Gcaud3703.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3703.t1
Unique NameGcaud3703.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length22
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_544_length_22540_cov_5.148158contigNODE_544_length_22540_cov_5.148158:2612..2843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3703Gcaud3703Gracilaria caudata M_176_S67 malegeneNODE_544_length_22540_cov_5.148158 2612..2843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3703.t1Gcaud3703.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_544_length_22540_cov_5.148158 2612..2843 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3703.t1.CDS1Gcaud3703.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_544_length_22540_cov_5.148158 2612..2617 +
Gcaud3703.t1.CDS2Gcaud3703.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_544_length_22540_cov_5.148158 2786..2843 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3703.t1.exon1Gcaud3703.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_544_length_22540_cov_5.148158 2612..2617 +
Gcaud3703.t1.exon2Gcaud3703.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_544_length_22540_cov_5.148158 2786..2843 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3703.t1.intron1Gcaud3703.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_544_length_22540_cov_5.148158 2618..2785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3703.t1.stop1Gcaud3703.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_544_length_22540_cov_5.148158 2841..2843 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3703.t1 ID=Gcaud3703.t1|Name=Gcaud3703.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=22bp
XDRASSLGPLRVTRNAIERLT*
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spliced messenger RNA

>Gcaud3703.t1 ID=Gcaud3703.t1|Name=Gcaud3703.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=64bp|location=Sequence derived from alignment at NODE_544_length_22540_cov_5.148158:2612..2843+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AGATCGAGCATCTTCCTTGGGTCCTTTGCGAGTGACAAGAAATGCTATCG
AACGCCTGACCTAG
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protein sequence of Gcaud3703.t1

>Gcaud3703.t1 ID=Gcaud3703.t1|Name=Gcaud3703.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=22bp
XDRASSLGPLRVTRNAIERLT*
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mRNA from alignment at NODE_544_length_22540_cov_5.148158:2612..2843+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3703.t1 ID=Gcaud3703.t1|Name=Gcaud3703.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=232bp|location=Sequence derived from alignment at NODE_544_length_22540_cov_5.148158:2612..2843+ (Gracilaria caudata M_176_S67 male)
AGATCGGTGCGTTTCTCTAATCGACATGGGAAACTTTTCCTGTTTCTCGT
CCCAACGAAGCTCCAGCACTGACAATGAAGTGTTCGTAACATTCTGCACC
GGCCCGTATCCCTCGACGTCTCACTCAATCATTGTGTCCGGTTCCCTCCT
CAATTTCTCATGATACAACCTCAGAGCATCTTCCTTGGGTCCTTTGCGAG
TGACAAGAAATGCTATCGAACGCCTGACCTAG
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Coding sequence (CDS) from alignment at NODE_544_length_22540_cov_5.148158:2612..2843+

>Gcaud3703.t1 ID=Gcaud3703.t1|Name=Gcaud3703.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=64bp|location=Sequence derived from alignment at NODE_544_length_22540_cov_5.148158:2612..2843+ (Gracilaria caudata M_176_S67 male)
AGATCGAGCATCTTCCTTGGGTCCTTTGCGAGTGACAAGAAATGCTATCG
AACGCCTGACCTAG
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