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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 115417.EPrPW00000014522 |
| PFAMs | Mito_carr |
| Max annot lvl | 121069|Pythiales |
| Evalue | 2.12e-169 |
| EggNOG OGs | KOG0767@1|root,KOG0767@2759|Eukaryota,1MF48@121069|Pythiales |
| Description | Mitochondrial Carrier (MC) Family. Source PGD |
| COG category | C |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3697.t1.start1 | Gcaud3697.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_277_length_32544_cov_4.366438 10695..10697 + |
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud3697.t1.stop1 | Gcaud3697.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_277_length_32544_cov_4.366438 12769..12771 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud3697.t1 ID=Gcaud3697.t1|Name=Gcaud3697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=381bp
LQRYHSLGYPTDFKMAFNSPLYERAAAASDGLASAVYTYPNSSFFRRTTN
PTYTALARTSPFTKIVASSVAEGEKWDSRWSHNPPHTNSYYVKCMIGGSL
ACGLTHAAVTPLDVTKCNMQVDPKKYNGLASGLRILVAEEGTKGMWKGWL
PTLIGYSMQGLFKFGLYEYFKDMYSTMVGQEKAKKYQGLIYCLGSASAEF
FADIALCPMEMVKVKVQTAPPGTWPIAFGPALAKMSANAAETRFPFGSLV
PLWSRQIPYTVCKFYFFEKAVQMFYTHVFTEPRESYSKNAQLGITFLSGY
TAGIACAIVSHPADSIISQIGKAENKGKSIGAIASEVGFMNLMTRGLSTR
IIMIGTLTGLQWWIYDTFKTLSGLGTSGGK* back to topspliced messenger RNA >Gcaud3697.t1 ID=Gcaud3697.t1|Name=Gcaud3697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at NODE_277_length_32544_cov_4.366438:10695..12771+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
CTGCAGCGATATCACAGTCTGGGATACCCCACCGATTTCAAAATGGCTTT
CAATTCACCGCTTTACGAACGAGCCGCCGCGGCCAGCGACGGTCTTGCTT
CCGCTGTCTACACGTACCCGAACTCCTCGTTCTTCAGACGTACCACTAAC
CCCACTTACACCGCACTTGCTCGTACTTCCCCATTCACCAAGATCGTTGC
TTCTTCGGTTGCCGAAGGTGAAAAATGGGACTCTAGATGGTCTCACAATC
CCCCGCATACCAACTCATATTATGTCAAATGTATGATCGGTGGGTCTTTG
GCGTGCGGTCTTACGCATGCCGCCGTAACTCCGCTTGATGTCACCAAGTG
CAATATGCAGGTTGACCCCAAGAAGTACAATGGGCTTGCGTCCGGTCTCC
GCATCCTCGTTGCCGAGGAAGGTACCAAAGGAATGTGGAAGGGTTGGTTG
CCGACTCTCATCGGGTATTCCATGCAAGGTCTCTTTAAGTTTGGTCTCTA
CGAATACTTCAAGGATATGTACAGCACAATGGTCGGGCAGGAGAAGGCCA
AGAAGTACCAAGGCTTAATCTACTGCCTGGGATCTGCTTCTGCCGAGTTC
TTTGCCGATATTGCTCTTTGCCCTATGGAGATGGTCAAGGTCAAGGTTCA
GACTGCACCTCCAGGCACCTGGCCGATTGCGTTTGGTCCAGCCCTTGCTA
AAATGTCGGCCAACGCCGCTGAAACTCGATTCCCATTCGGGTCCCTCGTC
CCACTTTGGAGTCGCCAAATCCCGTACACTGTGTGCAAATTCTATTTCTT
CGAGAAGGCCGTGCAAATGTTCTACACGCACGTCTTCACCGAGCCCAGAG
AGTCGTACTCGAAGAACGCCCAACTCGGTATTACTTTCCTTTCCGGTTAC
