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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud3715.t1.stop1 | Gcaud3715.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_1853_length_8081_cov_3.536671 1967..1969 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud3715.t1.start1 | Gcaud3715.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_1853_length_8081_cov_3.536671 4568..4570 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3715.t1 ID=Gcaud3715.t1|Name=Gcaud3715.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=868bp MTSFVETMHNALVNLVTSLLNLPSLAEHYSTEKVHAATCRVASSVPPRAS PLLQIAHAVEALEHEHYAAWPPILRDFLPTICAALILAMAGPEPLALQRY RYAELLQTPHLVAQLTHGFTCPLPLSDRPHFVQTLQKAGRREIPCGDEID ACLEEGVLHVALSYRHANTDYRKGKISRATAEEAYDIISNLLGVSQRTVV RVWIDQNLHRYPESQFGPWYERGLLPYAVLPVVSALSETNGFTVGRTRPW IWVETSLAVAAGGVNCKPQLHHTLSDLFCISTDIMAYLTGAASSRSATSE KLTTIRKKMVRGKPRDSLFFGKFATVESCLRKALVAVSFWTPAMLEHAEY PFADEFWPFVLWARMQLIRLRTGSGLGSLNGESVEDTWLERLAWIKCLPD RQSSFEKLGDPYLRIEADAKDYASVIDMLKVSGICFVKDGIYEIADGVAE SALVRKPSNRYFYFRIDGDKVLFDVNPSLMMRGASQPFSLTSRSLAEKVN QISTSRGSYTLWDRRFPPGELPAYKSCCSIFNLDDELRHRLGECEKSVVQ FGQVTFQPYGFAIGWDYVERVYQAQRGQTVRRLNECDILCLRALKCEDAE KFVTELMDDRVFESAARIIKAQKNMSFEVWPSAVCVGTDGENIWRACRST RTKDDERRMTKDRISVGHDVVAKGVHHFALYREDIGLIRHTFETKASREE LVGSITDLRMNGDVEDFLEKMRLMMGSPEFDGYKPNGLCLGPHVVPGGED AKPYPKKFRLDGSEFHRCLDCSKTYSPVNRRLCILSSCRHTRRVQVKWTE VHGCHEFEHENVTLELCSTCKNLFSPRVGKKCVIFTDAKSKSGGFIWKGV HECPARSNELDIFGEVY* back to topspliced messenger RNA >Gcaud3715.t1 ID=Gcaud3715.t1|Name=Gcaud3715.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2604bp|location=Sequence derived from alignment at NODE_1853_length_8081_cov_3.536671:1967..4570- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGACTTCATTTGTTGAGACTATGCATAACGCCCTGGTCAATCTTGTAAC CAGCTTGCTCAATTTACCATCCCTGGCAGAGCACTACTCAACTGAAAAAG TGCACGCCGCAACATGTCGTGTGGCGTCCTCCGTTCCGCCTCGCGCATCA CCGCTACTGCAAATCGCGCATGCCGTGGAGGCGCTCGAGCACGAACACTA