Gcaud3701.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3701.t1
Unique Name	Gcaud3701.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	657

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2321_length_6076_cov_5.112949	contig	NODE_2321_length_6076_cov_5.112949:85..2054 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3701	Gcaud3701	Gracilaria caudata M_176_S67 male	gene	NODE_2321_length_6076_cov_5.112949 85..2054 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3701.t1.CDS1	Gcaud3701.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2321_length_6076_cov_5.112949 85..2054 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3701.t1.exon1	Gcaud3701.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2321_length_6076_cov_5.112949 85..2054 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3701.t1.start1	Gcaud3701.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2321_length_6076_cov_5.112949 2052..2054 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3701.t1	Gcaud3701.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2321_length_6076_cov_5.112949 85..2054 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2321_length_6076_cov_5.112949:85..2054-
coding sequence from alignment at NODE_2321_length_6076_cov_5.112949:85..2054-

mRNA sequence

>Gcaud3701.t1 ID=Gcaud3701.t1|Name=Gcaud3701.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp
MVHTIESMFTNMSAIGGYVNDPTTLTQKSVTATEFDTFIDELIAEQEAIY
SLNSTQFPQMQSAITTYFDSTLTNERLKLKEEKDEADAAGIVSSACDVAS
IFLEEVPVLGFCLSAYAIGLLAAQLALESKISKLENTIIQDLTDADTTIR
STYSTAFSVYNSYSDNKDKSVVMIKKLYIGGDSGDAHETALGVVVSTKKY
NSGTATRAEVKSAFQDIYNADSDDSVSGYVHDVLSIHSKLHDIAAAGKNM
PSEATIQSALDSKMVNLPNGLVMYMSIANLSLGSFMAVKYSHIYDGIKAA
WRAIRNSTGKRIKVAIENDVPNTKEACSLNENGAKAPSTAEVDIGIAELS
SEENNAIRTLETVDEATKVEGVGAKVTKFFSVCMKGLVIIGGIASIVISI
LDAVNATNYDNTLKEQIESSKQKLINYYRTVLSANNTNVPDLPMTTTNTV
EKVMAFDANDWAQSIVGQFTWTSVSGSFSDNNGCMNSVTVNGVSTIDCGE
TDTYPVITTIYLCVGGPGAEFVKLEVYPNTTFFNYNSSTDSWDEVSDWTT
SKLSTTSNGNTYYWYKSDVLWYNIKSRDPAKGYFKATTARATSTTDKAKT
FSIWAYYADNTDLTVVPKAPFSDSHTLIEGKTSAQWGAGIFKQDITATDL
DWTESFX

