYDNKWVRYNPRWVGRHPSFFSHENVYVRDNRLWLQSTERPPSNM
DRQRMNGRLEGNSWKYSTSFIRTAEQRRYGYFEIACKLMDSNVSCAFWFI
NNRDREIDVFEYSTSGKNYDIYDQSRVPFKQKFNMNTVIYSGPNGVNILS
NPLKIDVGRDLSKEIVKVGFLWKPDVLVWYLNDREVRRLPNHDFHIPLYL
QLDSEVFPNWFGLPGEYGPKKLPNSWQVFYVRSYQMQSK*
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spliced messenger RNA

>Gcaud3743.t1 ID=Gcaud3743.t1|Name=Gcaud3743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_341_length_29305_cov_4.478264:13316..14185- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTCTTCAGGGATGTTCCCCCCCTCATATATGACCCCTCCAAAAC
AGACACCAACACGCCACTCCCCTATTATCTCCAGCGAGAGCTCCCCCACA
ACATGAAATGGGTCAAGGATTGGGGAATGTCTGATGAGTTCGATTCCTAT
CCCGTCGAACACTGGTACTACGATAACAAGTGGGTTCGATACAATCCGCG
CTGGGTTGGAAGACACCCAAGCTTCTTCTCTCATGAAAACGTGTATGTGC
GCGACAACCGTCTCTGGCTCCAGTCAACGGAAAGACCGCCGTCCAACATG
GATCGTCAGAGGATGAATGGTCGTCTAGAAGGCAACAGCTGGAAGTACTC
CACCAGTTTCATCCGTACTGCAGAGCAACGCCGGTACGGGTATTTCGAAA
TCGCGTGCAAGCTGATGGACAGCAATGTGAGCTGCGCTTTCTGGTTCATC
AACAATCGTGACAGAGAGATTGATGTATTCGAATACTCTACCTCCGGAAA
GAACTATGACATCTACGACCAATCACGCGTGCCGTTCAAGCAGAAGTTCA
ACATGAACACCGTGATATATTCTGGGCCAAACGGAGTTAATATTCTTTCC
AACCCTTTGAAGATCGACGTGGGACGAGATCTGTCCAAGGAAATCGTGAA
GGTTGGATTCTTGTGGAAACCAGACGTGCTGGTTTGGTATTTGAACGATC
GAGAAGTTCGCCGCCTCCCAAACCACGACTTTCATATCCCTCTTTACTTG
CAACTTGATTCGGAGGTATTTCCGAACTGGTTTGGGCTACCTGGAGAATA
CGGACCGAAGAAACTTCCGAATTCGTGGCAAGTGTTCTACGTCCGCAGCT
ATCAAATGCAAAGCAAGTAG
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protein sequence of Gcaud3743.t1