CGCCGCTTGGCCACCCATTCTGCGCGACTTCCTGCCAACAATATGCGCAG CGCTCATTCTAGCAATGGCCGGCCCGGAGCCGCTCGCGTTGCAAAGATAT CGCTACGCAGAACTCTTGCAAACGCCACATCTTGTCGCGCAGCTTACACA CGGCTTCACGTGTCCATTGCCGTTATCCGATCGACCTCACTTCGTGCAGA CTCTGCAAAAGGCTGGACGTCGAGAGATCCCGTGCGGCGATGAGATCGAT GCGTGTCTCGAGGAGGGAGTACTACATGTTGCTCTTTCTTACCGGCATGC GAACACTGACTATCGCAAAGGCAAGATTTCCCGTGCTACAGCTGAGGAGG CTTACGACATCATTTCGAACCTTCTCGGCGTGTCCCAACGCACAGTCGTT CGTGTCTGGATCGACCAAAATCTACATCGCTACCCGGAATCGCAATTTGG TCCGTGGTATGAACGCGGTCTGCTTCCCTACGCTGTGCTGCCTGTCGTGA GCGCTCTTTCCGAAACCAACGGCTTCACAGTCGGACGAACTCGACCGTGG ATCTGGGTGGAAACCAGCCTTGCGGTCGCAGCAGGCGGTGTCAACTGCAA GCCACAGCTTCATCACACGCTCTCTGATCTCTTTTGCATTTCAACTGACA TAATGGCCTACCTAACCGGCGCGGCATCATCGAGATCGGCTACCTCCGAA AAGCTGACCACCATTCGAAAGAAAATGGTACGTGGAAAGCCGCGCGATAG CCTCTTCTTCGGCAAATTCGCCACAGTTGAGAGCTGCCTGCGAAAAGCGC TTGTTGCTGTTTCCTTCTGGACCCCTGCAATGCTGGAGCACGCAGAGTAT CCATTTGCCGACGAATTTTGGCCGTTTGTTCTGTGGGCTCGCATGCAACT CATTCGTTTACGGACAGGGTCTGGTTTAGGTTCTCTGAACGGAGAATCCG TCGAAGACACATGGCTAGAGAGACTTGCCTGGATCAAATGCCTTCCGGAC CGGCAGTCCTCTTTCGAAAAGCTCGGCGACCCCTACTTGCGAATTGAAGC CGACGCGAAAGATTACGCATCTGTTATCGACATGCTCAAAGTAAGCGGCA TCTGCTTTGTGAAGGACGGGATTTACGAAATCGCCGATGGTGTGGCTGAG AGTGCGCTTGTTCGAAAACCAAGTAACCGCTACTTTTACTTCCGGATCGA CGGGGACAAGGTTCTGTTCGATGTCAACCCGTCGCTGATGATGAGGGGTG CTTCTCAACCGTTTTCACTGACTTCCCGAAGCCTCGCTGAGAAAGTCAAT CAAATATCAACATCTCGCGGGTCGTACACGCTGTGGGACAGGCGGTTTCC GCCTGGAGAGCTGCCAGCTTATAAGTCTTGTTGCTCGATATTCAACCTAG ATGACGAGCTCCGGCACCGTCTCGGCGAATGCGAAAAGTCCGTTGTGCAG TTCGGTCAAGTGACTTTTCAACCTTATGGCTTCGCTATCGGCTGGGATTA TGTGGAACGCGTCTACCAAGCGCAACGCGGACAGACTGTTCGGCGGCTCA ATGAGTGTGACATCCTGTGTCTGCGAGCGCTAAAATGTGAAGATGCCGAA AAGTTTGTAACGGAGCTTATGGACGACCGAGTTTTCGAGAGCGCAGCCAG AATTATAAAGGCTCAAAAGAACATGAGCTTTGAAGTTTGGCCTAGTGCCG TATGCGTGGGCACTGATGGTGAAAATATTTGGAGAGCCTGCCGCTCCACG AGAACAAAAGATGATGAGAGACGGATGACTAAAGATCGAATCAGTGTCGG TCACGACGTCGTTGCGAAAGGAGTGCACCACTTCGCTTTGTACCGGGAGG