Gcaud3731.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3731.t1
Unique Name	Gcaud3731.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	823

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1775_length_8440_cov_3.859983	contig	NODE_1775_length_8440_cov_3.859983:231..2699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3731	Gcaud3731	Gracilaria caudata M_176_S67 male	gene	NODE_1775_length_8440_cov_3.859983 231..2699 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3731.t1.start1	Gcaud3731.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1775_length_8440_cov_3.859983 231..233 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3731.t1.CDS1	Gcaud3731.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1775_length_8440_cov_3.859983 231..2699 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3731.t1.exon1	Gcaud3731.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1775_length_8440_cov_3.859983 231..2699 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3731.t1.stop1	Gcaud3731.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1775_length_8440_cov_3.859983 2697..2699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3731.t1	Gcaud3731.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1775_length_8440_cov_3.859983 231..2699 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+
coding sequence from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+

mRNA sequence

>Gcaud3731.t1 ID=Gcaud3731.t1|Name=Gcaud3731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=823bp
MSDPLFNCIFGEEGVEKVNGRRAARRKNVGCAPAKASLKGGGVHMSSRLG
GSMRPVSVKVHNDGRTVNGEVQGDSIECSDESELGDIDLFPNTQALQGSR
KALKGVSGVRKSQSHVVRKVMNDVTNEKKSVKGSEIVARSKYAEKKKTPV
YDLTKEDGDTGAENNDLEGGNGGGRRRILDYAEKTPLLNKKKLSFSADVQ
PKQKGTKQSSNIGGGALPTLKKKLSFSADVEAKQKGTKQSTDVGGALQMF
NVKGADFGPSPVYSSDEDELKKERNATGMDPVVTNQKDMCLKTEPEVDIG
AELAPLDCDEKFEDYVSGMKKPKHRAKDVSAGTGVGERQQRMIGKENGDG
CGGVDIAGQKRMLLDRPGEEDGEQEEQEKEAKVGGCKQENGMKVGSGDEE
DSEEDDEDYVVDEDVDEGDDDADEDEFSDASSVIDLINGIPEQNARDRAC
SSTVKMLVRRGHRDGGGRGGREGFVGDEGDHDDDDYDSESGDGLGKKKKK
KKEKEHEEEEVRSIRIMDLDEFLEEQETELKEMGDEFVSRRRLDVFSGVS
QKVKNLKKKKNMMKRKMKKNIGEGSGGDEEGFDFSLERAERAVKLSPKEL
WTRMILEAELRYPDYFRSTNAVLKDFGCKMGKGSIAYPGLKVTPENCADL
NEVYMLRFKMKELMNTRGSGTFQGLKSIVGQFMRWAIAAGKLAKSDGWKP
MAVFRLFREERLVRCFVNYFIRVASFGTVASKCNALRTMCQYANVRMTDQ
ENRNRVARVDMYLKTSFNAAKGAAREDYRKKQSAEERIRNQSIVTREQIE
EGIRVARGKLNDIIETFTAQGW*

