Gcaud3712.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3712.t1
Unique Name	Gcaud3712.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	817

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1139_length_13394_cov_4.453206	contig	NODE_1139_length_13394_cov_4.453206:1282..3732 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3712	Gcaud3712	Gracilaria caudata M_176_S67 male	gene	NODE_1139_length_13394_cov_4.453206 1282..3732 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3712.t1.stop1	Gcaud3712.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1139_length_13394_cov_4.453206 1282..1284 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3712.t1.CDS1	Gcaud3712.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1139_length_13394_cov_4.453206 1282..3732 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3712.t1.exon1	Gcaud3712.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1139_length_13394_cov_4.453206 1282..3732 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3712.t1.start1	Gcaud3712.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1139_length_13394_cov_4.453206 3730..3732 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3712.t1	Gcaud3712.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1139_length_13394_cov_4.453206 1282..3732 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732-
coding sequence from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732-

mRNA sequence

>Gcaud3712.t1 ID=Gcaud3712.t1|Name=Gcaud3712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=817bp
MKVNNSVVDNEFVECDVPFAINYAGLYKPHKWFSSQGLFTPRHFADSSLR
YMIPFLAQLGRIWLKDCSQVRIALDGNASHYTNAVIVRHAVRHAKMLTER
DSNGAQMAANWSNMWMNILIYNYKADYTFKSRVVLPFGCSEKDFLMGKMY
ARYGSKISRLIDSLPQELFEVDDVETDRAEVVQSISAFHLESFLIFLDSK
VAMEQVDSSETSTAQKLESGIVGAPDTHSHARSRFPALEASCINPAAIIT
GEDGVEEQTRGTKAEGGVSGSESNIHRHLIGNGDKTHAQFRSDPQKWVET
HKYFENWPLKRVVSQKMRKGFEFKGWLTRLWAIKPIDFTIHLENLFSLAP
NGRGYIQGKPSPAGPNPFHVELHGWLSYGSVADRESYYTELCGNNQTIRK
VEADERVIPRCESQRQFWRLWDLPEHLPFALEDIDLQTAGRRGSIKFIGY
VMEIVRDCLAKWVSHHVGENSDTDIWSPEMRTDAAYVEFESSKEFADVGL
KYAELLAPEYFKNWMMTEQLLWEFQSYMLGLINKGECIYGPSSVKLMLLC
MLGLPRLDVSQISPVKKFGGFRVDFDKVYQKPFAIYINFNRDAGRHGKVR
LSITPLAGGNCFRFEWAKWIHTFESGMRVLTFEYEEDDLLPLSPTPTNTK
DDDDAARSTLSDKVDSNELDDSIGNNAVGGDGVAMDSVADAELDANGVSP
GGDHEDGVAMSAGCSCGCEYKLNSKAKRVFLRDLNGTKKFYWVWEGWRPQ
QAFKEDRYPILHDVRTPEKNKRWSDKEGQEQHGMGTVGHSPPRDGSEVGD
DMAAGDVAFVDADGLV*

