Gcaud3686.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3686.t1
Unique Name	Gcaud3686.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_617_length_20824_cov_5.063425	contig	NODE_617_length_20824_cov_5.063425:7119..9002 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3686	Gcaud3686	Gracilaria caudata M_176_S67 male	gene	NODE_617_length_20824_cov_5.063425 7119..9002 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3686.t1.stop1	Gcaud3686.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_617_length_20824_cov_5.063425 7119..7121 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3686.t1.CDS1	Gcaud3686.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_617_length_20824_cov_5.063425 7119..9002 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3686.t1.exon1	Gcaud3686.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_617_length_20824_cov_5.063425 7119..9002 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3686.t1.start1	Gcaud3686.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_617_length_20824_cov_5.063425 9000..9002 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3686.t1	Gcaud3686.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_617_length_20824_cov_5.063425 7119..9002 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_617_length_20824_cov_5.063425:7119..9002-
coding sequence from alignment at NODE_617_length_20824_cov_5.063425:7119..9002-

mRNA sequence

>Gcaud3686.t1 ID=Gcaud3686.t1|Name=Gcaud3686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=628bp
MKRFQKYVHKKVSDFDSVLQQHLSDASASTPIPSPLFHPGSSSNPRPHAL
HSDRDPVVDRVFSTNSPSVSDPHQFLSNIPEHILSDPVALRDFIHESTDK
RKNEDHFQLHPDADRVNHSHFTSTCDQLREQHLRFPAPQWHVSSSMLDRA
WRVSSSNVDRALACSAVNALLEQLTYALAGIENGITFTALHLPRFEPLSD
SVLSLVQSGLSRPFSTDTHHDLYQLRDQVIARDKRALAQSIYDVTHSSVP
IFAVLYSPKTQPSPWRLDDKQMKSLLMILNTLTGGKGARIWMVDLAMMGY
SKQAVWQRVGLLPFALYPAVVLDHELRGLQAVFERMAKMCLGVVQVVNPA
DWTLRWLHATEEDNHFKNLKLRSGVNKSVTKLVGNRWGVKRAIEELVVDI
VTGEIGDEELRNDEWNRSNLMSFVNQVATGKGLDTIMLGLGDIEQQNQEA
VQENAIFHLLARYQKASLRIDGQEEKRRVSKARDPIRARGIDNKWEGIQE
FVGNPEYGRHINIQDMKRQYDCLYYAGRPWMIARAKLEGNGVELYGAVLV
RMIDDDPKRGTVSKVWPVADQWMRMSGDEMEYYSFTTALTESGIDDVSKE
VMTIVKSLRGKHIRTVIAFEEIDWRTY*