ATATTGGCCTGATCCGGCACACATTTGAGACAAAAGCGTCACGTGAAGAA CTCGTGGGATCGATAACTGATCTGCGGATGAACGGAGACGTTGAGGACTT CCTGGAAAAGATGCGCTTGATGATGGGAAGCCCTGAATTTGACGGTTACA AGCCGAACGGCCTCTGCCTGGGTCCACACGTCGTACCAGGGGGAGAAGAT GCGAAGCCTTATCCGAAAAAGTTTCGTCTCGACGGTAGTGAGTTCCATAG GTGTCTTGACTGCAGCAAGACGTACAGCCCGGTCAACCGGAGACTGTGTA TTCTTTCATCTTGCAGACACACAAGACGAGTGCAGGTGAAATGGACTGAA GTACATGGCTGTCATGAGTTTGAGCATGAAAATGTAACACTAGAGCTATG CAGTACATGCAAAAACCTTTTCAGCCCCCGAGTTGGAAAGAAGTGTGTGA TTTTCACTGATGCGAAGTCTAAGAGTGGAGGTTTTATATGGAAGGGAGTG CACGAATGTCCCGCAAGAAGCAATGAACTCGACATATTCGGGGAGGTGTA TTGA back to topprotein sequence of Gcaud3715.t1 >Gcaud3715.t1 ID=Gcaud3715.t1|Name=Gcaud3715.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=868bp
MTSFVETMHNALVNLVTSLLNLPSLAEHYSTEKVHAATCRVASSVPPRAS PLLQIAHAVEALEHEHYAAWPPILRDFLPTICAALILAMAGPEPLALQRY RYAELLQTPHLVAQLTHGFTCPLPLSDRPHFVQTLQKAGRREIPCGDEID ACLEEGVLHVALSYRHANTDYRKGKISRATAEEAYDIISNLLGVSQRTVV RVWIDQNLHRYPESQFGPWYERGLLPYAVLPVVSALSETNGFTVGRTRPW IWVETSLAVAAGGVNCKPQLHHTLSDLFCISTDIMAYLTGAASSRSATSE KLTTIRKKMVRGKPRDSLFFGKFATVESCLRKALVAVSFWTPAMLEHAEY PFADEFWPFVLWARMQLIRLRTGSGLGSLNGESVEDTWLERLAWIKCLPD RQSSFEKLGDPYLRIEADAKDYASVIDMLKVSGICFVKDGIYEIADGVAE SALVRKPSNRYFYFRIDGDKVLFDVNPSLMMRGASQPFSLTSRSLAEKVN QISTSRGSYTLWDRRFPPGELPAYKSCCSIFNLDDELRHRLGECEKSVVQ FGQVTFQPYGFAIGWDYVERVYQAQRGQTVRRLNECDILCLRALKCEDAE KFVTELMDDRVFESAARIIKAQKNMSFEVWPSAVCVGTDGENIWRACRST RTKDDERRMTKDRISVGHDVVAKGVHHFALYREDIGLIRHTFETKASREE LVGSITDLRMNGDVEDFLEKMRLMMGSPEFDGYKPNGLCLGPHVVPGGED AKPYPKKFRLDGSEFHRCLDCSKTYSPVNRRLCILSSCRHTRRVQVKWTE VHGCHEFEHENVTLELCSTCKNLFSPRVGKKCVIFTDAKSKSGGFIWKGV HECPARSNELDIFGEVY* back to topmRNA from alignment at NODE_1853_length_8081_cov_3.536671:1967..4570- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3715.t1 ID=Gcaud3715.t1|Name=Gcaud3715.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2604bp|location=Sequence derived from alignment at NODE_1853_length_8081_cov_3.536671:1967..4570- (Gracilaria caudata M_176_S67 male) ATGACTTCATTTGTTGAGACTATGCATAACGCCCTGGTCAATCTTGTAAC