spliced messenger RNA

>Gcaud3712.t1 ID=Gcaud3712.t1|Name=Gcaud3712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2451bp|location=Sequence derived from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGTCAACAACTCTGTGGTTGATAATGAGTTTGTTGAGTGCGATGT
TCCTTTTGCCATTAATTACGCAGGGCTGTACAAACCGCATAAGTGGTTTT
CGTCGCAGGGCCTGTTCACGCCACGACACTTTGCAGATTCTTCGCTCAGA
TATATGATTCCTTTCCTCGCACAATTGGGAAGAATATGGCTGAAGGACTG
TTCTCAAGTTAGAATCGCTTTGGATGGAAATGCTAGTCATTACACGAACG
CTGTCATCGTGAGACATGCCGTAAGACATGCAAAGATGCTTACTGAACGG
GATTCGAATGGAGCGCAGATGGCTGCGAACTGGTCAAACATGTGGATGAA
TATTCTAATTTACAACTACAAAGCAGATTATACTTTCAAAAGCCGAGTAG
TATTGCCGTTTGGGTGCAGTGAAAAGGACTTTCTCATGGGGAAAATGTAT
GCGCGATACGGGTCAAAGATCAGCCGCCTTATTGACAGTTTACCACAAGA
ATTATTTGAAGTGGATGACGTAGAAACTGACAGGGCCGAAGTTGTTCAAA
GTATCTCCGCATTTCATTTGGAAAGCTTCCTCATCTTTCTAGATTCGAAA
GTCGCTATGGAACAAGTCGATTCCTCTGAAACATCGACTGCTCAAAAATT
GGAATCTGGCATAGTTGGCGCTCCTGATACGCATTCGCATGCCAGGTCAC
GTTTCCCAGCCTTGGAAGCATCTTGTATAAATCCGGCTGCAATAATCACA
GGAGAAGACGGAGTTGAAGAGCAAACACGTGGCACAAAAGCTGAGGGAGG
AGTATCAGGCAGCGAATCCAACATTCATCGTCACTTGATTGGAAACGGCG
ACAAGACGCATGCGCAGTTTCGTAGTGATCCGCAGAAATGGGTTGAAACA
CATAAATACTTTGAAAACTGGCCACTCAAAAGAGTTGTCTCCCAGAAGAT
GAGAAAAGGTTTTGAGTTCAAAGGCTGGTTGACTAGATTATGGGCGATCA
AACCTATCGACTTCACCATTCACTTGGAAAATCTCTTTTCTCTCGCTCCA
AATGGTCGTGGCTATATCCAAGGCAAGCCCTCTCCCGCAGGTCCTAATCC
GTTCCACGTGGAACTCCACGGATGGTTGTCTTATGGAAGTGTTGCAGACA
GAGAGTCTTACTACACGGAGCTTTGTGGCAACAACCAGACGATTCGCAAA
GTGGAAGCCGACGAGAGGGTCATACCTCGGTGCGAAAGTCAACGGCAGTT
CTGGCGACTTTGGGACCTACCGGAACATTTGCCTTTTGCTCTTGAAGATA
TTGATCTGCAAACCGCCGGGCGAAGAGGCAGTATCAAGTTTATTGGATAT
GTGATGGAGATCGTGCGTGATTGTCTAGCCAAGTGGGTCTCACACCATGT
TGGCGAGAACTCGGACACAGACATATGGAGTCCGGAAATGAGAACGGACG
CTGCTTATGTAGAATTCGAGTCAAGTAAGGAATTCGCCGACGTGGGATTG
AAATACGCAGAACTCCTTGCTCCCGAATATTTCAAAAATTGGATGATGAC
GGAACAATTGTTATGGGAATTTCAAAGTTACATGTTGGGATTGATCAACA
AGGGTGAGTGCATATATGGACCGTCTTCTGTGAAGTTGATGTTACTGTGT
ATGCTGGGTCTGCCTAGACTGGATGTATCGCAAATATCTCCCGTGAAGAA
GTTCGGAGGTTTTCGTGTCGATTTCGATAAGGTGTATCAGAAACCGTTTG
CGATATACATTAATTTCAATAGAGATGCCGGAAGACATGGAAAAGTTCGA
CTCAGTATAACCCCGTTAGCCGGGGGAAATTGCTTCAGGTTTGAATGGGC
CAAGTGGATTCATACGTTTGAGTCCGGCATGAGAGTGCTGACATTCGAGT
ACGAGGAAGACGATCTTTTGCCTTTGTCGCCAACCCCGACGAACACCAAA
GATGATGATGACGCCGCAAGGAGCACTCTCTCCGACAAAGTGGACAGTAA
CGAATTGGATGACTCAATCGGAAACAATGCAGTTGGAGGAGACGGCGTCG
CCATGGACTCAGTTGCAGATGCGGAGCTGGACGCAAATGGAGTGTCGCCC
GGAGGAGACCATGAGGATGGAGTAGCCATGTCTGCAGGATGCTCTTGTGG
TTGCGAGTACAAACTGAATTCGAAGGCTAAACGGGTGTTTCTTAGGGACT
TAAACGGTACGAAGAAGTTCTATTGGGTGTGGGAGGGATGGAGACCTCAG
CAGGCGTTCAAGGAAGACAGATATCCTATATTGCACGATGTGCGAACACC
AGAGAAGAACAAGAGATGGAGCGATAAGGAGGGACAGGAGCAGCACGGTA
TGGGCACTGTAGGACATTCGCCACCGCGTGATGGGTCGGAAGTGGGCGAC
GACATGGCGGCAGGAGACGTGGCGTTTGTGGATGCAGACGGACTAGTGTA
G

