Gcaud3704.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3704.t1
Unique NameGcaud3704.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length237
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_544_length_22540_cov_5.148158contigNODE_544_length_22540_cov_5.148158:5543..6253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1333998.M2A_3185
Preferred nameomp28
PFAMsSIMPL
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K09807
GOsGO:0005575,GO:0005623,GO:0042597,GO:0044464
Evalue5.53e-39
EggNOG OGsCOG2968@1|root,COG2968@2|Bacteria,1RH7T@1224|Proteobacteria,2U981@28211|Alphaproteobacteria,4BS7M@82117|unclassified Alphaproteobacteria
DescriptionProtein of unknown function (DUF541)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3704Gcaud3704Gracilaria caudata M_176_S67 malegeneNODE_544_length_22540_cov_5.148158 5543..6253 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3704.t1.stop1Gcaud3704.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_544_length_22540_cov_5.148158 5543..5545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3704.t1.CDS1Gcaud3704.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_544_length_22540_cov_5.148158 5543..6253 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3704.t1.exon1Gcaud3704.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_544_length_22540_cov_5.148158 5543..6253 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3704.t1.start1Gcaud3704.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_544_length_22540_cov_5.148158 6251..6253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3704.t1Gcaud3704.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_544_length_22540_cov_5.148158 5543..6253 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3704.t1 ID=Gcaud3704.t1|Name=Gcaud3704.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=237bp
MAPSTKTLFIASCFLLFASVAAQTNGQSLRRTISVSGVGTVSAPPDTGII
NTGVLTTAPTAQAALSANNQQFQQVLEALNAQGVNSSDIQTTFFSVNPQF
QFGPNGEQQGVISYEVNNQVNVIVRDLDNLGAILDALVTAGSNTVSGLNF
RIEENAELLRQARTMAVEEATSRANVLAQAAGVQVGNIITISDQSIPQPQ
FAPSGAFGGVGSVVPIGPGQVAVVVTVFVQFELVEV*
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spliced messenger RNA

>Gcaud3704.t1 ID=Gcaud3704.t1|Name=Gcaud3704.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_544_length_22540_cov_5.148158:5543..6253- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGTCAACGAAAACTCTCTTCATCGCCTCGTGCTTTCTCCTGTT
TGCTTCAGTGGCCGCTCAAACAAATGGCCAGTCCCTTCGGCGCACCATCA
GCGTGTCCGGAGTAGGCACCGTATCCGCGCCTCCAGATACCGGCATCATC
AACACCGGCGTACTCACTACAGCCCCTACCGCGCAGGCGGCGCTCTCCGC
CAACAACCAACAGTTCCAGCAAGTATTGGAGGCGCTCAACGCACAAGGAG
TCAACAGTAGTGATATACAGACCACTTTCTTTAGTGTCAACCCGCAATTT
CAATTCGGACCCAATGGCGAACAACAGGGCGTCATTAGCTACGAGGTCAA
CAATCAGGTGAATGTCATCGTGCGTGACCTGGACAACCTGGGTGCCATTC
TTGATGCCCTGGTTACGGCAGGGAGCAATACTGTGTCTGGTCTGAACTTC
AGGATTGAGGAAAATGCCGAGCTTCTCAGGCAGGCTCGCACAATGGCTGT
TGAAGAGGCTACGAGCCGTGCTAACGTTCTCGCGCAGGCGGCTGGAGTTC
AGGTTGGAAATATTATTACCATTAGCGACCAATCAATTCCACAACCTCAG
TTCGCCCCATCTGGAGCTTTTGGCGGGGTAGGTTCTGTTGTACCGATTGG
ACCTGGTCAGGTTGCTGTTGTTGTTACGGTCTTCGTTCAGTTTGAACTTG
TCGAGGTTTGA
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protein sequence of Gcaud3704.t1