spliced messenger RNA

>Gcaud3731.t1 ID=Gcaud3731.t1|Name=Gcaud3731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGATCCGTTATTCAACTGCATATTCGGAGAAGAGGGTGTGGAGAA
AGTGAATGGGAGACGTGCGGCTCGGCGTAAAAATGTTGGTTGTGCTCCGG
CCAAAGCTTCACTGAAAGGTGGTGGGGTGCATATGTCCTCCCGTCTGGGG
GGAAGCATGCGCCCGGTGTCGGTGAAGGTGCATAACGATGGTCGCACGGT
CAATGGCGAAGTGCAGGGAGACAGTATCGAGTGCAGTGACGAAAGCGAAC
TTGGCGACATTGATTTGTTCCCAAACACACAGGCGCTACAGGGCTCCCGA
AAGGCGCTGAAGGGGGTATCAGGGGTGAGAAAGAGCCAGAGCCACGTGGT
GCGCAAAGTGATGAACGATGTGACGAACGAGAAGAAATCGGTGAAGGGGA
GTGAGATTGTGGCACGTTCCAAATATGCAGAGAAGAAGAAGACGCCGGTG
TACGATCTAACCAAAGAAGATGGGGATACAGGCGCTGAGAATAACGACCT
TGAGGGCGGCAACGGCGGCGGTCGCCGTCGCATCTTAGACTATGCAGAGA
AGACGCCGCTGCTGAACAAGAAGAAGCTGTCGTTTTCAGCTGACGTCCAG
CCGAAGCAGAAGGGAACGAAGCAAAGCAGTAACATTGGGGGTGGTGCTTT
ACCGACGTTGAAGAAGAAGCTGTCGTTTTCCGCCGATGTCGAGGCCAAGC
AGAAAGGAACGAAGCAAAGCACTGACGTTGGCGGTGCTTTACAGATGTTT
AACGTGAAAGGGGCAGATTTTGGACCTTCCCCTGTGTACAGTAGTGACGA
AGACGAACTTAAGAAGGAACGAAATGCGACAGGTATGGATCCCGTGGTAA
CCAACCAGAAGGATATGTGTCTCAAAACAGAACCGGAGGTAGATATTGGG
GCTGAGTTGGCGCCGTTGGACTGTGACGAAAAGTTCGAAGACTACGTATC
GGGGATGAAGAAACCCAAACACAGAGCGAAAGATGTGAGTGCTGGGACGG
GAGTGGGAGAGCGCCAGCAGAGGATGATTGGAAAAGAGAATGGGGATGGA
TGTGGCGGTGTTGATATTGCTGGGCAGAAACGCATGTTGCTGGACCGTCC
TggagaagaagacggagaacaagaggagcaagaaaaggaAGCGAAGGTTG
GTGGGTGCAAGCAGGAGAATGGCATGAAAGTTGGGAGTGGGgatgaagaa
gatagtgaagaggatgacgaagattatgtggtggatgaagatgtagatga
aggtgacgatgacgctgatgaagatgaGTTCAGTGACGCCAGCAGTGTTA
TTGATCTCATCAATGGCATCCCAGAGCAAAATGCTCGTGACAGGGCGTGT
TCGAGCACTGTGAAGATGTTGGTGCGGAGGGGCCACCGTGACGGCGGAGG
CCGTGGTGGACGAGAAGGTTTCGTGGGtgatgaaggagatcatgatgatg
atgattatgatAGCGAGTCAGGCGATGGACTGGGAaagaagaagaagaag
aagaaggagaaggagcacgaagaagaggaagtgagaagtataagGATCAT
GGACTTGGATGAATTTCTTGAGGAGCAAGAGACGGAATTGAAGGAAATGG
GTGATGAATTCGTGTCTCGAAGACGGCTGGATGTGTTCAGTGGGGTTTCG
Cagaaggtgaagaacctgaagaagaagaagaatatgatgaaaaggaagat
gaagaagaaCATTGGGGAAGGCAGCGGAGGTGATGAGGAGGGATTTGATT
TCAGTTTGGAGCGAGCGGAGAGGGCTGTGAAGTTGTCCCCTAAAGAGCTT
TGGACGCGGATGATACTGGAGGCTGAGCTGCGCTATCCTGACTATTTCCG
TAGCACCAACGCTGTTCTCAAGGATTTCGGGTGTAAGATGGGGAAAGGGA
GCATTGCGTATCCTGGGTTGAAGGTAACACCAGAGAACTGTGCGGATCTC
AACGAGGTGTACATGTTGCGGTTCAAGATGAAGGAATTGATGAACACGAG
GGGGAGCGGGACGTTTCAGGGATTGAAGTCAATTGTAGGCCAGTTTATGA
GGTGGGCCATTGCGGCGGGGAAGCTGGCAAAGTCGGATGGCTGGAAGCCG
ATGGCAGTGTTCCGATTGTTCCGGGAGGAAAGGCTTGTACGATGTTTTGT
CAATTACTTTATACGCGTCGCGTCGTTTGGGACTGTGGCAAGCAAGTGCA
ATGCGCTTCGCACCATGTGCCAATATGCGAACGTGAGAATGACTGATCAG
GAGAATCGGAACCGTGTGGCGCGTGTGGACATGTACCTGAAGACCTCCTT
CAACGCTGCGAAGGGTGCTGCGAGAGAAGACTACCGGAAGAAGCAGAGTG
CGGAGGAACGGATAAGGAATCAGAGCATTGTGACACGGGAGCAGATTGAG
GAAGGGATCCGAGTGGCGCGAGGGAAGCTCAACGACATCATCGAAACATT
TACAGCCCAAGGTTGGTAA