protein sequence of Gcaud3712.t1

>Gcaud3712.t1 ID=Gcaud3712.t1|Name=Gcaud3712.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=817bp
MKVNNSVVDNEFVECDVPFAINYAGLYKPHKWFSSQGLFTPRHFADSSLR
YMIPFLAQLGRIWLKDCSQVRIALDGNASHYTNAVIVRHAVRHAKMLTER
DSNGAQMAANWSNMWMNILIYNYKADYTFKSRVVLPFGCSEKDFLMGKMY
ARYGSKISRLIDSLPQELFEVDDVETDRAEVVQSISAFHLESFLIFLDSK
VAMEQVDSSETSTAQKLESGIVGAPDTHSHARSRFPALEASCINPAAIIT
GEDGVEEQTRGTKAEGGVSGSESNIHRHLIGNGDKTHAQFRSDPQKWVET
HKYFENWPLKRVVSQKMRKGFEFKGWLTRLWAIKPIDFTIHLENLFSLAP
NGRGYIQGKPSPAGPNPFHVELHGWLSYGSVADRESYYTELCGNNQTIRK
VEADERVIPRCESQRQFWRLWDLPEHLPFALEDIDLQTAGRRGSIKFIGY
VMEIVRDCLAKWVSHHVGENSDTDIWSPEMRTDAAYVEFESSKEFADVGL
KYAELLAPEYFKNWMMTEQLLWEFQSYMLGLINKGECIYGPSSVKLMLLC
MLGLPRLDVSQISPVKKFGGFRVDFDKVYQKPFAIYINFNRDAGRHGKVR
LSITPLAGGNCFRFEWAKWIHTFESGMRVLTFEYEEDDLLPLSPTPTNTK
DDDDAARSTLSDKVDSNELDDSIGNNAVGGDGVAMDSVADAELDANGVSP
GGDHEDGVAMSAGCSCGCEYKLNSKAKRVFLRDLNGTKKFYWVWEGWRPQ
QAFKEDRYPILHDVRTPEKNKRWSDKEGQEQHGMGTVGHSPPRDGSEVGD
DMAAGDVAFVDADGLV*

