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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 109760.SPPG_08509T0 |
| Preferred name | GRX3 |
| PFAMs | Glutaredoxin,Thioredoxin |
| Max annot lvl | 4751|Fungi |
| GOs | GO:0001085,GO:0001102,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006790,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006979,GO:0006996,GO:0007010,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010604,GO:0010638,GO:0015036,GO:0015037,GO:0015038,GO:0016043,GO:0016226,GO:0016491,GO:0016667,GO:0019222,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030029,GO:0030036,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031163,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0033613,GO:0034599,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044572,GO:0045185,GO:0046916,GO:0048037,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051186,GO:0051220,GO:0051235,GO:0051246,GO:0051247,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055114,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090311,GO:0090312,GO:0098771,GO:1901564,GO:1902275,GO:1903025,GO:1903026,GO:1905269,GO:2000677,GO:2000678,GO:2001252 |
| Evalue | 9.81e-62 |
| EggNOG OGs | COG0278@1|root,KOG0911@2759|Eukaryota,38BF9@33154|Opisthokonta,3NXX9@4751|Fungi |
| Description | Monothiol |
| COG category | O |
| BiGG Reaction | iMM904.YER174C |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3716.t1.start1 | Gcaud3716.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1853_length_8081_cov_3.536671 5180..5182 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3716.t1.stop1 | Gcaud3716.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1853_length_8081_cov_3.536671 6487..6489 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3716.t1 ID=Gcaud3716.t1|Name=Gcaud3716.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=301bp
MDRRNSGVHAVSTDHQLDSLISSGVRMVVNCWAPWAAPCKQMNVVFETLQ
EQSSKRRVVRRSSGADATLLCNNVRWLTESLDATLLEAACDVVSTLDEVT
LVMKGTVDEPKCGFSRQAVQTLRSAGVQFATFNVLEDEDVRRVMKERFDW
PTFPMVFARGKLIGGIDIVREMADEGTLVEQLLSDEADDERVEGADGAAQ
GESDEKTRAREGEAGAEKTAGSPGAPRCGFSRKMVEILREQAVQYEHFDI
LTDNEVRQGLKKVWQWPTFPQLYSRGKLIGGLDIVKELVDSGELKKELTA
* back to topspliced messenger RNA >Gcaud3716.t1 ID=Gcaud3716.t1|Name=Gcaud3716.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=903bp|location=Sequence derived from alignment at NODE_1853_length_8081_cov_3.536671:5180..6489+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGGATCGGCGAAACAGCGGCGTGCACGCCGTTAGCACGGATCATCAGCT
GGACTCGCTCATCTCGAGCGGCGTTCGCATGGTGGTGAACTGCTGGGCAC
CATGGGCGGCGCCGTGCAAACAGATGAACGTGGTGTTCGAAACACTGCAG
GAACAGAGCAGCAAACGGCGTGTGGTGCGACGCAGCAGCGGCGCGGACGC
GACGTTGCTGTGCAACAACGTGCGCTGGTTGACAGAGAGTTTGGATGCGA
CGCTTTTGGAGGCGGCTTGCGATGTGGTGAGCACACTGGACGAAGTGACG
TTGGTGATGAAAGGCACGGTGGATGAGCCCAAGTGTGGGTTCAGTCGACA
GGCGGTGCAGACGCTGCGCTCGGCTGGCGTGCAGTTTGCGACGTTCAATG
TGCTGGAGGACGAGGACGTGCGGCGCGTGATGAAGGAGCGCTTTGATTGG
CCTACGTTTCCGATGGTGTTTGCGCGCGGAAAGCTGATTGGCGGTATTGA
CATTGTGCGCGAGATGGCGGACGAGGGCACGCTGGTGGAGCAACTGCTGA
GCGATGAAGCGGACGATGAACGCGTGGAAGGTGCGGACGGCGCGGCGCAG
GGGGAGAGCGACGAGAAGACGCGCGCACGCGAGGGGGAGGCGGGCGCGGA
AAAAACGGCAGGCTCGCCGGGCGCGCCGCGCTGCGGCTTTTCGAGGAAGA
TGGTGGAAATTCTGCGAGAACAGGCGGTGCAGTACGAGCATTTCGACATT
CTGACGGACAATGAGGTGCGACAGGGACTGAAGAAAGTGTGGCAGTGGCC
AACTTTCCCGCAGCTGTACTCGCGCGGAAAGTTGATTGGCGGATTGGATA
TCGTGAAGGAACTGGTCGACAGCGGTGAATTGAAGAAGGAACTGACAGCG
