Gcaud3732.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3732.t1
Unique Name	Gcaud3732.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	370

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1775_length_8440_cov_3.859983	contig	NODE_1775_length_8440_cov_3.859983:2731..3840 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3732	Gcaud3732	Gracilaria caudata M_176_S67 male	gene	NODE_1775_length_8440_cov_3.859983 2731..3840 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3732.t1.start1	Gcaud3732.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1775_length_8440_cov_3.859983 2731..2733 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3732.t1.CDS1	Gcaud3732.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1775_length_8440_cov_3.859983 2731..3840 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3732.t1.exon1	Gcaud3732.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1775_length_8440_cov_3.859983 2731..3840 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3732.t1.stop1	Gcaud3732.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1775_length_8440_cov_3.859983 3838..3840 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3732.t1	Gcaud3732.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1775_length_8440_cov_3.859983 2731..3840 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+
coding sequence from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+

mRNA sequence

>Gcaud3732.t1 ID=Gcaud3732.t1|Name=Gcaud3732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=370bp
MSTKGLVDKWCINFLALIALTGGGQRPQAYVRLQCPPWAVLEECLGDELQ
NPRGLFPMRTYKEKTPRALDVPWVNFPRLIMPYIAFHMDAVRPIILKLRK
LPVTASFRRNKPLLLHSRTGEYLSSADVSKSIKTFMRSVDSTLKTVTAMT
LRSSFATAMLHDYRRGKFLNKKGKILEEETFLGLVAKQMNTSVEQLRNTY
MASYSSDYKEVCALMTKHFCMIMGEDSDDECEDTHNSSQGSSKRGGGYRF
GDEENETSAGEQLDEDTNDEEEDEDKPDEDQDQGEDDEQQQQHEGEDEDE
EDDDPLGTGVELFGVDEDSEGSERKGDGREEDEIPETSEEDEVVVRRKRR
RSTNRNVNMQRASKSRRSR*

spliced messenger RNA

>Gcaud3732.t1 ID=Gcaud3732.t1|Name=Gcaud3732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCAAAGGGCTTGTCGACAAGTGGTGTATTAACTTTCTTGCGTT
GATCGCGCTGACGGGAGGTGGGCAGAGACCGCAAGCGTATGTGCGACTGC
AATGTCCACCATGGGCAGTTCTGGAGGAGTGCCTTGGAGACGAGTTGCAG
AATCCGCGTGGTCTGTTTCCGATGAGGACCTACAAGGAGAAGACACCACG
GGCGCTTGACGTGCCATGGGTTAACTTTCCTCGACTGATTATGCCGTATA
TTGCGTTTCATATGGATGCCGTGCGTCCTATCATTTTGAAGCTGCGTAAG
TTGCCGGTAACCGCAAGTTTCCGCCGTAATAAGCCACTTCTACTGCACTC
GCGCACGGGGGAATATCTGTCATCGGCCGATGTTTCCAAGTCGATCAAGA
CGTTCATGCGCAGCGTGGACTCCACGCTGAAGACTGTCACCGCCATGACT
TTGCGATCGAGTTTTGCCACAGCGATGTTACATGATTACCGCAGAGGCAA
GTTCTTGAATAAGAAGGGCAAGATTCTGGAGGAGGAGACGTTTTTGGGTC
TTGTGGCAAAGCAGATGAACACTTCGGTGGAGCAACTTCGCAACACGTAT
ATGGCGTCGTACAGCAGTGACTATAAGGAAGTATGTGCTCTGATGACGAA
GCACTTTTGCATGATTATGGGTGAGGACTCAGATGACGAGTGTGAGGACA
CGCATAATAGCTCACAGGGTTCTTCGAAGAGAGGTGGAGGATATAGATTC
GGCGACGAAGAAAATGAGACGAGTGCTGGTGAACAACTTGATGAAGACAC
GAACGACGAAGAGGAGGATGAAGACAAGCCggacgaggaccaggaccagg
gcgaggatgacgagcagcagcagcagcatgagggagaggatgaagacgag
gaagatgatgaTCCGTTAGGAACGGGCGTGGAATTGTTTGGTGTTGACGA
AGACAGCGAAGGTTCTGAACGTAAAGGTGATGGGCGTGAAGAAGACGAAA
TTCCGGAGACAAGCGAGGAGGATGAGGTTGTTGTACGTAGGAAGAGGAGA
AGGAGCACTAATAGGAATGTGAACATGCAGAGGGCGTCGAAAAGCAGGAG
GAGCCGTTAA

protein sequence of Gcaud3732.t1

>Gcaud3732.t1 ID=Gcaud3732.t1|Name=Gcaud3732.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=370bp
MSTKGLVDKWCINFLALIALTGGGQRPQAYVRLQCPPWAVLEECLGDELQ
NPRGLFPMRTYKEKTPRALDVPWVNFPRLIMPYIAFHMDAVRPIILKLRK
LPVTASFRRNKPLLLHSRTGEYLSSADVSKSIKTFMRSVDSTLKTVTAMT
LRSSFATAMLHDYRRGKFLNKKGKILEEETFLGLVAKQMNTSVEQLRNTY
MASYSSDYKEVCALMTKHFCMIMGEDSDDECEDTHNSSQGSSKRGGGYRF
GDEENETSAGEQLDEDTNDEEEDEDKPDEDQDQGEDDEQQQQHEGEDEDE
EDDDPLGTGVELFGVDEDSEGSERKGDGREEDEIPETSEEDEVVVRRKRR
RSTNRNVNMQRASKSRRSR*

