Gcaud3695.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3695.t1
Unique Name	Gcaud3695.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	653

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_277_length_32544_cov_4.366438	contig	NODE_277_length_32544_cov_4.366438:197..2155 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3695	Gcaud3695	Gracilaria caudata M_176_S67 male	gene	NODE_277_length_32544_cov_4.366438 197..2155 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3695.t1.stop1	Gcaud3695.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_277_length_32544_cov_4.366438 197..199 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3695.t1.CDS1	Gcaud3695.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_277_length_32544_cov_4.366438 197..2155 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3695.t1.exon1	Gcaud3695.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_277_length_32544_cov_4.366438 197..2155 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3695.t1.start1	Gcaud3695.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_277_length_32544_cov_4.366438 2153..2155 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3695.t1	Gcaud3695.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_277_length_32544_cov_4.366438 197..2155 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_277_length_32544_cov_4.366438:197..2155-
coding sequence from alignment at NODE_277_length_32544_cov_4.366438:197..2155-

mRNA sequence

>Gcaud3695.t1 ID=Gcaud3695.t1|Name=Gcaud3695.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=653bp
MAEVCVFLLEALVGVVLDRVFNQYDTTALIDEVEKLQSTVVDLQHQVLAL
EKVITQFTDKVPDEVVRFRRVREKTHFHLRDFDPTLIDFATELVASLLNG
LALGFQLKVHATKKALNRGRAFEARDFEVVLGASKTVLDNVLVLKRLFNA
ITEYVDFQAVSRLEKPTITLNMVCGSTIEFKALELMRYRISLRLHRISTM
ALNWSTSCLGTLELNDVLFGKHDEYLSKFVNNTQMDSNVQVECFPRVFWS
NEYKQLTDVLRSTVKDSVSCFRVLILSFDNWITSDAAEYHGFSSKIRTFV
SGRATRCVEVKLKDYSHWDHINLEQILFWGLSMSVVVFRFCTPEHLALML
EASTQITLKYPGLIEDVQRVLYVETSSTDNVGDVRQNIKDVAVRKRMLEP
RDEEDILFEKSYGSVEEMMEYIRGRGKGIRSIINNDVKGESRDLMISIAR
ILNHELTEDEAMDDTQAVVKFASKIRENAMSSKIDLYRDKKEMVLSNGDY
NTGFLPHIAHHVRDSEYEDFRSVPKHSTMHLRLTIRMYGVDRVWQHCWCR
KWKAFKDALELVQAEQLFLTTVFEEKNTMRKCNVGSAGPIVSRVSVFAMG
GGDRDDYLHARLQQCVMRLSELERKEAGWAALRVLLKLIPELVEFCRKPK
DT*

