Gcaud3720.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3720.t1
Unique NameGcaud3720.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_848_length_17052_cov_4.693237contigNODE_848_length_17052_cov_4.693237:8264..9010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1123366.TH3_10746
PFAMsHSP20
Max annot lvl204441|Rhodospirillales
KEGG koko:K13993
KEGG Pathwayko04141,map04141
Evalue2.93e-08
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1N7C7@1224|Proteobacteria,2UFRX@28211|Alphaproteobacteria,2JU4S@204441|Rhodospirillales
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3720Gcaud3720Gracilaria caudata M_176_S67 malegeneNODE_848_length_17052_cov_4.693237 8264..9010 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3720.t1.start1Gcaud3720.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_848_length_17052_cov_4.693237 8264..8266 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3720.t1.CDS1Gcaud3720.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_848_length_17052_cov_4.693237 8264..9010 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3720.t1.exon1Gcaud3720.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_848_length_17052_cov_4.693237 8264..9010 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3720.t1.stop1Gcaud3720.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_848_length_17052_cov_4.693237 9008..9010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3720.t1Gcaud3720.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_848_length_17052_cov_4.693237 8264..9010 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3720.t1 ID=Gcaud3720.t1|Name=Gcaud3720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp
MATSAPIAIPGLSSVFAFVSFEDSTFRQNHTSDVHHDLRHPHSHNRSSLP
PESPSPPSIKERWRHLHSLPITLRLNQQLTTLHKTIPVPTFNYIQLPQFS
KMVMYITPFDIPTFTLFEMDSCPQRKAKPTETERSPAAYAHHTDDNQTVL
QVDLPGVEKEHVSVEVKDHKLTVTGKRYRFTPDSAEKTEKPAEDSADDQQ
TCVVYKRTFTLARTIDVAAVSAQGFENGVLSLVLPKKTQVEARRIAIE*
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spliced messenger RNA

>Gcaud3720.t1 ID=Gcaud3720.t1|Name=Gcaud3720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_848_length_17052_cov_4.693237:8264..9010+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAACCTCCGCGCCCATCGCCATTCCCGGGCTTTCCAGCGTCTTCGC
CTTTGTTTCTTTCGAAGATTCTACATTCCGCCAGAACCACACTTCGGACG
TCCATCACGATTTACGCCACCCTCACTCGCACAACAGGAGTAGTTTACCG
CCTGAGTCGCCGTCGCCGCCGTCTATAAAAGAGCGATGGCGGCACCTGCA
TTCTCTTCCCATCACACTTCGACTCAACCAACAACTCACTACTCTTCATA
AGACAATTCCCGTACCAACTTTCAACTACATTCAACTGCCTCAATTTTCA
AAAATGGTTATGTACATCACCCCGTTCGACATTCCCACCTTCACCCTTTT
CGAGATGGACTCGTGCCCTCAGCGCAAGGCCAAACCAACAGAAACTGAGC
GGAGCCCCGCCGCGTATGCGCATCACACAGATGACAACCAAACAGTTCTG
CAGGTTGACCTGCCGGGCGTGGAAAAGGAGCACGTGTCCGTGGAGGTGAA
AGATCATAAGTTAACCGTCACTGGAAAGAGGTATAGATTTACCCCCGATT
CTGCCGAAAAGACTGAGAAGCCGGCTGAGGATAGCGCTGACGACCAGCAA
ACATGTGTCGTTTACAAGCGGACGTTCACGCTTGCGCGCACTATTGATGT
GGCGGCTGTGAGCGCGCAAGGCTTTGAGAATGGCGTTTTGAGCCTTGTTC
TTCCTAAGAAGACGCAAGTAGAAGCTAGAAGGATCGCCATCGAGTGA
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protein sequence of Gcaud3720.t1