>Gcaud3743.t1 ID=Gcaud3743.t1|Name=Gcaud3743.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=290bp
MTVFRDVPPLIYDPSKTDTNTPLPYYLQRELPHNMKWVKDWGMSDEFDSY
PVEHWYYDNKWVRYNPRWVGRHPSFFSHENVYVRDNRLWLQSTERPPSNM
DRQRMNGRLEGNSWKYSTSFIRTAEQRRYGYFEIACKLMDSNVSCAFWFI
NNRDREIDVFEYSTSGKNYDIYDQSRVPFKQKFNMNTVIYSGPNGVNILS
NPLKIDVGRDLSKEIVKVGFLWKPDVLVWYLNDREVRRLPNHDFHIPLYL
QLDSEVFPNWFGLPGEYGPKKLPNSWQVFYVRSYQMQSK*
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mRNA from alignment at NODE_341_length_29305_cov_4.478264:13316..14185-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3743.t1 ID=Gcaud3743.t1|Name=Gcaud3743.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=870bp|location=Sequence derived from alignment at NODE_341_length_29305_cov_4.478264:13316..14185- (Gracilaria caudata M_176_S67 male)
ATGACTGTCTTCAGGGATGTTCCCCCCCTCATATATGACCCCTCCAAAAC
AGACACCAACACGCCACTCCCCTATTATCTCCAGCGAGAGCTCCCCCACA
ACATGAAATGGGTCAAGGATTGGGGAATGTCTGATGAGTTCGATTCCTAT
CCCGTCGAACACTGGTACTACGATAACAAGTGGGTTCGATACAATCCGCG
CTGGGTTGGAAGACACCCAAGCTTCTTCTCTCATGAAAACGTGTATGTGC
GCGACAACCGTCTCTGGCTCCAGTCAACGGAAAGACCGCCGTCCAACATG
GATCGTCAGAGGATGAATGGTCGTCTAGAAGGCAACAGCTGGAAGTACTC
CACCAGTTTCATCCGTACTGCAGAGCAACGCCGGTACGGGTATTTCGAAA
TCGCGTGCAAGCTGATGGACAGCAATGTGAGCTGCGCTTTCTGGTTCATC
AACAATCGTGACAGAGAGATTGATGTATTCGAATACTCTACCTCCGGAAA
GAACTATGACATCTACGACCAATCACGCGTGCCGTTCAAGCAGAAGTTCA
ACATGAACACCGTGATATATTCTGGGCCAAACGGAGTTAATATTCTTTCC
AACCCTTTGAAGATCGACGTGGGACGAGATCTGTCCAAGGAAATCGTGAA
GGTTGGATTCTTGTGGAAACCAGACGTGCTGGTTTGGTATTTGAACGATC
GAGAAGTTCGCCGCCTCCCAAACCACGACTTTCATATCCCTCTTTACTTG
CAACTTGATTCGGAGGTATTTCCGAACTGGTTTGGGCTACCTGGAGAATA
CGGACCGAAGAAACTTCCGAATTCGTGGCAAGTGTTCTACGTCCGCAGCT
ATCAAATGCAAAGCAAGTAG
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Coding sequence (CDS) from alignment at NODE_341_length_29305_cov_4.478264:13316..14185-

>Gcaud3743.t1 ID=Gcaud3743.t1|Name=Gcaud3743.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=870bp|location=Sequence derived from alignment at NODE_341_length_29305_cov_4.478264:13316..14185- (Gracilaria caudata M_176_S67 male)
ATGACTGTCTTCAGGGATGTTCCCCCCCTCATATATGACCCCTCCAAAAC
AGACACCAACACGCCACTCCCCTATTATCTCCAGCGAGAGCTCCCCCACA
ACATGAAATGGGTCAAGGATTGGGGAATGTCTGATGAGTTCGATTCCTAT
CCCGTCGAACACTGGTACTACGATAACAAGTGGGTTCGATACAATCCGCG
CTGGGTTGGAAGACACCCAAGCTTCTTCTCTCATGAAAACGTGTATGTGC
GCGACAACCGTCTCTGGCTCCAGTCAACGGAAAGACCGCCGTCCAACATG
GATCGTCAGAGGATGAATGGTCGTCTAGAAGGCAACAGCTGGAAGTACTC
CACCAGTTTCATCCGTACTGCAGAGCAACGCCGGTACGGGTATTTCGAAA
TCGCGTGCAAGCTGATGGACAGCAATGTGAGCTGCGCTTTCTGGTTCATC
AACAATCGTGACAGAGAGATTGATGTATTCGAATACTCTACCTCCGGAAA
GAACTATGACATCTACGACCAATCACGCGTGCCGTTCAAGCAGAAGTTCA
ACATGAACACCGTGATATATTCTGGGCCAAACGGAGTTAATATTCTTTCC
AACCCTTTGAAGATCGACGTGGGACGAGATCTGTCCAAGGAAATCGTGAA
GGTTGGATTCTTGTGGAAACCAGACGTGCTGGTTTGGTATTTGAACGATC
GAGAAGTTCGCCGCCTCCCAAACCACGACTTTCATATCCCTCTTTACTTG
CAACTTGATTCGGAGGTATTTCCGAACTGGTTTGGGCTACCTGGAGAATA
CGGACCGAAGAAACTTCCGAATTCGTGGCAAGTGTTCTACGTCCGCAGCT
ATCAAATGCAAAGCAAGTAG
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