ACTGCTGGTATTGCCTGCGCTATTGTATCTCACCCGGCGGACTCCATCAT
TTCTCAGATTGGTAAGGCCGAGAACAAGGGCAAGTCTATAGGCGCGATTG
CGTCGGAAGTCGGCTTCATGAACCTCATGACTCGCGGCCTCTCCACGCGT
ATTATTATGATCGGTACTTTGACTGGTCTACAGTGGTGGATTTATGACAC
GTTCAAGACACTTTCAGGTCTTGGAACAAGCGGAGGCAAGTAA back to topprotein sequence of Gcaud3697.t1 >Gcaud3697.t1 ID=Gcaud3697.t1|Name=Gcaud3697.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=381bp
LQRYHSLGYPTDFKMAFNSPLYERAAAASDGLASAVYTYPNSSFFRRTTN
PTYTALARTSPFTKIVASSVAEGEKWDSRWSHNPPHTNSYYVKCMIGGSL
ACGLTHAAVTPLDVTKCNMQVDPKKYNGLASGLRILVAEEGTKGMWKGWL
PTLIGYSMQGLFKFGLYEYFKDMYSTMVGQEKAKKYQGLIYCLGSASAEF
FADIALCPMEMVKVKVQTAPPGTWPIAFGPALAKMSANAAETRFPFGSLV
PLWSRQIPYTVCKFYFFEKAVQMFYTHVFTEPRESYSKNAQLGITFLSGY
TAGIACAIVSHPADSIISQIGKAENKGKSIGAIASEVGFMNLMTRGLSTR
IIMIGTLTGLQWWIYDTFKTLSGLGTSGGK* back to topmRNA from alignment at NODE_277_length_32544_cov_4.366438:10695..12771+ Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud3697.t1 ID=Gcaud3697.t1|Name=Gcaud3697.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2077bp|location=Sequence derived from alignment at NODE_277_length_32544_cov_4.366438:10695..12771+ (Gracilaria caudata M_176_S67 male)
CTGGTAACGTTTCATCAACTCATATAGCGTTAGGTAGTTGGAATGCGGAA
TGGTAATGTCTAACAGCCGAAGTCAATTATGCTGCTCTGTACGTCGGATA
ACTGGGCTACTTTAAACGTGTTTCATTTGCAACATGAACTCATGTGCGCG
AACTCTCTTTGTGAATGCTTTTCACGACATTTCTCGAATTACTTGAATCG
CACGTAGCAGCGATATCACAGTCTGGGATACCGTCGTACAACTTTGCTGG
AGACGATCAATTCAGTGCCGTAGTTCTCGTCGTAAGAAACATCGACGGAT
ACGTTACAAGGGTTCCCCTTCCGAGTGCCGATGAGGCTCCACGCAGAAAC
GTCAGACTGAACTCACAGGAATCTTGATCTTTGGACCCAAAACCAGTCGA
AATGAAGTTCGCTAAGAAGGTCAAGTGTATTGCCCTTGACGGTCGACGCT
CGAACAGCAAGAGCTACAGGCTACGAACGGTGTTCTATCCCTTTTGACCC
GTACCGAACTTTCTCACAGATTCCAATCAGTCGCTGATTGGTCAACGTGT
ATGGCGCGGGATACTTGGCGTGTAATGGTTGCTTGATTGATGAACGCTGC
TTTTCATCGGACGTGACGCGATCCAATCAACGCGCGACACCGGGCCACGT
GGCCTTTTAACGACCAGCGTGTGAAGCTGGCGTGGACCGCCAAAATGCGC
CGGTGGATGTTCGTGGTCGTCAACGAACAAAGCTGGGCCAAGCCGCCACG
GCGAACTGAAGCGGCAATCTGATTCAGCACCCAAAATCCTCAACCAAACA
GCTCCTCTACAGCTGTCTACCGTTGGCCCTCCACAGCCACCGATGTAAGT
CTGCCGATCGCAGTCATCCTCCCTCGGATCGTCACCCCATTTGCCTTCGC
ATTCAGCATCCCCCATCGCTTCGATCCAACTGTCTTCTTGCTCACCTCCC
GTTGTGTTCTGCGTACATAGTTCAAAATGGCTTTCAATTCACCGCTTTAC
GAACGAGCCGCCGCGGCCAGCGACGGTCTTGCTTCCGCTGTCTACACGTA
CCCGAACTCCTCGTTCTTCAGACGTACCACTAACCCCACTTACACCGCAC
TTGCTCGTACTTCCCCATTCACCAAGATCGTTGCTTCTTCGGTTGCCGAA
GGTGAAAAATGGGACTCTAGATGGTCTCACAATCCCCCGCATACCAACTC
ATATTATGTCAAATGTATGATCGGTGGGTCTTTGGCGTGCGGTCTTACGC