spliced messenger RNA

>Gcaud3701.t1 ID=Gcaud3701.t1|Name=Gcaud3701.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1970bp|location=Sequence derived from alignment at NODE_2321_length_6076_cov_5.112949:85..2054- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCATACCATCGAATCCATGTTTACCAACATGTCCGCCATCGGCGG
CTACGTTAACGACCCGACCACGCTCACGCAGAAGTCGGTCACCGCCACCG
AATTTGACACGTTCATCGACGAGCTCATCGCCGAGCAAGAGGCCATCTAC
AGCCTCAATTCCACTCAATTCCCACAGATGCAGTCGGCAATTACCACCTA
CTTCGACTCTACCCTCACTAATGAGCGCCTCAAACTCAAGGAAGAGAAGG
ATGAGGCCGACGCGGCAGGTATCGTCTCTAGCGCTTGCGATGTGGCGTCC
ATTTTCCTCGAGGAAGTGCCTGTGCTTGGCTTCTGCCTCTCGGCCTACGC
AATTGGATTACTTGCCGCGCAGCTCGCCCTGGAGTCGAAAATCTCCAAAC
TCGAGAACACTATCATCCAGGATCTAACCGACGCCGACACCACCATCCGT
TCGACTTACTCAACAGCGTTCTCGGTTTATAACAGCTACTCGGACAACAA
GGACAAGAGCGTCGTCATGATCAAGAAGCTCTACATCGGCGGCGACTCTG
GCGACGCCCACGAGACCGCCCTCGGCGTCGTTGTCTCGACCAAGAAGTAC
AACAGTGGAACGGCCACTAGGGCAGAGGTCAAGAGCGCGTTCCAGGATAT
CTACAACGCCGACAGCGACGACTCAGTCTCCGGTTATGTGCACGATGTCC
TCTCCATCCACAGCAAGCTCCACGACATAGCCGCCGCCGGGAAGAACATG
CCATCTGAGGCGACGATCCAGTCGGCGCTCGATAGCAAGATGGTCAATCT
GCCGAACGGTCTCGTCATGTACATGTCAATCGCCAACCTCAGCCTCGGAT
CTTTCATGGCTGTTAAGTACTCGCACATCTACGACGGAATCAAGGCAGCC
TGGCGGGCCATCCGTAATTCTACCGGGAAGAGGATTAAAGTGGCTATAGA
GAACGACGTCCCCAACACGAAGGAAGCGTGCTCCCTGAACGAGAATGGCG
CCAAGGCTCCGAGTACGGCGGAGGTCGATATCGGCATAGCGGAACTATCG
AGCGAGGAGAACAATGCTATCAGAACGCTGGAGACGGTCGACGAGGCCAC
AAAGGTCGAGGGCGTCGGGGCGAAAGTGACAAAGTTCTTCTCGGTCTGCA
TGAAGGGTCTCGTCATCATCGGAGGTATTGCGTCGATCGTCATCAGCATC
CTGGACGCCGTAAACGCGACGAACTACGACAATACGCTCAAGGAGCAGAT
CGAGTCATCAAAGCAGAAGTTGATCAACTACTACCGCACTGTCCTGTCAG
CGAACAACACCAACGTGCCGGACCTGCCCATGACGACGACGAATACCGTA
GAGAAGGTGATGGCGTTTGATGCTAACGACTGGGCGCAGAGCATCGTGGG
GCAGTTCACGTGGACGTCGGTCAGCGGCTCGTTCTCCGATAATAACGGCT
GTATGAACAGTGTGACCGTCAACGGCGTATCGACGATCGATTGCGGCGAG
ACAGATACTTACCCCGTGATCACGACTATCTATCTGTGTGTTGGAGGGCC
TGGGGCGGAATTTGTGAAGTTGGAAGTGTACCCGAACACGACGTTCTTCA
ACTACAACAGCAGCACGGACAGCTGGGACGAGGTGTCGGACTGGACGACC
TCTAAATTGAGCACGACATCCAACGGTAACACTTATTACTGGTACAAGAG
CGACGTGCTGTGGTACAACATCAAGTCGAGAGACCCGGCGAAGGGCTACT
TCAAGGCGACGACCGCGCGAGCGACATCGACCACTGACAAGGCCAAAACT
TTCTCCATTTGGGCTTACTACGCGGACAATACGGACCTGACGGTGGTACC
GAAGGCGCCTTTCTCCGACAGTCACACACTGATCGAGGGCAAGACGTCGG
CCCAATGGGGCGCGGGGATATTTAAGCAGGACATCACCGCCACAGACCTC
GACTGGACCGAAAGCTTCAA

protein sequence of Gcaud3701.t1

>Gcaud3701.t1 ID=Gcaud3701.t1|Name=Gcaud3701.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=657bp
MVHTIESMFTNMSAIGGYVNDPTTLTQKSVTATEFDTFIDELIAEQEAIY
SLNSTQFPQMQSAITTYFDSTLTNERLKLKEEKDEADAAGIVSSACDVAS
IFLEEVPVLGFCLSAYAIGLLAAQLALESKISKLENTIIQDLTDADTTIR
STYSTAFSVYNSYSDNKDKSVVMIKKLYIGGDSGDAHETALGVVVSTKKY
NSGTATRAEVKSAFQDIYNADSDDSVSGYVHDVLSIHSKLHDIAAAGKNM
PSEATIQSALDSKMVNLPNGLVMYMSIANLSLGSFMAVKYSHIYDGIKAA
WRAIRNSTGKRIKVAIENDVPNTKEACSLNENGAKAPSTAEVDIGIAELS
SEENNAIRTLETVDEATKVEGVGAKVTKFFSVCMKGLVIIGGIASIVISI
LDAVNATNYDNTLKEQIESSKQKLINYYRTVLSANNTNVPDLPMTTTNTV
EKVMAFDANDWAQSIVGQFTWTSVSGSFSDNNGCMNSVTVNGVSTIDCGE
TDTYPVITTIYLCVGGPGAEFVKLEVYPNTTFFNYNSSTDSWDEVSDWTT
SKLSTTSNGNTYYWYKSDVLWYNIKSRDPAKGYFKATTARATSTTDKAKT
FSIWAYYADNTDLTVVPKAPFSDSHTLIEGKTSAQWGAGIFKQDITATDL
DWTESFX

