Gcaud3688.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3688.t1
Unique NameGcaud3688.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_617_length_20824_cov_5.063425contigNODE_617_length_20824_cov_5.063425:15843..16232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog321327.CYA_2834
Preferred namehliC
PFAMsChloroa_b-bind
Max annot lvl1117|Cyanobacteria
Evalue1.84e-09
EggNOG OGs2EACI@1|root,334GG@2|Bacteria,1G907@1117|Cyanobacteria,1H1H0@1129|Synechococcus
DescriptionChlorophyll A-B binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3688Gcaud3688Gracilaria caudata M_176_S67 malegeneNODE_617_length_20824_cov_5.063425 15843..16232 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3688.t1.stop1Gcaud3688.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_617_length_20824_cov_5.063425 15843..15845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3688.t1.CDS1Gcaud3688.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_617_length_20824_cov_5.063425 15843..16232 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3688.t1.exon1Gcaud3688.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_617_length_20824_cov_5.063425 15843..16232 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3688.t1.start1Gcaud3688.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_617_length_20824_cov_5.063425 16230..16232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3688.t1Gcaud3688.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_617_length_20824_cov_5.063425 15843..16232 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3688.t1 ID=Gcaud3688.t1|Name=Gcaud3688.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=130bp
MNPHSAFVSSFTPSLNTTTNSFISPATAHAPKTFTAAPRMALQTKDKPKV
VQSPYRSLEANRAAKLDSEYRGPQGFTPYAEKVNGRLAQLGFVIGLLTEI
ITGKGINEQILIMFSPLTHLVESLARIAH*
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spliced messenger RNA

>Gcaud3688.t1 ID=Gcaud3688.t1|Name=Gcaud3688.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp|location=Sequence derived from alignment at NODE_617_length_20824_cov_5.063425:15843..16232- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCCGCATTCCGCCTTCGTGTCCTCCTTCACCCCATCCCTCAACAC
AACCACCAACTCCTTCATCTCGCCCGCCACCGCCCATGCACCGAAGACAT
TCACCGCGGCTCCCCGCATGGCACTGCAGACGAAGGACAAGCCAAAGGTC
GTGCAATCACCCTACCGCTCACTGGAAGCCAACCGCGCCGCCAAGCTGGA
CAGCGAATATAGAGGACCACAAGGTTTCACACCGTACGCCGAAAAGGTCA
ATGGTCGACTGGCACAGCTTGGATTCGTTATCGGGCTTTTGACGGAGATC
ATCACTGGCAAGGGTATCAACGAGCAGATTCTGATCATGTTTTCACCGCT
CACCCACCTTGTTGAAAGTTTGGCAAGGATCGCTCACTAA
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protein sequence of Gcaud3688.t1

>Gcaud3688.t1 ID=Gcaud3688.t1|Name=Gcaud3688.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=130bp
MNPHSAFVSSFTPSLNTTTNSFISPATAHAPKTFTAAPRMALQTKDKPKV
VQSPYRSLEANRAAKLDSEYRGPQGFTPYAEKVNGRLAQLGFVIGLLTEI
ITGKGINEQILIMFSPLTHLVESLARIAH*
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mRNA from alignment at NODE_617_length_20824_cov_5.063425:15843..16232-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3688.t1 ID=Gcaud3688.t1|Name=Gcaud3688.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=390bp|location=Sequence derived from alignment at NODE_617_length_20824_cov_5.063425:15843..16232- (Gracilaria caudata M_176_S67 male)
ATGAACCCGCATTCCGCCTTCGTGTCCTCCTTCACCCCATCCCTCAACAC
AACCACCAACTCCTTCATCTCGCCCGCCACCGCCCATGCACCGAAGACAT
TCACCGCGGCTCCCCGCATGGCACTGCAGACGAAGGACAAGCCAAAGGTC
GTGCAATCACCCTACCGCTCACTGGAAGCCAACCGCGCCGCCAAGCTGGA
CAGCGAATATAGAGGACCACAAGGTTTCACACCGTACGCCGAAAAGGTCA
ATGGTCGACTGGCACAGCTTGGATTCGTTATCGGGCTTTTGACGGAGATC
ATCACTGGCAAGGGTATCAACGAGCAGATTCTGATCATGTTTTCACCGCT
CACCCACCTTGTTGAAAGTTTGGCAAGGATCGCTCACTAA
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Coding sequence (CDS) from alignment at NODE_617_length_20824_cov_5.063425:15843..16232-

>Gcaud3688.t1 ID=Gcaud3688.t1|Name=Gcaud3688.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=390bp|location=Sequence derived from alignment at NODE_617_length_20824_cov_5.063425:15843..16232- (Gracilaria caudata M_176_S67 male)
ATGAACCCGCATTCCGCCTTCGTGTCCTCCTTCACCCCATCCCTCAACAC
AACCACCAACTCCTTCATCTCGCCCGCCACCGCCCATGCACCGAAGACAT
TCACCGCGGCTCCCCGCATGGCACTGCAGACGAAGGACAAGCCAAAGGTC
GTGCAATCACCCTACCGCTCACTGGAAGCCAACCGCGCCGCCAAGCTGGA
CAGCGAATATAGAGGACCACAAGGTTTCACACCGTACGCCGAAAAGGTCA
ATGGTCGACTGGCACAGCTTGGATTCGTTATCGGGCTTTTGACGGAGATC
ATCACTGGCAAGGGTATCAACGAGCAGATTCTGATCATGTTTTCACCGCT
CACCCACCTTGTTGAAAGTTTGGCAAGGATCGCTCACTAA
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