spliced messenger RNA

>Gcaud3695.t1 ID=Gcaud3695.t1|Name=Gcaud3695.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1959bp|location=Sequence derived from alignment at NODE_277_length_32544_cov_4.366438:197..2155- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGGTTTGCGTCTTCTTGTTGGAGGCGCTTGTCGGTGTGGTTCT
CGATCGAGTTTTCAACCAATATGATACTACAGCTCTCATCGATGAAGTCG
AAAAACTACAGAGCACTGTCGTAGATTTACAACACCAAGTTTTGGCTCTG
GAAAAGGTCATCACACAATTCACGGACAAAGTACCAGACGAGGTAGTTCG
TTTTCGTAGAGTTCGAGAAAAGACTCACTTTCATTTGAGGGATTTTGATC
CCACGCTAATCGACTTTGCTACGGAACTCGTGGCATCATTGCTCAACGGT
CTCGCTTTAGGATTTCAGCTCAAAGTTCACGCAACAAAGAAGGCCCTTAA
TCGAGGAAGGGCTTTCGAGGCACGCGACTTTGAAGTGGTGTTGGGAGCAA
GCAAAACCGTGCTTGACAACGTCTTGGTCCTGAAACGATTGTTCAACGCA
ATAACAGAGTATGTGGACTTCCAAGCAGTTTCCCGACTTGAAAAGCCAAC
GATTACGTTGAACATGGTATGTGGAAGTACTATTGAGTTCAAAGCTCTCG
AGCTCATGAGGTATCGAATTTCATTACGATTGCATAGAATCAGTACAATG
GCGTTAAATTGGAGCACCTCATGTTTGGGTACGCTCGAGCTCAACGATGT
ACTTTTCGGGAAACATGATGAGTATTTGAGCAAGTTTGTGAACAACACCC
AAATGGATTCCAATGTTCAAGTGGAATGCTTCCCCCGCGTATTCTGGTCA
AATGAGTACAAACAGCTCACAGATGTGCTGAGGAGCACTGTTAAGGATTC
AGTGTCGTGTTTCCGAGTGCTTATTCTGTCCTTCGATAACTGGATCACCA
GCGATGCCGCGGAGTATCACGGTTTCTCGTCTAAGATACGAACTTTTGTT
TCAGGGAGAGCTACTCGATGTGTGGAAGTAAAACTGAAAGACTACTCTCA
TTGGGATCACATCAACCTTGAACAGATTCTTTTCTGGGGCCTGTCAATGA
GCGTGGTTGTTTTCCGATTTTGCACTCCAGAACATCTGGCTCTCATGCTA
GAGGCAAGTACACAGATTACCCTAAAATATCCTGGCCTAATAGAGGACGT
GCAGCGTGTGTTGTATGTGGAGACTTCGTCGACAGACAATGTGGGTGATG
TACGACAAAATATTAAGGACGTTGCTGTGAGGAAACGTATGTTAGAGCCT
AGAGATGAGGAAGACATCCTGTTCGAGAAAAGTTATGGTTCGGTTGAGGA
AATGATGGAATATATCAGAGGAAGAGGAAAAGGCATAAGAAGCATCATCA
ATAACGATGTGAAAGGTGAATCGCGTGATCTGATGATTTCGATTGCACGT
ATACTCAATCACGAGTTAACTGAAGACGAAGCAATGGACGACACCCAAGC
AGTGGTGAAGTTCGCGTCGAAAATCAGAGAAAACGCTATGTCGTCGAAGA
TTGATTTGTACAGGGACAAAAAGGAAATGGTGTTGTCCAATGGTGATTAC
AACACAGGGTTCTTACCGCACATTGCGCACCATGTACGTGATAGCGAGTA
CGAGGACTTTCGCAGCGTACCCAAGCACAGTACAATGCATCTCAGATTAA
CTATTCGAATGTATGGAGTGGATCGCGTGTGGCAACATTGTTGGTGCAGA
AAATGGAAGGCTTTCAAGGATGCTCTTGAACTGGTTCAAGCCGAACAACT
TTTCTTGACGACTGTTTTCGAAGAGAAGAATACGATGAGGAAATGTAACG
TGGGGTCTGCAGGGCCAATTGTTTCGCGAGTATCGGTATTTGCAATGGGT
GGTGGTGATAGGGACGATTACCTTCATGCGAGACTGCAGCAATGTGTGAT
GAGACTCAGCGAACTGGAGAGGAAGGAGGCAGGATGGGCAGCTTTGCGGG
TTCTTCTCAAACTTATTCCAGAGCTGGTGGAATTTTGCAGAAAGCCAAAA
GACACATGA

protein sequence of Gcaud3695.t1

>Gcaud3695.t1 ID=Gcaud3695.t1|Name=Gcaud3695.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=653bp
MAEVCVFLLEALVGVVLDRVFNQYDTTALIDEVEKLQSTVVDLQHQVLAL
EKVITQFTDKVPDEVVRFRRVREKTHFHLRDFDPTLIDFATELVASLLNG
LALGFQLKVHATKKALNRGRAFEARDFEVVLGASKTVLDNVLVLKRLFNA
ITEYVDFQAVSRLEKPTITLNMVCGSTIEFKALELMRYRISLRLHRISTM
ALNWSTSCLGTLELNDVLFGKHDEYLSKFVNNTQMDSNVQVECFPRVFWS
NEYKQLTDVLRSTVKDSVSCFRVLILSFDNWITSDAAEYHGFSSKIRTFV
SGRATRCVEVKLKDYSHWDHINLEQILFWGLSMSVVVFRFCTPEHLALML
EASTQITLKYPGLIEDVQRVLYVETSSTDNVGDVRQNIKDVAVRKRMLEP
RDEEDILFEKSYGSVEEMMEYIRGRGKGIRSIINNDVKGESRDLMISIAR
ILNHELTEDEAMDDTQAVVKFASKIRENAMSSKIDLYRDKKEMVLSNGDY
NTGFLPHIAHHVRDSEYEDFRSVPKHSTMHLRLTIRMYGVDRVWQHCWCR
KWKAFKDALELVQAEQLFLTTVFEEKNTMRKCNVGSAGPIVSRVSVFAMG
GGDRDDYLHARLQQCVMRLSELERKEAGWAALRVLLKLIPELVEFCRKPK
DT*