mRNA from alignment at NODE_2321_length_6076_cov_5.112949:85..2054-

Legend: CDSpolypeptideexonstart_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3701.t1 ID=Gcaud3701.t1|Name=Gcaud3701.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1970bp|location=Sequence derived from alignment at NODE_2321_length_6076_cov_5.112949:85..2054- (Gracilaria caudata M_176_S67 male)
ATGGTCCATACCATCGAATCCATGTTTACCAACATGTCCGCCATCGGCGG
CTACGTTAACGACCCGACCACGCTCACGCAGAAGTCGGTCACCGCCACCG
AATTTGACACGTTCATCGACGAGCTCATCGCCGAGCAAGAGGCCATCTAC
AGCCTCAATTCCACTCAATTCCCACAGATGCAGTCGGCAATTACCACCTA
CTTCGACTCTACCCTCACTAATGAGCGCCTCAAACTCAAGGAAGAGAAGG
ATGAGGCCGACGCGGCAGGTATCGTCTCTAGCGCTTGCGATGTGGCGTCC
ATTTTCCTCGAGGAAGTGCCTGTGCTTGGCTTCTGCCTCTCGGCCTACGC
AATTGGATTACTTGCCGCGCAGCTCGCCCTGGAGTCGAAAATCTCCAAAC
TCGAGAACACTATCATCCAGGATCTAACCGACGCCGACACCACCATCCGT
TCGACTTACTCAACAGCGTTCTCGGTTTATAACAGCTACTCGGACAACAA
GGACAAGAGCGTCGTCATGATCAAGAAGCTCTACATCGGCGGCGACTCTG
GCGACGCCCACGAGACCGCCCTCGGCGTCGTTGTCTCGACCAAGAAGTAC
AACAGTGGAACGGCCACTAGGGCAGAGGTCAAGAGCGCGTTCCAGGATAT
CTACAACGCCGACAGCGACGACTCAGTCTCCGGTTATGTGCACGATGTCC
TCTCCATCCACAGCAAGCTCCACGACATAGCCGCCGCCGGGAAGAACATG
CCATCTGAGGCGACGATCCAGTCGGCGCTCGATAGCAAGATGGTCAATCT
GCCGAACGGTCTCGTCATGTACATGTCAATCGCCAACCTCAGCCTCGGAT
CTTTCATGGCTGTTAAGTACTCGCACATCTACGACGGAATCAAGGCAGCC
TGGCGGGCCATCCGTAATTCTACCGGGAAGAGGATTAAAGTGGCTATAGA
GAACGACGTCCCCAACACGAAGGAAGCGTGCTCCCTGAACGAGAATGGCG
CCAAGGCTCCGAGTACGGCGGAGGTCGATATCGGCATAGCGGAACTATCG
AGCGAGGAGAACAATGCTATCAGAACGCTGGAGACGGTCGACGAGGCCAC
AAAGGTCGAGGGCGTCGGGGCGAAAGTGACAAAGTTCTTCTCGGTCTGCA
TGAAGGGTCTCGTCATCATCGGAGGTATTGCGTCGATCGTCATCAGCATC
CTGGACGCCGTAAACGCGACGAACTACGACAATACGCTCAAGGAGCAGAT
CGAGTCATCAAAGCAGAAGTTGATCAACTACTACCGCACTGTCCTGTCAG
CGAACAACACCAACGTGCCGGACCTGCCCATGACGACGACGAATACCGTA
GAGAAGGTGATGGCGTTTGATGCTAACGACTGGGCGCAGAGCATCGTGGG
GCAGTTCACGTGGACGTCGGTCAGCGGCTCGTTCTCCGATAATAACGGCT
GTATGAACAGTGTGACCGTCAACGGCGTATCGACGATCGATTGCGGCGAG
ACAGATACTTACCCCGTGATCACGACTATCTATCTGTGTGTTGGAGGGCC
TGGGGCGGAATTTGTGAAGTTGGAAGTGTACCCGAACACGACGTTCTTCA
ACTACAACAGCAGCACGGACAGCTGGGACGAGGTGTCGGACTGGACGACC
TCTAAATTGAGCACGACATCCAACGGTAACACTTATTACTGGTACAAGAG
CGACGTGCTGTGGTACAACATCAAGTCGAGAGACCCGGCGAAGGGCTACT
TCAAGGCGACGACCGCGCGAGCGACATCGACCACTGACAAGGCCAAAACT
TTCTCCATTTGGGCTTACTACGCGGACAATACGGACCTGACGGTGGTACC
GAAGGCGCCTTTCTCCGACAGTCACACACTGATCGAGGGCAAGACGTCGG
CCCAATGGGGCGCGGGGATATTTAAGCAGGACATCACCGCCACAGACCTC
GACTGGACCGAAAGCTTCAA

Coding sequence (CDS) from alignment at NODE_2321_length_6076_cov_5.112949:85..2054-