CAGCTTGCTCAATTTACCATCCCTGGCAGAGCACTACTCAACTGAAAAAG
TGCACGCCGCAACATGTCGTGTGGCGTCCTCCGTTCCGCCTCGCGCATCA
CCGCTACTGCAAATCGCGCATGCCGTGGAGGCGCTCGAGCACGAACACTA
CGCCGCTTGGCCACCCATTCTGCGCGACTTCCTGCCAACAATATGCGCAG
CGCTCATTCTAGCAATGGCCGGCCCGGAGCCGCTCGCGTTGCAAAGATAT
CGCTACGCAGAACTCTTGCAAACGCCACATCTTGTCGCGCAGCTTACACA
CGGCTTCACGTGTCCATTGCCGTTATCCGATCGACCTCACTTCGTGCAGA
CTCTGCAAAAGGCTGGACGTCGAGAGATCCCGTGCGGCGATGAGATCGAT
GCGTGTCTCGAGGAGGGAGTACTACATGTTGCTCTTTCTTACCGGCATGC
GAACACTGACTATCGCAAAGGCAAGATTTCCCGTGCTACAGCTGAGGAGG
CTTACGACATCATTTCGAACCTTCTCGGCGTGTCCCAACGCACAGTCGTT
CGTGTCTGGATCGACCAAAATCTACATCGCTACCCGGAATCGCAATTTGG
TCCGTGGTATGAACGCGGTCTGCTTCCCTACGCTGTGCTGCCTGTCGTGA
GCGCTCTTTCCGAAACCAACGGCTTCACAGTCGGACGAACTCGACCGTGG
ATCTGGGTGGAAACCAGCCTTGCGGTCGCAGCAGGCGGTGTCAACTGCAA
GCCACAGCTTCATCACACGCTCTCTGATCTCTTTTGCATTTCAACTGACA
TAATGGCCTACCTAACCGGCGCGGCATCATCGAGATCGGCTACCTCCGAA
AAGCTGACCACCATTCGAAAGAAAATGGTACGTGGAAAGCCGCGCGATAG
CCTCTTCTTCGGCAAATTCGCCACAGTTGAGAGCTGCCTGCGAAAAGCGC
TTGTTGCTGTTTCCTTCTGGACCCCTGCAATGCTGGAGCACGCAGAGTAT
CCATTTGCCGACGAATTTTGGCCGTTTGTTCTGTGGGCTCGCATGCAACT
CATTCGTTTACGGACAGGGTCTGGTTTAGGTTCTCTGAACGGAGAATCCG
TCGAAGACACATGGCTAGAGAGACTTGCCTGGATCAAATGCCTTCCGGAC
CGGCAGTCCTCTTTCGAAAAGCTCGGCGACCCCTACTTGCGAATTGAAGC
CGACGCGAAAGATTACGCATCTGTTATCGACATGCTCAAAGTAAGCGGCA
TCTGCTTTGTGAAGGACGGGATTTACGAAATCGCCGATGGTGTGGCTGAG
AGTGCGCTTGTTCGAAAACCAAGTAACCGCTACTTTTACTTCCGGATCGA
CGGGGACAAGGTTCTGTTCGATGTCAACCCGTCGCTGATGATGAGGGGTG
CTTCTCAACCGTTTTCACTGACTTCCCGAAGCCTCGCTGAGAAAGTCAAT
CAAATATCAACATCTCGCGGGTCGTACACGCTGTGGGACAGGCGGTTTCC
GCCTGGAGAGCTGCCAGCTTATAAGTCTTGTTGCTCGATATTCAACCTAG
ATGACGAGCTCCGGCACCGTCTCGGCGAATGCGAAAAGTCCGTTGTGCAG
TTCGGTCAAGTGACTTTTCAACCTTATGGCTTCGCTATCGGCTGGGATTA
TGTGGAACGCGTCTACCAAGCGCAACGCGGACAGACTGTTCGGCGGCTCA
ATGAGTGTGACATCCTGTGTCTGCGAGCGCTAAAATGTGAAGATGCCGAA
AAGTTTGTAACGGAGCTTATGGACGACCGAGTTTTCGAGAGCGCAGCCAG