protein sequence of Gcaud3731.t1

>Gcaud3731.t1 ID=Gcaud3731.t1|Name=Gcaud3731.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=823bp
MSDPLFNCIFGEEGVEKVNGRRAARRKNVGCAPAKASLKGGGVHMSSRLG
GSMRPVSVKVHNDGRTVNGEVQGDSIECSDESELGDIDLFPNTQALQGSR
KALKGVSGVRKSQSHVVRKVMNDVTNEKKSVKGSEIVARSKYAEKKKTPV
YDLTKEDGDTGAENNDLEGGNGGGRRRILDYAEKTPLLNKKKLSFSADVQ
PKQKGTKQSSNIGGGALPTLKKKLSFSADVEAKQKGTKQSTDVGGALQMF
NVKGADFGPSPVYSSDEDELKKERNATGMDPVVTNQKDMCLKTEPEVDIG
AELAPLDCDEKFEDYVSGMKKPKHRAKDVSAGTGVGERQQRMIGKENGDG
CGGVDIAGQKRMLLDRPGEEDGEQEEQEKEAKVGGCKQENGMKVGSGDEE
DSEEDDEDYVVDEDVDEGDDDADEDEFSDASSVIDLINGIPEQNARDRAC
SSTVKMLVRRGHRDGGGRGGREGFVGDEGDHDDDDYDSESGDGLGKKKKK
KKEKEHEEEEVRSIRIMDLDEFLEEQETELKEMGDEFVSRRRLDVFSGVS
QKVKNLKKKKNMMKRKMKKNIGEGSGGDEEGFDFSLERAERAVKLSPKEL
WTRMILEAELRYPDYFRSTNAVLKDFGCKMGKGSIAYPGLKVTPENCADL
NEVYMLRFKMKELMNTRGSGTFQGLKSIVGQFMRWAIAAGKLAKSDGWKP
MAVFRLFREERLVRCFVNYFIRVASFGTVASKCNALRTMCQYANVRMTDQ
ENRNRVARVDMYLKTSFNAAKGAAREDYRKKQSAEERIRNQSIVTREQIE
EGIRVARGKLNDIIETFTAQGW*