mRNA from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3732.t1 ID=Gcaud3732.t1|Name=Gcaud3732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCAAAGGGCTTGTCGACAAGTGGTGTATTAACTTTCTTGCGTT
GATCGCGCTGACGGGAGGTGGGCAGAGACCGCAAGCGTATGTGCGACTGC
AATGTCCACCATGGGCAGTTCTGGAGGAGTGCCTTGGAGACGAGTTGCAG
AATCCGCGTGGTCTGTTTCCGATGAGGACCTACAAGGAGAAGACACCACG
GGCGCTTGACGTGCCATGGGTTAACTTTCCTCGACTGATTATGCCGTATA
TTGCGTTTCATATGGATGCCGTGCGTCCTATCATTTTGAAGCTGCGTAAG
TTGCCGGTAACCGCAAGTTTCCGCCGTAATAAGCCACTTCTACTGCACTC
GCGCACGGGGGAATATCTGTCATCGGCCGATGTTTCCAAGTCGATCAAGA
CGTTCATGCGCAGCGTGGACTCCACGCTGAAGACTGTCACCGCCATGACT
TTGCGATCGAGTTTTGCCACAGCGATGTTACATGATTACCGCAGAGGCAA
GTTCTTGAATAAGAAGGGCAAGATTCTGGAGGAGGAGACGTTTTTGGGTC
TTGTGGCAAAGCAGATGAACACTTCGGTGGAGCAACTTCGCAACACGTAT
ATGGCGTCGTACAGCAGTGACTATAAGGAAGTATGTGCTCTGATGACGAA
GCACTTTTGCATGATTATGGGTGAGGACTCAGATGACGAGTGTGAGGACA
CGCATAATAGCTCACAGGGTTCTTCGAAGAGAGGTGGAGGATATAGATTC
GGCGACGAAGAAAATGAGACGAGTGCTGGTGAACAACTTGATGAAGACAC
GAACGACGAAGAGGAGGATGAAGACAAGCCggacgaggaccaggaccagg
gcgaggatgacgagcagcagcagcagcatgagggagaggatgaagacgag
gaagatgatgaTCCGTTAGGAACGGGCGTGGAATTGTTTGGTGTTGACGA
AGACAGCGAAGGTTCTGAACGTAAAGGTGATGGGCGTGAAGAAGACGAAA
TTCCGGAGACAAGCGAGGAGGATGAGGTTGTTGTACGTAGGAAGAGGAGA
AGGAGCACTAATAGGAATGTGAACATGCAGAGGGCGTCGAAAAGCAGGAG
GAGCCGTTAA

Coding sequence (CDS) from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+

>Gcaud3732.t1 ID=Gcaud3732.t1|Name=Gcaud3732.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1110bp|location=Sequence derived from alignment at NODE_1775_length_8440_cov_3.859983:2731..3840+ (Gracilaria caudata M_176_S67 male)
ATGAGCACCAAAGGGCTTGTCGACAAGTGGTGTATTAACTTTCTTGCGTT
GATCGCGCTGACGGGAGGTGGGCAGAGACCGCAAGCGTATGTGCGACTGC
AATGTCCACCATGGGCAGTTCTGGAGGAGTGCCTTGGAGACGAGTTGCAG
AATCCGCGTGGTCTGTTTCCGATGAGGACCTACAAGGAGAAGACACCACG
GGCGCTTGACGTGCCATGGGTTAACTTTCCTCGACTGATTATGCCGTATA
TTGCGTTTCATATGGATGCCGTGCGTCCTATCATTTTGAAGCTGCGTAAG
TTGCCGGTAACCGCAAGTTTCCGCCGTAATAAGCCACTTCTACTGCACTC
GCGCACGGGGGAATATCTGTCATCGGCCGATGTTTCCAAGTCGATCAAGA
CGTTCATGCGCAGCGTGGACTCCACGCTGAAGACTGTCACCGCCATGACT
TTGCGATCGAGTTTTGCCACAGCGATGTTACATGATTACCGCAGAGGCAA
GTTCTTGAATAAGAAGGGCAAGATTCTGGAGGAGGAGACGTTTTTGGGTC
TTGTGGCAAAGCAGATGAACACTTCGGTGGAGCAACTTCGCAACACGTAT
ATGGCGTCGTACAGCAGTGACTATAAGGAAGTATGTGCTCTGATGACGAA
GCACTTTTGCATGATTATGGGTGAGGACTCAGATGACGAGTGTGAGGACA
CGCATAATAGCTCACAGGGTTCTTCGAAGAGAGGTGGAGGATATAGATTC
GGCGACGAAGAAAATGAGACGAGTGCTGGTGAACAACTTGATGAAGACAC
GAACGACGAAGAGGAGGATGAAGACAAGCCggacgaggaccaggaccagg
gcgaggatgacgagcagcagcagcagcatgagggagaggatgaagacgag
gaagatgatgaTCCGTTAGGAACGGGCGTGGAATTGTTTGGTGTTGACGA
AGACAGCGAAGGTTCTGAACGTAAAGGTGATGGGCGTGAAGAAGACGAAA
TTCCGGAGACAAGCGAGGAGGATGAGGTTGTTGTACGTAGGAAGAGGAGA
AGGAGCACTAATAGGAATGTGAACATGCAGAGGGCGTCGAAAAGCAGGAG
GAGCCGTTAA