AATTATAAAGGCTCAAAAGAACATGAGCTTTGAAGTTTGGCCTAGTGCCG
TATGCGTGGGCACTGATGGTGAAAATATTTGGAGAGCCTGCCGCTCCACG
AGAACAAAAGATGATGAGAGACGGATGACTAAAGATCGAATCAGTGTCGG
TCACGACGTCGTTGCGAAAGGAGTGCACCACTTCGCTTTGTACCGGGAGG
ATATTGGCCTGATCCGGCACACATTTGAGACAAAAGCGTCACGTGAAGAA
CTCGTGGGATCGATAACTGATCTGCGGATGAACGGAGACGTTGAGGACTT
CCTGGAAAAGATGCGCTTGATGATGGGAAGCCCTGAATTTGACGGTTACA
AGCCGAACGGCCTCTGCCTGGGTCCACACGTCGTACCAGGGGGAGAAGAT
GCGAAGCCTTATCCGAAAAAGTTTCGTCTCGACGGTAGTGAGTTCCATAG
GTGTCTTGACTGCAGCAAGACGTACAGCCCGGTCAACCGGAGACTGTGTA
TTCTTTCATCTTGCAGACACACAAGACGAGTGCAGGTGAAATGGACTGAA
GTACATGGCTGTCATGAGTTTGAGCATGAAAATGTAACACTAGAGCTATG
CAGTACATGCAAAAACCTTTTCAGCCCCCGAGTTGGAAAGAAGTGTGTGA
TTTTCACTGATGCGAAGTCTAAGAGTGGAGGTTTTATATGGAAGGGAGTG
CACGAATGTCCCGCAAGAAGCAATGAACTCGACATATTCGGGGAGGTGTA
TTGA back to topCoding sequence (CDS) from alignment at NODE_1853_length_8081_cov_3.536671:1967..4570- >Gcaud3715.t1 ID=Gcaud3715.t1|Name=Gcaud3715.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2604bp|location=Sequence derived from alignment at NODE_1853_length_8081_cov_3.536671:1967..4570- (Gracilaria caudata M_176_S67 male) ATGACTTCATTTGTTGAGACTATGCATAACGCCCTGGTCAATCTTGTAAC CAGCTTGCTCAATTTACCATCCCTGGCAGAGCACTACTCAACTGAAAAAG TGCACGCCGCAACATGTCGTGTGGCGTCCTCCGTTCCGCCTCGCGCATCA CCGCTACTGCAAATCGCGCATGCCGTGGAGGCGCTCGAGCACGAACACTA CGCCGCTTGGCCACCCATTCTGCGCGACTTCCTGCCAACAATATGCGCAG CGCTCATTCTAGCAATGGCCGGCCCGGAGCCGCTCGCGTTGCAAAGATAT CGCTACGCAGAACTCTTGCAAACGCCACATCTTGTCGCGCAGCTTACACA CGGCTTCACGTGTCCATTGCCGTTATCCGATCGACCTCACTTCGTGCAGA CTCTGCAAAAGGCTGGACGTCGAGAGATCCCGTGCGGCGATGAGATCGAT GCGTGTCTCGAGGAGGGAGTACTACATGTTGCTCTTTCTTACCGGCATGC GAACACTGACTATCGCAAAGGCAAGATTTCCCGTGCTACAGCTGAGGAGG CTTACGACATCATTTCGAACCTTCTCGGCGTGTCCCAACGCACAGTCGTT CGTGTCTGGATCGACCAAAATCTACATCGCTACCCGGAATCGCAATTTGG TCCGTGGTATGAACGCGGTCTGCTTCCCTACGCTGTGCTGCCTGTCGTGA GCGCTCTTTCCGAAACCAACGGCTTCACAGTCGGACGAACTCGACCGTGG ATCTGGGTGGAAACCAGCCTTGCGGTCGCAGCAGGCGGTGTCAACTGCAA