mRNA from alignment at NODE_277_length_32544_cov_4.366438:197..2155-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3695.t1 ID=Gcaud3695.t1|Name=Gcaud3695.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1959bp|location=Sequence derived from alignment at NODE_277_length_32544_cov_4.366438:197..2155- (Gracilaria caudata M_176_S67 male)
ATGGCTGAGGTTTGCGTCTTCTTGTTGGAGGCGCTTGTCGGTGTGGTTCT
CGATCGAGTTTTCAACCAATATGATACTACAGCTCTCATCGATGAAGTCG
AAAAACTACAGAGCACTGTCGTAGATTTACAACACCAAGTTTTGGCTCTG
GAAAAGGTCATCACACAATTCACGGACAAAGTACCAGACGAGGTAGTTCG
TTTTCGTAGAGTTCGAGAAAAGACTCACTTTCATTTGAGGGATTTTGATC
CCACGCTAATCGACTTTGCTACGGAACTCGTGGCATCATTGCTCAACGGT
CTCGCTTTAGGATTTCAGCTCAAAGTTCACGCAACAAAGAAGGCCCTTAA
TCGAGGAAGGGCTTTCGAGGCACGCGACTTTGAAGTGGTGTTGGGAGCAA
GCAAAACCGTGCTTGACAACGTCTTGGTCCTGAAACGATTGTTCAACGCA
ATAACAGAGTATGTGGACTTCCAAGCAGTTTCCCGACTTGAAAAGCCAAC
GATTACGTTGAACATGGTATGTGGAAGTACTATTGAGTTCAAAGCTCTCG
AGCTCATGAGGTATCGAATTTCATTACGATTGCATAGAATCAGTACAATG
GCGTTAAATTGGAGCACCTCATGTTTGGGTACGCTCGAGCTCAACGATGT
ACTTTTCGGGAAACATGATGAGTATTTGAGCAAGTTTGTGAACAACACCC
AAATGGATTCCAATGTTCAAGTGGAATGCTTCCCCCGCGTATTCTGGTCA
AATGAGTACAAACAGCTCACAGATGTGCTGAGGAGCACTGTTAAGGATTC
AGTGTCGTGTTTCCGAGTGCTTATTCTGTCCTTCGATAACTGGATCACCA
GCGATGCCGCGGAGTATCACGGTTTCTCGTCTAAGATACGAACTTTTGTT
TCAGGGAGAGCTACTCGATGTGTGGAAGTAAAACTGAAAGACTACTCTCA
TTGGGATCACATCAACCTTGAACAGATTCTTTTCTGGGGCCTGTCAATGA
GCGTGGTTGTTTTCCGATTTTGCACTCCAGAACATCTGGCTCTCATGCTA
GAGGCAAGTACACAGATTACCCTAAAATATCCTGGCCTAATAGAGGACGT
GCAGCGTGTGTTGTATGTGGAGACTTCGTCGACAGACAATGTGGGTGATG
TACGACAAAATATTAAGGACGTTGCTGTGAGGAAACGTATGTTAGAGCCT
AGAGATGAGGAAGACATCCTGTTCGAGAAAAGTTATGGTTCGGTTGAGGA
AATGATGGAATATATCAGAGGAAGAGGAAAAGGCATAAGAAGCATCATCA
ATAACGATGTGAAAGGTGAATCGCGTGATCTGATGATTTCGATTGCACGT
ATACTCAATCACGAGTTAACTGAAGACGAAGCAATGGACGACACCCAAGC
AGTGGTGAAGTTCGCGTCGAAAATCAGAGAAAACGCTATGTCGTCGAAGA
TTGATTTGTACAGGGACAAAAAGGAAATGGTGTTGTCCAATGGTGATTAC
AACACAGGGTTCTTACCGCACATTGCGCACCATGTACGTGATAGCGAGTA
CGAGGACTTTCGCAGCGTACCCAAGCACAGTACAATGCATCTCAGATTAA
CTATTCGAATGTATGGAGTGGATCGCGTGTGGCAACATTGTTGGTGCAGA
AAATGGAAGGCTTTCAAGGATGCTCTTGAACTGGTTCAAGCCGAACAACT
TTTCTTGACGACTGTTTTCGAAGAGAAGAATACGATGAGGAAATGTAACG
TGGGGTCTGCAGGGCCAATTGTTTCGCGAGTATCGGTATTTGCAATGGGT
GGTGGTGATAGGGACGATTACCTTCATGCGAGACTGCAGCAATGTGTGAT
GAGACTCAGCGAACTGGAGAGGAAGGAGGCAGGATGGGCAGCTTTGCGGG
TTCTTCTCAAACTTATTCCAGAGCTGGTGGAATTTTGCAGAAAGCCAAAA
GACACATGA

Coding sequence (CDS) from alignment at NODE_277_length_32544_cov_4.366438:197..2155-