>Gcaud3720.t1 ID=Gcaud3720.t1|Name=Gcaud3720.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MATSAPIAIPGLSSVFAFVSFEDSTFRQNHTSDVHHDLRHPHSHNRSSLP
PESPSPPSIKERWRHLHSLPITLRLNQQLTTLHKTIPVPTFNYIQLPQFS
KMVMYITPFDIPTFTLFEMDSCPQRKAKPTETERSPAAYAHHTDDNQTVL
QVDLPGVEKEHVSVEVKDHKLTVTGKRYRFTPDSAEKTEKPAEDSADDQQ
TCVVYKRTFTLARTIDVAAVSAQGFENGVLSLVLPKKTQVEARRIAIE*
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mRNA from alignment at NODE_848_length_17052_cov_4.693237:8264..9010+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3720.t1 ID=Gcaud3720.t1|Name=Gcaud3720.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_848_length_17052_cov_4.693237:8264..9010+ (Gracilaria caudata M_176_S67 male)
ATGGCAACCTCCGCGCCCATCGCCATTCCCGGGCTTTCCAGCGTCTTCGC
CTTTGTTTCTTTCGAAGATTCTACATTCCGCCAGAACCACACTTCGGACG
TCCATCACGATTTACGCCACCCTCACTCGCACAACAGGAGTAGTTTACCG
CCTGAGTCGCCGTCGCCGCCGTCTATAAAAGAGCGATGGCGGCACCTGCA
TTCTCTTCCCATCACACTTCGACTCAACCAACAACTCACTACTCTTCATA
AGACAATTCCCGTACCAACTTTCAACTACATTCAACTGCCTCAATTTTCA
AAAATGGTTATGTACATCACCCCGTTCGACATTCCCACCTTCACCCTTTT
CGAGATGGACTCGTGCCCTCAGCGCAAGGCCAAACCAACAGAAACTGAGC
GGAGCCCCGCCGCGTATGCGCATCACACAGATGACAACCAAACAGTTCTG
CAGGTTGACCTGCCGGGCGTGGAAAAGGAGCACGTGTCCGTGGAGGTGAA
AGATCATAAGTTAACCGTCACTGGAAAGAGGTATAGATTTACCCCCGATT
CTGCCGAAAAGACTGAGAAGCCGGCTGAGGATAGCGCTGACGACCAGCAA
ACATGTGTCGTTTACAAGCGGACGTTCACGCTTGCGCGCACTATTGATGT
GGCGGCTGTGAGCGCGCAAGGCTTTGAGAATGGCGTTTTGAGCCTTGTTC
TTCCTAAGAAGACGCAAGTAGAAGCTAGAAGGATCGCCATCGAGTGA
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Coding sequence (CDS) from alignment at NODE_848_length_17052_cov_4.693237:8264..9010+

>Gcaud3720.t1 ID=Gcaud3720.t1|Name=Gcaud3720.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=747bp|location=Sequence derived from alignment at NODE_848_length_17052_cov_4.693237:8264..9010+ (Gracilaria caudata M_176_S67 male)
ATGGCAACCTCCGCGCCCATCGCCATTCCCGGGCTTTCCAGCGTCTTCGC
CTTTGTTTCTTTCGAAGATTCTACATTCCGCCAGAACCACACTTCGGACG
TCCATCACGATTTACGCCACCCTCACTCGCACAACAGGAGTAGTTTACCG
CCTGAGTCGCCGTCGCCGCCGTCTATAAAAGAGCGATGGCGGCACCTGCA
TTCTCTTCCCATCACACTTCGACTCAACCAACAACTCACTACTCTTCATA
AGACAATTCCCGTACCAACTTTCAACTACATTCAACTGCCTCAATTTTCA
AAAATGGTTATGTACATCACCCCGTTCGACATTCCCACCTTCACCCTTTT
CGAGATGGACTCGTGCCCTCAGCGCAAGGCCAAACCAACAGAAACTGAGC
GGAGCCCCGCCGCGTATGCGCATCACACAGATGACAACCAAACAGTTCTG
CAGGTTGACCTGCCGGGCGTGGAAAAGGAGCACGTGTCCGTGGAGGTGAA
AGATCATAAGTTAACCGTCACTGGAAAGAGGTATAGATTTACCCCCGATT
CTGCCGAAAAGACTGAGAAGCCGGCTGAGGATAGCGCTGACGACCAGCAA
ACATGTGTCGTTTACAAGCGGACGTTCACGCTTGCGCGCACTATTGATGT
GGCGGCTGTGAGCGCGCAAGGCTTTGAGAATGGCGTTTTGAGCCTTGTTC
TTCCTAAGAAGACGCAAGTAGAAGCTAGAAGGATCGCCATCGAGTGA
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