TAG back to topprotein sequence of Gcaud3716.t1 >Gcaud3716.t1 ID=Gcaud3716.t1|Name=Gcaud3716.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=301bp
MDRRNSGVHAVSTDHQLDSLISSGVRMVVNCWAPWAAPCKQMNVVFETLQ
EQSSKRRVVRRSSGADATLLCNNVRWLTESLDATLLEAACDVVSTLDEVT
LVMKGTVDEPKCGFSRQAVQTLRSAGVQFATFNVLEDEDVRRVMKERFDW
PTFPMVFARGKLIGGIDIVREMADEGTLVEQLLSDEADDERVEGADGAAQ
GESDEKTRAREGEAGAEKTAGSPGAPRCGFSRKMVEILREQAVQYEHFDI
LTDNEVRQGLKKVWQWPTFPQLYSRGKLIGGLDIVKELVDSGELKKELTA
* back to topmRNA from alignment at NODE_1853_length_8081_cov_3.536671:5180..6489+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3716.t1 ID=Gcaud3716.t1|Name=Gcaud3716.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1310bp|location=Sequence derived from alignment at NODE_1853_length_8081_cov_3.536671:5180..6489+ (Gracilaria caudata M_176_S67 male)
ATGGATCGGCGAAACAGCGGCGTGCACGCCGTTAGCACGGATCATCAGCT
GGACTCGCTCATCTCGGTACGTACTTTTGCGCGTGTTCTTATTTTTGCGG
GTTGCTGTTGTTTATAGCGCTGCACGAGGCACTGACTGGGGTGCGATGGT
TTGCGGTGACGACGGAACAGAGCGGCGTTCGCATGGTGGTGAACTGCTGG
GCACCATGGGCGGCGCCGTGCAAACAGATGAACGTGGTGTTCGAAACACT
GCAGGAACAGAGCAGCAAACGGTACGCAGGCGCGGCGGTGGACGAACACG
TGCCGCTGCTGTTCTGCAGCATGGAGGCGGAGAAAATGCCGAGTATGATG
AAGCGATACAACATCGCCACAGTGCCCACATTTCTGTTTTTTGCTGGCAG
GCGTGTGGTGCGACGCAGCAGCGGCGCGGACGCGACGTTGCTGTGCAACA
ACGTGCGCTGGTTGACAGAGAGTTTGGATGCGACGCTTTTGGAGGCGGCT
TGCGATGTGGTGAGCACACTGGACGAAGTGACGTTGGTGATGAAAGGCAC
GGTGGATGAGCCCAAGTGTGGGTTCAGTCGACAGGCGGTGCAGACGCTGC
GCTCGGCTGGCGTGCAGTTTGCGACGTTCAATGTGCTGGAGGACGAGGAC
GTGCGGCGCGTGATGAAGGAGCGCTTTGATTGGCCTACGTTTCCGATGGT
GTTTGCGCGCGGAAAGCTGATTGGCGGTATTGACATTGTGCGCGAGATGG
CGGACGAGGGCACGCTGGTGGAGCAACTGCTGAGCGATGAAGCGGACGAT
GAACGCGTGGAAGGTGCGGACGGCGCGGCGCAGGGGGAGAGCGACGAGAA
GACGCGCGCACGCGAGGGGGAGGCGGGCGCGGAAAAAACGGCAGTGAGCG
GGGGGGACGCGCAACTgagcggcaacgggcacgcggcggcggcggcggcg
gcggcggggcgcgggggcgaggaggaggaggaggaggaggtggacggggt
gtcggtggcgctgcgcgagcgtctggcggcgctggtgaaCCGGAGCGAGG
TGATGCTGTTCATGAAGGGCTCGCCGGGCGCGCCGCGCTGCGGCTTTTCG
AGGAAGATGGTGGAAATTCTGCGAGAACAGGCGGTGCAGTACGAGCATTT
CGACATTCTGACGGACAATGAGGTGCGACAGGGACTGAAGAAAGTGTGGC
AGTGGCCAACTTTCCCGCAGCTGTACTCGCGCGGAAAGTTGATTGGCGGA
TTGGATATCGTGAAGGAACTGGTCGACAGCGGTGAATTGAAGAAGGAACT
GACAGCGTAG back to topCoding sequence (CDS) from alignment at NODE_1853_length_8081_cov_3.536671:5180..6489+ >Gcaud3716.t1 ID=Gcaud3716.t1|Name=Gcaud3716.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=903bp|location=Sequence derived from alignment at NODE_1853_length_8081_cov_3.536671:5180..6489+ (Gracilaria caudata M_176_S67 male)
ATGGATCGGCGAAACAGCGGCGTGCACGCCGTTAGCACGGATCATCAGCT
GGACTCGCTCATCTCGAGCGGCGTTCGCATGGTGGTGAACTGCTGGGCAC
CATGGGCGGCGCCGTGCAAACAGATGAACGTGGTGTTCGAAACACTGCAG
GAACAGAGCAGCAAACGGCGTGTGGTGCGACGCAGCAGCGGCGCGGACGC
GACGTTGCTGTGCAACAACGTGCGCTGGTTGACAGAGAGTTTGGATGCGA
CGCTTTTGGAGGCGGCTTGCGATGTGGTGAGCACACTGGACGAAGTGACG
TTGGTGATGAAAGGCACGGTGGATGAGCCCAAGTGTGGGTTCAGTCGACA
GGCGGTGCAGACGCTGCGCTCGGCTGGCGTGCAGTTTGCGACGTTCAATG
TGCTGGAGGACGAGGACGTGCGGCGCGTGATGAAGGAGCGCTTTGATTGG
CCTACGTTTCCGATGGTGTTTGCGCGCGGAAAGCTGATTGGCGGTATTGA
CATTGTGCGCGAGATGGCGGACGAGGGCACGCTGGTGGAGCAACTGCTGA
GCGATGAAGCGGACGATGAACGCGTGGAAGGTGCGGACGGCGCGGCGCAG
GGGGAGAGCGACGAGAAGACGCGCGCACGCGAGGGGGAGGCGGGCGCGGA
AAAAACGGCAGGCTCGCCGGGCGCGCCGCGCTGCGGCTTTTCGAGGAAGA
TGGTGGAAATTCTGCGAGAACAGGCGGTGCAGTACGAGCATTTCGACATT
CTGACGGACAATGAGGTGCGACAGGGACTGAAGAAAGTGTGGCAGTGGCC
AACTTTCCCGCAGCTGTACTCGCGCGGAAAGTTGATTGGCGGATTGGATA
TCGTGAAGGAACTGGTCGACAGCGGTGAATTGAAGAAGGAACTGACAGCG
TAG back to top
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