mRNA from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3731.t1 ID=Gcaud3731.t1|Name=Gcaud3731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2469bp|location=Sequence derived from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+ (Gracilaria caudata M_176_S67 male)
ATGAGTGATCCGTTATTCAACTGCATATTCGGAGAAGAGGGTGTGGAGAA
AGTGAATGGGAGACGTGCGGCTCGGCGTAAAAATGTTGGTTGTGCTCCGG
CCAAAGCTTCACTGAAAGGTGGTGGGGTGCATATGTCCTCCCGTCTGGGG
GGAAGCATGCGCCCGGTGTCGGTGAAGGTGCATAACGATGGTCGCACGGT
CAATGGCGAAGTGCAGGGAGACAGTATCGAGTGCAGTGACGAAAGCGAAC
TTGGCGACATTGATTTGTTCCCAAACACACAGGCGCTACAGGGCTCCCGA
AAGGCGCTGAAGGGGGTATCAGGGGTGAGAAAGAGCCAGAGCCACGTGGT
GCGCAAAGTGATGAACGATGTGACGAACGAGAAGAAATCGGTGAAGGGGA
GTGAGATTGTGGCACGTTCCAAATATGCAGAGAAGAAGAAGACGCCGGTG
TACGATCTAACCAAAGAAGATGGGGATACAGGCGCTGAGAATAACGACCT
TGAGGGCGGCAACGGCGGCGGTCGCCGTCGCATCTTAGACTATGCAGAGA
AGACGCCGCTGCTGAACAAGAAGAAGCTGTCGTTTTCAGCTGACGTCCAG
CCGAAGCAGAAGGGAACGAAGCAAAGCAGTAACATTGGGGGTGGTGCTTT
ACCGACGTTGAAGAAGAAGCTGTCGTTTTCCGCCGATGTCGAGGCCAAGC
AGAAAGGAACGAAGCAAAGCACTGACGTTGGCGGTGCTTTACAGATGTTT
AACGTGAAAGGGGCAGATTTTGGACCTTCCCCTGTGTACAGTAGTGACGA
AGACGAACTTAAGAAGGAACGAAATGCGACAGGTATGGATCCCGTGGTAA
CCAACCAGAAGGATATGTGTCTCAAAACAGAACCGGAGGTAGATATTGGG
GCTGAGTTGGCGCCGTTGGACTGTGACGAAAAGTTCGAAGACTACGTATC
GGGGATGAAGAAACCCAAACACAGAGCGAAAGATGTGAGTGCTGGGACGG
GAGTGGGAGAGCGCCAGCAGAGGATGATTGGAAAAGAGAATGGGGATGGA
TGTGGCGGTGTTGATATTGCTGGGCAGAAACGCATGTTGCTGGACCGTCC
TggagaagaagacggagaacaagaggagcaagaaaaggaAGCGAAGGTTG
GTGGGTGCAAGCAGGAGAATGGCATGAAAGTTGGGAGTGGGgatgaagaa
gatagtgaagaggatgacgaagattatgtggtggatgaagatgtagatga
aggtgacgatgacgctgatgaagatgaGTTCAGTGACGCCAGCAGTGTTA
TTGATCTCATCAATGGCATCCCAGAGCAAAATGCTCGTGACAGGGCGTGT
TCGAGCACTGTGAAGATGTTGGTGCGGAGGGGCCACCGTGACGGCGGAGG
CCGTGGTGGACGAGAAGGTTTCGTGGGtgatgaaggagatcatgatgatg
atgattatgatAGCGAGTCAGGCGATGGACTGGGAaagaagaagaagaag
aagaaggagaaggagcacgaagaagaggaagtgagaagtataagGATCAT
GGACTTGGATGAATTTCTTGAGGAGCAAGAGACGGAATTGAAGGAAATGG
GTGATGAATTCGTGTCTCGAAGACGGCTGGATGTGTTCAGTGGGGTTTCG
Cagaaggtgaagaacctgaagaagaagaagaatatgatgaaaaggaagat
gaagaagaaCATTGGGGAAGGCAGCGGAGGTGATGAGGAGGGATTTGATT
TCAGTTTGGAGCGAGCGGAGAGGGCTGTGAAGTTGTCCCCTAAAGAGCTT
TGGACGCGGATGATACTGGAGGCTGAGCTGCGCTATCCTGACTATTTCCG
TAGCACCAACGCTGTTCTCAAGGATTTCGGGTGTAAGATGGGGAAAGGGA
GCATTGCGTATCCTGGGTTGAAGGTAACACCAGAGAACTGTGCGGATCTC
AACGAGGTGTACATGTTGCGGTTCAAGATGAAGGAATTGATGAACACGAG
GGGGAGCGGGACGTTTCAGGGATTGAAGTCAATTGTAGGCCAGTTTATGA
GGTGGGCCATTGCGGCGGGGAAGCTGGCAAAGTCGGATGGCTGGAAGCCG
ATGGCAGTGTTCCGATTGTTCCGGGAGGAAAGGCTTGTACGATGTTTTGT
CAATTACTTTATACGCGTCGCGTCGTTTGGGACTGTGGCAAGCAAGTGCA
ATGCGCTTCGCACCATGTGCCAATATGCGAACGTGAGAATGACTGATCAG
GAGAATCGGAACCGTGTGGCGCGTGTGGACATGTACCTGAAGACCTCCTT
CAACGCTGCGAAGGGTGCTGCGAGAGAAGACTACCGGAAGAAGCAGAGTG
CGGAGGAACGGATAAGGAATCAGAGCATTGTGACACGGGAGCAGATTGAG
GAAGGGATCCGAGTGGCGCGAGGGAAGCTCAACGACATCATCGAAACATT
TACAGCCCAAGGTTGGTAA