>Gcaud3704.t1 ID=Gcaud3704.t1|Name=Gcaud3704.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=237bp
MAPSTKTLFIASCFLLFASVAAQTNGQSLRRTISVSGVGTVSAPPDTGII
NTGVLTTAPTAQAALSANNQQFQQVLEALNAQGVNSSDIQTTFFSVNPQF
QFGPNGEQQGVISYEVNNQVNVIVRDLDNLGAILDALVTAGSNTVSGLNF
RIEENAELLRQARTMAVEEATSRANVLAQAAGVQVGNIITISDQSIPQPQ
FAPSGAFGGVGSVVPIGPGQVAVVVTVFVQFELVEV*
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mRNA from alignment at NODE_544_length_22540_cov_5.148158:5543..6253-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3704.t1 ID=Gcaud3704.t1|Name=Gcaud3704.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=711bp|location=Sequence derived from alignment at NODE_544_length_22540_cov_5.148158:5543..6253- (Gracilaria caudata M_176_S67 male)
ATGGCTCCGTCAACGAAAACTCTCTTCATCGCCTCGTGCTTTCTCCTGTT
TGCTTCAGTGGCCGCTCAAACAAATGGCCAGTCCCTTCGGCGCACCATCA
GCGTGTCCGGAGTAGGCACCGTATCCGCGCCTCCAGATACCGGCATCATC
AACACCGGCGTACTCACTACAGCCCCTACCGCGCAGGCGGCGCTCTCCGC
CAACAACCAACAGTTCCAGCAAGTATTGGAGGCGCTCAACGCACAAGGAG
TCAACAGTAGTGATATACAGACCACTTTCTTTAGTGTCAACCCGCAATTT
CAATTCGGACCCAATGGCGAACAACAGGGCGTCATTAGCTACGAGGTCAA
CAATCAGGTGAATGTCATCGTGCGTGACCTGGACAACCTGGGTGCCATTC
TTGATGCCCTGGTTACGGCAGGGAGCAATACTGTGTCTGGTCTGAACTTC
AGGATTGAGGAAAATGCCGAGCTTCTCAGGCAGGCTCGCACAATGGCTGT
TGAAGAGGCTACGAGCCGTGCTAACGTTCTCGCGCAGGCGGCTGGAGTTC
AGGTTGGAAATATTATTACCATTAGCGACCAATCAATTCCACAACCTCAG
TTCGCCCCATCTGGAGCTTTTGGCGGGGTAGGTTCTGTTGTACCGATTGG
ACCTGGTCAGGTTGCTGTTGTTGTTACGGTCTTCGTTCAGTTTGAACTTG
TCGAGGTTTGA
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Coding sequence (CDS) from alignment at NODE_544_length_22540_cov_5.148158:5543..6253-

>Gcaud3704.t1 ID=Gcaud3704.t1|Name=Gcaud3704.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=711bp|location=Sequence derived from alignment at NODE_544_length_22540_cov_5.148158:5543..6253- (Gracilaria caudata M_176_S67 male)
ATGGCTCCGTCAACGAAAACTCTCTTCATCGCCTCGTGCTTTCTCCTGTT
TGCTTCAGTGGCCGCTCAAACAAATGGCCAGTCCCTTCGGCGCACCATCA
GCGTGTCCGGAGTAGGCACCGTATCCGCGCCTCCAGATACCGGCATCATC
AACACCGGCGTACTCACTACAGCCCCTACCGCGCAGGCGGCGCTCTCCGC
CAACAACCAACAGTTCCAGCAAGTATTGGAGGCGCTCAACGCACAAGGAG
TCAACAGTAGTGATATACAGACCACTTTCTTTAGTGTCAACCCGCAATTT
CAATTCGGACCCAATGGCGAACAACAGGGCGTCATTAGCTACGAGGTCAA
CAATCAGGTGAATGTCATCGTGCGTGACCTGGACAACCTGGGTGCCATTC
TTGATGCCCTGGTTACGGCAGGGAGCAATACTGTGTCTGGTCTGAACTTC
AGGATTGAGGAAAATGCCGAGCTTCTCAGGCAGGCTCGCACAATGGCTGT
TGAAGAGGCTACGAGCCGTGCTAACGTTCTCGCGCAGGCGGCTGGAGTTC
AGGTTGGAAATATTATTACCATTAGCGACCAATCAATTCCACAACCTCAG
TTCGCCCCATCTGGAGCTTTTGGCGGGGTAGGTTCTGTTGTACCGATTGG
ACCTGGTCAGGTTGCTGTTGTTGTTACGGTCTTCGTTCAGTTTGAACTTG
TCGAGGTTTGA
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