>Gcaud3695.t1 ID=Gcaud3695.t1|Name=Gcaud3695.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1959bp|location=Sequence derived from alignment at NODE_277_length_32544_cov_4.366438:197..2155- (Gracilaria caudata M_176_S67 male)
ATGGCTGAGGTTTGCGTCTTCTTGTTGGAGGCGCTTGTCGGTGTGGTTCT
CGATCGAGTTTTCAACCAATATGATACTACAGCTCTCATCGATGAAGTCG
AAAAACTACAGAGCACTGTCGTAGATTTACAACACCAAGTTTTGGCTCTG
GAAAAGGTCATCACACAATTCACGGACAAAGTACCAGACGAGGTAGTTCG
TTTTCGTAGAGTTCGAGAAAAGACTCACTTTCATTTGAGGGATTTTGATC
CCACGCTAATCGACTTTGCTACGGAACTCGTGGCATCATTGCTCAACGGT
CTCGCTTTAGGATTTCAGCTCAAAGTTCACGCAACAAAGAAGGCCCTTAA
TCGAGGAAGGGCTTTCGAGGCACGCGACTTTGAAGTGGTGTTGGGAGCAA
GCAAAACCGTGCTTGACAACGTCTTGGTCCTGAAACGATTGTTCAACGCA
ATAACAGAGTATGTGGACTTCCAAGCAGTTTCCCGACTTGAAAAGCCAAC
GATTACGTTGAACATGGTATGTGGAAGTACTATTGAGTTCAAAGCTCTCG
AGCTCATGAGGTATCGAATTTCATTACGATTGCATAGAATCAGTACAATG
GCGTTAAATTGGAGCACCTCATGTTTGGGTACGCTCGAGCTCAACGATGT
ACTTTTCGGGAAACATGATGAGTATTTGAGCAAGTTTGTGAACAACACCC
AAATGGATTCCAATGTTCAAGTGGAATGCTTCCCCCGCGTATTCTGGTCA
AATGAGTACAAACAGCTCACAGATGTGCTGAGGAGCACTGTTAAGGATTC
AGTGTCGTGTTTCCGAGTGCTTATTCTGTCCTTCGATAACTGGATCACCA
GCGATGCCGCGGAGTATCACGGTTTCTCGTCTAAGATACGAACTTTTGTT
TCAGGGAGAGCTACTCGATGTGTGGAAGTAAAACTGAAAGACTACTCTCA
TTGGGATCACATCAACCTTGAACAGATTCTTTTCTGGGGCCTGTCAATGA
GCGTGGTTGTTTTCCGATTTTGCACTCCAGAACATCTGGCTCTCATGCTA
GAGGCAAGTACACAGATTACCCTAAAATATCCTGGCCTAATAGAGGACGT
GCAGCGTGTGTTGTATGTGGAGACTTCGTCGACAGACAATGTGGGTGATG
TACGACAAAATATTAAGGACGTTGCTGTGAGGAAACGTATGTTAGAGCCT
AGAGATGAGGAAGACATCCTGTTCGAGAAAAGTTATGGTTCGGTTGAGGA
AATGATGGAATATATCAGAGGAAGAGGAAAAGGCATAAGAAGCATCATCA
ATAACGATGTGAAAGGTGAATCGCGTGATCTGATGATTTCGATTGCACGT
ATACTCAATCACGAGTTAACTGAAGACGAAGCAATGGACGACACCCAAGC
AGTGGTGAAGTTCGCGTCGAAAATCAGAGAAAACGCTATGTCGTCGAAGA
TTGATTTGTACAGGGACAAAAAGGAAATGGTGTTGTCCAATGGTGATTAC
AACACAGGGTTCTTACCGCACATTGCGCACCATGTACGTGATAGCGAGTA
CGAGGACTTTCGCAGCGTACCCAAGCACAGTACAATGCATCTCAGATTAA
CTATTCGAATGTATGGAGTGGATCGCGTGTGGCAACATTGTTGGTGCAGA
AAATGGAAGGCTTTCAAGGATGCTCTTGAACTGGTTCAAGCCGAACAACT
TTTCTTGACGACTGTTTTCGAAGAGAAGAATACGATGAGGAAATGTAACG
TGGGGTCTGCAGGGCCAATTGTTTCGCGAGTATCGGTATTTGCAATGGGT
GGTGGTGATAGGGACGATTACCTTCATGCGAGACTGCAGCAATGTGTGAT
GAGACTCAGCGAACTGGAGAGGAAGGAGGCAGGATGGGCAGCTTTGCGGG
TTCTTCTCAAACTTATTCCAGAGCTGGTGGAATTTTGCAGAAAGCCAAAA
GACACATGA