GCCACAGCTTCATCACACGCTCTCTGATCTCTTTTGCATTTCAACTGACA TAATGGCCTACCTAACCGGCGCGGCATCATCGAGATCGGCTACCTCCGAA AAGCTGACCACCATTCGAAAGAAAATGGTACGTGGAAAGCCGCGCGATAG CCTCTTCTTCGGCAAATTCGCCACAGTTGAGAGCTGCCTGCGAAAAGCGC TTGTTGCTGTTTCCTTCTGGACCCCTGCAATGCTGGAGCACGCAGAGTAT CCATTTGCCGACGAATTTTGGCCGTTTGTTCTGTGGGCTCGCATGCAACT CATTCGTTTACGGACAGGGTCTGGTTTAGGTTCTCTGAACGGAGAATCCG TCGAAGACACATGGCTAGAGAGACTTGCCTGGATCAAATGCCTTCCGGAC CGGCAGTCCTCTTTCGAAAAGCTCGGCGACCCCTACTTGCGAATTGAAGC CGACGCGAAAGATTACGCATCTGTTATCGACATGCTCAAAGTAAGCGGCA TCTGCTTTGTGAAGGACGGGATTTACGAAATCGCCGATGGTGTGGCTGAG AGTGCGCTTGTTCGAAAACCAAGTAACCGCTACTTTTACTTCCGGATCGA CGGGGACAAGGTTCTGTTCGATGTCAACCCGTCGCTGATGATGAGGGGTG CTTCTCAACCGTTTTCACTGACTTCCCGAAGCCTCGCTGAGAAAGTCAAT CAAATATCAACATCTCGCGGGTCGTACACGCTGTGGGACAGGCGGTTTCC GCCTGGAGAGCTGCCAGCTTATAAGTCTTGTTGCTCGATATTCAACCTAG ATGACGAGCTCCGGCACCGTCTCGGCGAATGCGAAAAGTCCGTTGTGCAG TTCGGTCAAGTGACTTTTCAACCTTATGGCTTCGCTATCGGCTGGGATTA TGTGGAACGCGTCTACCAAGCGCAACGCGGACAGACTGTTCGGCGGCTCA ATGAGTGTGACATCCTGTGTCTGCGAGCGCTAAAATGTGAAGATGCCGAA AAGTTTGTAACGGAGCTTATGGACGACCGAGTTTTCGAGAGCGCAGCCAG AATTATAAAGGCTCAAAAGAACATGAGCTTTGAAGTTTGGCCTAGTGCCG TATGCGTGGGCACTGATGGTGAAAATATTTGGAGAGCCTGCCGCTCCACG AGAACAAAAGATGATGAGAGACGGATGACTAAAGATCGAATCAGTGTCGG TCACGACGTCGTTGCGAAAGGAGTGCACCACTTCGCTTTGTACCGGGAGG ATATTGGCCTGATCCGGCACACATTTGAGACAAAAGCGTCACGTGAAGAA CTCGTGGGATCGATAACTGATCTGCGGATGAACGGAGACGTTGAGGACTT CCTGGAAAAGATGCGCTTGATGATGGGAAGCCCTGAATTTGACGGTTACA AGCCGAACGGCCTCTGCCTGGGTCCACACGTCGTACCAGGGGGAGAAGAT GCGAAGCCTTATCCGAAAAAGTTTCGTCTCGACGGTAGTGAGTTCCATAG GTGTCTTGACTGCAGCAAGACGTACAGCCCGGTCAACCGGAGACTGTGTA TTCTTTCATCTTGCAGACACACAAGACGAGTGCAGGTGAAATGGACTGAA GTACATGGCTGTCATGAGTTTGAGCATGAAAATGTAACACTAGAGCTATG CAGTACATGCAAAAACCTTTTCAGCCCCCGAGTTGGAAAGAAGTGTGTGA TTTTCACTGATGCGAAGTCTAAGAGTGGAGGTTTTATATGGAAGGGAGTG CACGAATGTCCCGCAAGAAGCAATGAACTCGACATATTCGGGGAGGTGTA TTGA back to top
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