Coding sequence (CDS) from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+

>Gcaud3731.t1 ID=Gcaud3731.t1|Name=Gcaud3731.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2469bp|location=Sequence derived from alignment at NODE_1775_length_8440_cov_3.859983:231..2699+ (Gracilaria caudata M_176_S67 male)
ATGAGTGATCCGTTATTCAACTGCATATTCGGAGAAGAGGGTGTGGAGAA
AGTGAATGGGAGACGTGCGGCTCGGCGTAAAAATGTTGGTTGTGCTCCGG
CCAAAGCTTCACTGAAAGGTGGTGGGGTGCATATGTCCTCCCGTCTGGGG
GGAAGCATGCGCCCGGTGTCGGTGAAGGTGCATAACGATGGTCGCACGGT
CAATGGCGAAGTGCAGGGAGACAGTATCGAGTGCAGTGACGAAAGCGAAC
TTGGCGACATTGATTTGTTCCCAAACACACAGGCGCTACAGGGCTCCCGA
AAGGCGCTGAAGGGGGTATCAGGGGTGAGAAAGAGCCAGAGCCACGTGGT
GCGCAAAGTGATGAACGATGTGACGAACGAGAAGAAATCGGTGAAGGGGA
GTGAGATTGTGGCACGTTCCAAATATGCAGAGAAGAAGAAGACGCCGGTG
TACGATCTAACCAAAGAAGATGGGGATACAGGCGCTGAGAATAACGACCT
TGAGGGCGGCAACGGCGGCGGTCGCCGTCGCATCTTAGACTATGCAGAGA
AGACGCCGCTGCTGAACAAGAAGAAGCTGTCGTTTTCAGCTGACGTCCAG
CCGAAGCAGAAGGGAACGAAGCAAAGCAGTAACATTGGGGGTGGTGCTTT
ACCGACGTTGAAGAAGAAGCTGTCGTTTTCCGCCGATGTCGAGGCCAAGC
AGAAAGGAACGAAGCAAAGCACTGACGTTGGCGGTGCTTTACAGATGTTT
AACGTGAAAGGGGCAGATTTTGGACCTTCCCCTGTGTACAGTAGTGACGA
AGACGAACTTAAGAAGGAACGAAATGCGACAGGTATGGATCCCGTGGTAA
CCAACCAGAAGGATATGTGTCTCAAAACAGAACCGGAGGTAGATATTGGG
GCTGAGTTGGCGCCGTTGGACTGTGACGAAAAGTTCGAAGACTACGTATC
GGGGATGAAGAAACCCAAACACAGAGCGAAAGATGTGAGTGCTGGGACGG
GAGTGGGAGAGCGCCAGCAGAGGATGATTGGAAAAGAGAATGGGGATGGA
TGTGGCGGTGTTGATATTGCTGGGCAGAAACGCATGTTGCTGGACCGTCC
TggagaagaagacggagaacaagaggagcaagaaaaggaAGCGAAGGTTG
GTGGGTGCAAGCAGGAGAATGGCATGAAAGTTGGGAGTGGGgatgaagaa
gatagtgaagaggatgacgaagattatgtggtggatgaagatgtagatga
aggtgacgatgacgctgatgaagatgaGTTCAGTGACGCCAGCAGTGTTA
TTGATCTCATCAATGGCATCCCAGAGCAAAATGCTCGTGACAGGGCGTGT
TCGAGCACTGTGAAGATGTTGGTGCGGAGGGGCCACCGTGACGGCGGAGG
CCGTGGTGGACGAGAAGGTTTCGTGGGtgatgaaggagatcatgatgatg
atgattatgatAGCGAGTCAGGCGATGGACTGGGAaagaagaagaagaag
aagaaggagaaggagcacgaagaagaggaagtgagaagtataagGATCAT
GGACTTGGATGAATTTCTTGAGGAGCAAGAGACGGAATTGAAGGAAATGG
GTGATGAATTCGTGTCTCGAAGACGGCTGGATGTGTTCAGTGGGGTTTCG
Cagaaggtgaagaacctgaagaagaagaagaatatgatgaaaaggaagat
gaagaagaaCATTGGGGAAGGCAGCGGAGGTGATGAGGAGGGATTTGATT
TCAGTTTGGAGCGAGCGGAGAGGGCTGTGAAGTTGTCCCCTAAAGAGCTT
TGGACGCGGATGATACTGGAGGCTGAGCTGCGCTATCCTGACTATTTCCG
TAGCACCAACGCTGTTCTCAAGGATTTCGGGTGTAAGATGGGGAAAGGGA
GCATTGCGTATCCTGGGTTGAAGGTAACACCAGAGAACTGTGCGGATCTC
AACGAGGTGTACATGTTGCGGTTCAAGATGAAGGAATTGATGAACACGAG
GGGGAGCGGGACGTTTCAGGGATTGAAGTCAATTGTAGGCCAGTTTATGA
GGTGGGCCATTGCGGCGGGGAAGCTGGCAAAGTCGGATGGCTGGAAGCCG
ATGGCAGTGTTCCGATTGTTCCGGGAGGAAAGGCTTGTACGATGTTTTGT
CAATTACTTTATACGCGTCGCGTCGTTTGGGACTGTGGCAAGCAAGTGCA
ATGCGCTTCGCACCATGTGCCAATATGCGAACGTGAGAATGACTGATCAG
GAGAATCGGAACCGTGTGGCGCGTGTGGACATGTACCTGAAGACCTCCTT
CAACGCTGCGAAGGGTGCTGCGAGAGAAGACTACCGGAAGAAGCAGAGTG
CGGAGGAACGGATAAGGAATCAGAGCATTGTGACACGGGAGCAGATTGAG
GAAGGGATCCGAGTGGCGCGAGGGAAGCTCAACGACATCATCGAAACATT
TACAGCCCAAGGTTGGTAA