>Gcaud3701.t1 ID=Gcaud3701.t1|Name=Gcaud3701.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1970bp|location=Sequence derived from alignment at NODE_2321_length_6076_cov_5.112949:85..2054- (Gracilaria caudata M_176_S67 male)
ATGGTCCATACCATCGAATCCATGTTTACCAACATGTCCGCCATCGGCGG
CTACGTTAACGACCCGACCACGCTCACGCAGAAGTCGGTCACCGCCACCG
AATTTGACACGTTCATCGACGAGCTCATCGCCGAGCAAGAGGCCATCTAC
AGCCTCAATTCCACTCAATTCCCACAGATGCAGTCGGCAATTACCACCTA
CTTCGACTCTACCCTCACTAATGAGCGCCTCAAACTCAAGGAAGAGAAGG
ATGAGGCCGACGCGGCAGGTATCGTCTCTAGCGCTTGCGATGTGGCGTCC
ATTTTCCTCGAGGAAGTGCCTGTGCTTGGCTTCTGCCTCTCGGCCTACGC
AATTGGATTACTTGCCGCGCAGCTCGCCCTGGAGTCGAAAATCTCCAAAC
TCGAGAACACTATCATCCAGGATCTAACCGACGCCGACACCACCATCCGT
TCGACTTACTCAACAGCGTTCTCGGTTTATAACAGCTACTCGGACAACAA
GGACAAGAGCGTCGTCATGATCAAGAAGCTCTACATCGGCGGCGACTCTG
GCGACGCCCACGAGACCGCCCTCGGCGTCGTTGTCTCGACCAAGAAGTAC
AACAGTGGAACGGCCACTAGGGCAGAGGTCAAGAGCGCGTTCCAGGATAT
CTACAACGCCGACAGCGACGACTCAGTCTCCGGTTATGTGCACGATGTCC
TCTCCATCCACAGCAAGCTCCACGACATAGCCGCCGCCGGGAAGAACATG
CCATCTGAGGCGACGATCCAGTCGGCGCTCGATAGCAAGATGGTCAATCT
GCCGAACGGTCTCGTCATGTACATGTCAATCGCCAACCTCAGCCTCGGAT
CTTTCATGGCTGTTAAGTACTCGCACATCTACGACGGAATCAAGGCAGCC
TGGCGGGCCATCCGTAATTCTACCGGGAAGAGGATTAAAGTGGCTATAGA
GAACGACGTCCCCAACACGAAGGAAGCGTGCTCCCTGAACGAGAATGGCG
CCAAGGCTCCGAGTACGGCGGAGGTCGATATCGGCATAGCGGAACTATCG
AGCGAGGAGAACAATGCTATCAGAACGCTGGAGACGGTCGACGAGGCCAC
AAAGGTCGAGGGCGTCGGGGCGAAAGTGACAAAGTTCTTCTCGGTCTGCA
TGAAGGGTCTCGTCATCATCGGAGGTATTGCGTCGATCGTCATCAGCATC
CTGGACGCCGTAAACGCGACGAACTACGACAATACGCTCAAGGAGCAGAT
CGAGTCATCAAAGCAGAAGTTGATCAACTACTACCGCACTGTCCTGTCAG
CGAACAACACCAACGTGCCGGACCTGCCCATGACGACGACGAATACCGTA
GAGAAGGTGATGGCGTTTGATGCTAACGACTGGGCGCAGAGCATCGTGGG
GCAGTTCACGTGGACGTCGGTCAGCGGCTCGTTCTCCGATAATAACGGCT
GTATGAACAGTGTGACCGTCAACGGCGTATCGACGATCGATTGCGGCGAG
ACAGATACTTACCCCGTGATCACGACTATCTATCTGTGTGTTGGAGGGCC
TGGGGCGGAATTTGTGAAGTTGGAAGTGTACCCGAACACGACGTTCTTCA
ACTACAACAGCAGCACGGACAGCTGGGACGAGGTGTCGGACTGGACGACC
TCTAAATTGAGCACGACATCCAACGGTAACACTTATTACTGGTACAAGAG
CGACGTGCTGTGGTACAACATCAAGTCGAGAGACCCGGCGAAGGGCTACT
TCAAGGCGACGACCGCGCGAGCGACATCGACCACTGACAAGGCCAAAACT
TTCTCCATTTGGGCTTACTACGCGGACAATACGGACCTGACGGTGGTACC
GAAGGCGCCTTTCTCCGACAGTCACACACTGATCGAGGGCAAGACGTCGG
CCCAATGGGGCGCGGGGATATTTAAGCAGGACATCACCGCCACAGACCTC
GACTGGACCGAAAGCTTCAA