ATGCCGCCGTAACTCCGCTTGATGTCACCAAGTGCAATATGCAGGTTGAC
CCCAAGAAGTACAATGGGCTTGCGTCCGGTCTCCGCATCCTCGTTGCCGA
GGAAGGTACCAAAGGAATGTGGAAGGGTTGGTTGCCGACTCTCATCGGGT
ATTCCATGCAAGGTCTCTTTAAGTTTGGTCTCTACGAATACTTCAAGGAT
ATGTACAGCACAATGGTCGGGCAGGAGAAGGCCAAGAAGTACCAAGGCTT
AATCTACTGCCTGGGATCTGCTTCTGCCGAGTTCTTTGCCGATATTGCTC
TTTGCCCTATGGAGATGGTCAAGGTCAAGGTTCAGACTGCACCTCCAGGC
ACCTGGCCGATTGCGTTTGGTCCAGCCCTTGCTAAAATGTCGGCCAACGC
CGCTGAAACTCGATTCCCATTCGGGTCCCTCGTCCCACTTTGGAGTCGCC
AAATCCCGTACACTGTGTGCAAATTCTATTTCTTCGAGAAGGCCGTGCAA
ATGTTCTACACGCACGTCTTCACCGAGCCCAGAGAGTCGTACTCGAAGAA
CGCCCAACTCGGTATTACTTTCCTTTCCGGTTACACTGCTGGTATTGCCT
GCGCTATTGTATCTCACCCGGCGGACTCCATCATTTCTCAGATTGGTAAG
GCCGAGAACAAGGGCAAGTCTATAGGCGCGATTGCGTCGGAAGTCGGCTT
CATGAACCTCATGACTCGCGGCCTCTCCACGCGTATTATTATGATCGGTA
CTTTGACTGGTCTACAGTGGTGGATTTATGACACGTTCAAGACACTTTCA
GGTCTTGGAACAAGCGGAGGCAAGTAA back to topCoding sequence (CDS) from alignment at NODE_277_length_32544_cov_4.366438:10695..12771+ >Gcaud3697.t1 ID=Gcaud3697.t1|Name=Gcaud3697.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1143bp|location=Sequence derived from alignment at NODE_277_length_32544_cov_4.366438:10695..12771+ (Gracilaria caudata M_176_S67 male)
CTGCAGCGATATCACAGTCTGGGATACCCCACCGATTTCAAAATGGCTTT
CAATTCACCGCTTTACGAACGAGCCGCCGCGGCCAGCGACGGTCTTGCTT
CCGCTGTCTACACGTACCCGAACTCCTCGTTCTTCAGACGTACCACTAAC
CCCACTTACACCGCACTTGCTCGTACTTCCCCATTCACCAAGATCGTTGC
TTCTTCGGTTGCCGAAGGTGAAAAATGGGACTCTAGATGGTCTCACAATC
CCCCGCATACCAACTCATATTATGTCAAATGTATGATCGGTGGGTCTTTG
GCGTGCGGTCTTACGCATGCCGCCGTAACTCCGCTTGATGTCACCAAGTG
CAATATGCAGGTTGACCCCAAGAAGTACAATGGGCTTGCGTCCGGTCTCC
GCATCCTCGTTGCCGAGGAAGGTACCAAAGGAATGTGGAAGGGTTGGTTG
CCGACTCTCATCGGGTATTCCATGCAAGGTCTCTTTAAGTTTGGTCTCTA
CGAATACTTCAAGGATATGTACAGCACAATGGTCGGGCAGGAGAAGGCCA
AGAAGTACCAAGGCTTAATCTACTGCCTGGGATCTGCTTCTGCCGAGTTC
TTTGCCGATATTGCTCTTTGCCCTATGGAGATGGTCAAGGTCAAGGTTCA
GACTGCACCTCCAGGCACCTGGCCGATTGCGTTTGGTCCAGCCCTTGCTA
AAATGTCGGCCAACGCCGCTGAAACTCGATTCCCATTCGGGTCCCTCGTC
CCACTTTGGAGTCGCCAAATCCCGTACACTGTGTGCAAATTCTATTTCTT
CGAGAAGGCCGTGCAAATGTTCTACACGCACGTCTTCACCGAGCCCAGAG
AGTCGTACTCGAAGAACGCCCAACTCGGTATTACTTTCCTTTCCGGTTAC
ACTGCTGGTATTGCCTGCGCTATTGTATCTCACCCGGCGGACTCCATCAT
TTCTCAGATTGGTAAGGCCGAGAACAAGGGCAAGTCTATAGGCGCGATTG
CGTCGGAAGTCGGCTTCATGAACCTCATGACTCGCGGCCTCTCCACGCGT
ATTATTATGATCGGTACTTTGACTGGTCTACAGTGGTGGATTTATGACAC
GTTCAAGACACTTTCAGGTCTTGGAACAAGCGGAGGCAAGTAA back to top
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