mRNA from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3712.t1 ID=Gcaud3712.t1|Name=Gcaud3712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2451bp|location=Sequence derived from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732- (Gracilaria caudata M_176_S67 male)
ATGAAAGTCAACAACTCTGTGGTTGATAATGAGTTTGTTGAGTGCGATGT
TCCTTTTGCCATTAATTACGCAGGGCTGTACAAACCGCATAAGTGGTTTT
CGTCGCAGGGCCTGTTCACGCCACGACACTTTGCAGATTCTTCGCTCAGA
TATATGATTCCTTTCCTCGCACAATTGGGAAGAATATGGCTGAAGGACTG
TTCTCAAGTTAGAATCGCTTTGGATGGAAATGCTAGTCATTACACGAACG
CTGTCATCGTGAGACATGCCGTAAGACATGCAAAGATGCTTACTGAACGG
GATTCGAATGGAGCGCAGATGGCTGCGAACTGGTCAAACATGTGGATGAA
TATTCTAATTTACAACTACAAAGCAGATTATACTTTCAAAAGCCGAGTAG
TATTGCCGTTTGGGTGCAGTGAAAAGGACTTTCTCATGGGGAAAATGTAT
GCGCGATACGGGTCAAAGATCAGCCGCCTTATTGACAGTTTACCACAAGA
ATTATTTGAAGTGGATGACGTAGAAACTGACAGGGCCGAAGTTGTTCAAA
GTATCTCCGCATTTCATTTGGAAAGCTTCCTCATCTTTCTAGATTCGAAA
GTCGCTATGGAACAAGTCGATTCCTCTGAAACATCGACTGCTCAAAAATT
GGAATCTGGCATAGTTGGCGCTCCTGATACGCATTCGCATGCCAGGTCAC
GTTTCCCAGCCTTGGAAGCATCTTGTATAAATCCGGCTGCAATAATCACA
GGAGAAGACGGAGTTGAAGAGCAAACACGTGGCACAAAAGCTGAGGGAGG
AGTATCAGGCAGCGAATCCAACATTCATCGTCACTTGATTGGAAACGGCG
ACAAGACGCATGCGCAGTTTCGTAGTGATCCGCAGAAATGGGTTGAAACA
CATAAATACTTTGAAAACTGGCCACTCAAAAGAGTTGTCTCCCAGAAGAT
GAGAAAAGGTTTTGAGTTCAAAGGCTGGTTGACTAGATTATGGGCGATCA
AACCTATCGACTTCACCATTCACTTGGAAAATCTCTTTTCTCTCGCTCCA
AATGGTCGTGGCTATATCCAAGGCAAGCCCTCTCCCGCAGGTCCTAATCC
GTTCCACGTGGAACTCCACGGATGGTTGTCTTATGGAAGTGTTGCAGACA
GAGAGTCTTACTACACGGAGCTTTGTGGCAACAACCAGACGATTCGCAAA
GTGGAAGCCGACGAGAGGGTCATACCTCGGTGCGAAAGTCAACGGCAGTT
CTGGCGACTTTGGGACCTACCGGAACATTTGCCTTTTGCTCTTGAAGATA
TTGATCTGCAAACCGCCGGGCGAAGAGGCAGTATCAAGTTTATTGGATAT
GTGATGGAGATCGTGCGTGATTGTCTAGCCAAGTGGGTCTCACACCATGT
TGGCGAGAACTCGGACACAGACATATGGAGTCCGGAAATGAGAACGGACG
CTGCTTATGTAGAATTCGAGTCAAGTAAGGAATTCGCCGACGTGGGATTG
AAATACGCAGAACTCCTTGCTCCCGAATATTTCAAAAATTGGATGATGAC
GGAACAATTGTTATGGGAATTTCAAAGTTACATGTTGGGATTGATCAACA
AGGGTGAGTGCATATATGGACCGTCTTCTGTGAAGTTGATGTTACTGTGT
ATGCTGGGTCTGCCTAGACTGGATGTATCGCAAATATCTCCCGTGAAGAA
GTTCGGAGGTTTTCGTGTCGATTTCGATAAGGTGTATCAGAAACCGTTTG
CGATATACATTAATTTCAATAGAGATGCCGGAAGACATGGAAAAGTTCGA
CTCAGTATAACCCCGTTAGCCGGGGGAAATTGCTTCAGGTTTGAATGGGC
CAAGTGGATTCATACGTTTGAGTCCGGCATGAGAGTGCTGACATTCGAGT
ACGAGGAAGACGATCTTTTGCCTTTGTCGCCAACCCCGACGAACACCAAA
GATGATGATGACGCCGCAAGGAGCACTCTCTCCGACAAAGTGGACAGTAA
CGAATTGGATGACTCAATCGGAAACAATGCAGTTGGAGGAGACGGCGTCG
CCATGGACTCAGTTGCAGATGCGGAGCTGGACGCAAATGGAGTGTCGCCC
GGAGGAGACCATGAGGATGGAGTAGCCATGTCTGCAGGATGCTCTTGTGG
TTGCGAGTACAAACTGAATTCGAAGGCTAAACGGGTGTTTCTTAGGGACT
TAAACGGTACGAAGAAGTTCTATTGGGTGTGGGAGGGATGGAGACCTCAG
CAGGCGTTCAAGGAAGACAGATATCCTATATTGCACGATGTGCGAACACC
AGAGAAGAACAAGAGATGGAGCGATAAGGAGGGACAGGAGCAGCACGGTA
TGGGCACTGTAGGACATTCGCCACCGCGTGATGGGTCGGAAGTGGGCGAC
GACATGGCGGCAGGAGACGTGGCGTTTGTGGATGCAGACGGACTAGTGTA
G

Coding sequence (CDS) from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732-

>Gcaud3712.t1 ID=Gcaud3712.t1|Name=Gcaud3712.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2451bp|location=Sequence derived from alignment at NODE_1139_length_13394_cov_4.453206:1282..3732- (Gracilaria caudata M_176_S67 male)
ATGAAAGTCAACAACTCTGTGGTTGATAATGAGTTTGTTGAGTGCGATGT
TCCTTTTGCCATTAATTACGCAGGGCTGTACAAACCGCATAAGTGGTTTT
CGTCGCAGGGCCTGTTCACGCCACGACACTTTGCAGATTCTTCGCTCAGA
TATATGATTCCTTTCCTCGCACAATTGGGAAGAATATGGCTGAAGGACTG
TTCTCAAGTTAGAATCGCTTTGGATGGAAATGCTAGTCATTACACGAACG
CTGTCATCGTGAGACATGCCGTAAGACATGCAAAGATGCTTACTGAACGG
GATTCGAATGGAGCGCAGATGGCTGCGAACTGGTCAAACATGTGGATGAA
TATTCTAATTTACAACTACAAAGCAGATTATACTTTCAAAAGCCGAGTAG
TATTGCCGTTTGGGTGCAGTGAAAAGGACTTTCTCATGGGGAAAATGTAT
GCGCGATACGGGTCAAAGATCAGCCGCCTTATTGACAGTTTACCACAAGA
ATTATTTGAAGTGGATGACGTAGAAACTGACAGGGCCGAAGTTGTTCAAA
GTATCTCCGCATTTCATTTGGAAAGCTTCCTCATCTTTCTAGATTCGAAA
GTCGCTATGGAACAAGTCGATTCCTCTGAAACATCGACTGCTCAAAAATT
GGAATCTGGCATAGTTGGCGCTCCTGATACGCATTCGCATGCCAGGTCAC
GTTTCCCAGCCTTGGAAGCATCTTGTATAAATCCGGCTGCAATAATCACA
GGAGAAGACGGAGTTGAAGAGCAAACACGTGGCACAAAAGCTGAGGGAGG
AGTATCAGGCAGCGAATCCAACATTCATCGTCACTTGATTGGAAACGGCG
ACAAGACGCATGCGCAGTTTCGTAGTGATCCGCAGAAATGGGTTGAAACA
CATAAATACTTTGAAAACTGGCCACTCAAAAGAGTTGTCTCCCAGAAGAT
GAGAAAAGGTTTTGAGTTCAAAGGCTGGTTGACTAGATTATGGGCGATCA
AACCTATCGACTTCACCATTCACTTGGAAAATCTCTTTTCTCTCGCTCCA
AATGGTCGTGGCTATATCCAAGGCAAGCCCTCTCCCGCAGGTCCTAATCC
GTTCCACGTGGAACTCCACGGATGGTTGTCTTATGGAAGTGTTGCAGACA
GAGAGTCTTACTACACGGAGCTTTGTGGCAACAACCAGACGATTCGCAAA
GTGGAAGCCGACGAGAGGGTCATACCTCGGTGCGAAAGTCAACGGCAGTT
CTGGCGACTTTGGGACCTACCGGAACATTTGCCTTTTGCTCTTGAAGATA
TTGATCTGCAAACCGCCGGGCGAAGAGGCAGTATCAAGTTTATTGGATAT
GTGATGGAGATCGTGCGTGATTGTCTAGCCAAGTGGGTCTCACACCATGT
TGGCGAGAACTCGGACACAGACATATGGAGTCCGGAAATGAGAACGGACG
CTGCTTATGTAGAATTCGAGTCAAGTAAGGAATTCGCCGACGTGGGATTG
AAATACGCAGAACTCCTTGCTCCCGAATATTTCAAAAATTGGATGATGAC
GGAACAATTGTTATGGGAATTTCAAAGTTACATGTTGGGATTGATCAACA
AGGGTGAGTGCATATATGGACCGTCTTCTGTGAAGTTGATGTTACTGTGT
ATGCTGGGTCTGCCTAGACTGGATGTATCGCAAATATCTCCCGTGAAGAA
GTTCGGAGGTTTTCGTGTCGATTTCGATAAGGTGTATCAGAAACCGTTTG
CGATATACATTAATTTCAATAGAGATGCCGGAAGACATGGAAAAGTTCGA
CTCAGTATAACCCCGTTAGCCGGGGGAAATTGCTTCAGGTTTGAATGGGC
CAAGTGGATTCATACGTTTGAGTCCGGCATGAGAGTGCTGACATTCGAGT
ACGAGGAAGACGATCTTTTGCCTTTGTCGCCAACCCCGACGAACACCAAA
GATGATGATGACGCCGCAAGGAGCACTCTCTCCGACAAAGTGGACAGTAA
CGAATTGGATGACTCAATCGGAAACAATGCAGTTGGAGGAGACGGCGTCG
CCATGGACTCAGTTGCAGATGCGGAGCTGGACGCAAATGGAGTGTCGCCC
GGAGGAGACCATGAGGATGGAGTAGCCATGTCTGCAGGATGCTCTTGTGG
TTGCGAGTACAAACTGAATTCGAAGGCTAAACGGGTGTTTCTTAGGGACT
TAAACGGTACGAAGAAGTTCTATTGGGTGTGGGAGGGATGGAGACCTCAG
CAGGCGTTCAAGGAAGACAGATATCCTATATTGCACGATGTGCGAACACC
AGAGAAGAACAAGAGATGGAGCGATAAGGAGGGACAGGAGCAGCACGGTA
TGGGCACTGTAGGACATTCGCCACCGCGTGATGGGTCGGAAGTGGGCGAC
GACATGGCGGCAGGAGACGTGGCGTTTGTGGATGCAGACGGACTAGTGTA
G