spliced messenger RNA

>Gcaud3686.t1 ID=Gcaud3686.t1|Name=Gcaud3686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_617_length_20824_cov_5.063425:7119..9002- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGATTTCAAAAGTACGTCCATAAGAAAGTTTCCGACTTCGATTC
AGTTCTCCAACAGCATCTCTCCGATGCCTCCGCATCCACCCCCATCCCTT
CCCCTTTGTTCCATCCTGGCTCATCCTCCAATCCTCGCCCTCATGCTCTT
CACTCAGATCGAGATCCAGTGGTGGACCGAGTGTTTTCCACTAACTCTCC
AAGCGTCTCAGACCCGCATCAATTTCTTTCCAATATTCCTGAGCACATCC
TTTCTGATCCAGTGGCTCTGAGAGATTTTATTCACGAAAGCACCGATAAA
AGAAAAAATGAAGACCATTTCCAGCTCCATCCCGACGCCGACAGAGTCAA
TCACTCTCATTTCACTTCCACTTGCGATCAGCTCCGCGAACAACATCTCC
GTTTTCCCGCTCCACAGTGGCACGTGTCCTCCTCCATGTTGGACAGGGCA
TGGCGCGTGTCCTCCTCCAATGTGGACAGGGCACTTGCCTGCTCTGCTGT
GAACGCTCTGCTCGAGCAACTCACCTACGCACTCGCAGGTATCGAGAACG
GCATCACGTTCACCGCATTGCACTTACCCAGATTTGAGCCACTGTCGGAT
TCTGTACTGTCGCTCGTGCAAAGCGGTTTGTCGAGACCATTCTCCACGGA
CACGCATCACGATTTGTATCAACTCCGCGATCAGGTTATCGCTCGAGATA
AACGTGCGTTGGCCCAAAGCATTTATGATGTGACACATTCCAGCGTACCG
ATTTTCGCTGTGCTTTATTCACCCAAGACACAGCCCTCACCGTGGAGATT
GGATGACAAACAAATGAAGTCCCTGCTAATGATTCTGAACACACTGACAG
GCGGAAAGGGAGCGAGGATCTGGATGGTGGATCTGGCAATGATGGGATAT
TCCAAGCAAGCGGTGTGGCAGCGCGTCGGATTGCTTCCGTTTGCATTGTA
TCCAGCTGTTGTGTTGGATCATGAGCTTCGCGGACTGCAAGCCGTGTTTG
AGCGGATGGCGAAGATGTGTTTGGGCGTAGTTCAGGTGGTCAATCCGGCT
GATTGGACACTTAGATGGCTCCATGCAACTGAAGAAGATAATCATTTCAA
GAATTTGAAGTTGAGATCTGGAGTGAACAAGAGCGTGACGAAGTTGGTGG
GAAACAGGTGGGGAGTTAAGAGAGCAATTGAGGAGCTGGTAGTGGACATC
GTGACTGGAGAGATTGGTGACGAAGAGTTGCGCAACGATGAATGGAATAG
AAGTAATTTGATGTCGTTCGTAAACCAGGTGGCGACAGGTAAAGGTTTGG
ATACAATTATGCTAGGGCTGGGAGATATTGAACAACAAAATCAAGAAGCA
GTTCAGGAGAATGCTATCTTCCATTTGTTGGCGCGGTATCAGAAGGCATC
ACTGAGAATTGATGGACAAGAAGAGAAGAGGAGGGTATCAAAAGCACGGG
ATCCCATCCGTGCGAGGGGGATTGACAACAAGTGGGAAGGAATCCAAGAA
TTCGTCGGGAACCCTGAGTATGGGAGACATATTAATATTCAGGATATGAA
GAGACAATACGATTGTCTTTATTATGCGGGTAGGCCCTGGATGATAGCAA
GAGCAAAACTCGAGGGAAATGGTGTTGAACTGTATGGCGCCGTGCTGGTT
CGAATGATTGATGATGATCCGAAACGTGGAACTGTTTCAAAAGTGTGGCC
AGTTGCAGACCAATGGATGCGCATGTCAGGAGACGAAATGGAATATTACT
CTTTCACAACGGCTTTAACCGAAAGCGGCATTGATGACGTATCAAAAGAA
GTGATGACAATCGTGAAGTCTCTCAGAGGAAAGCATATTCGAACAGTAAT
CGCCTTTGAAGAGATAGACTGGCGCACATATTGA

protein sequence of Gcaud3686.t1

>Gcaud3686.t1 ID=Gcaud3686.t1|Name=Gcaud3686.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=628bp
MKRFQKYVHKKVSDFDSVLQQHLSDASASTPIPSPLFHPGSSSNPRPHAL
HSDRDPVVDRVFSTNSPSVSDPHQFLSNIPEHILSDPVALRDFIHESTDK
RKNEDHFQLHPDADRVNHSHFTSTCDQLREQHLRFPAPQWHVSSSMLDRA
WRVSSSNVDRALACSAVNALLEQLTYALAGIENGITFTALHLPRFEPLSD
SVLSLVQSGLSRPFSTDTHHDLYQLRDQVIARDKRALAQSIYDVTHSSVP
IFAVLYSPKTQPSPWRLDDKQMKSLLMILNTLTGGKGARIWMVDLAMMGY
SKQAVWQRVGLLPFALYPAVVLDHELRGLQAVFERMAKMCLGVVQVVNPA
DWTLRWLHATEEDNHFKNLKLRSGVNKSVTKLVGNRWGVKRAIEELVVDI
VTGEIGDEELRNDEWNRSNLMSFVNQVATGKGLDTIMLGLGDIEQQNQEA
VQENAIFHLLARYQKASLRIDGQEEKRRVSKARDPIRARGIDNKWEGIQE
FVGNPEYGRHINIQDMKRQYDCLYYAGRPWMIARAKLEGNGVELYGAVLV
RMIDDDPKRGTVSKVWPVADQWMRMSGDEMEYYSFTTALTESGIDDVSKE
VMTIVKSLRGKHIRTVIAFEEIDWRTY*

mRNA from alignment at NODE_617_length_20824_cov_5.063425:7119..9002-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3686.t1 ID=Gcaud3686.t1|Name=Gcaud3686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at NODE_617_length_20824_cov_5.063425:7119..9002- (Gracilaria caudata M_176_S67 male)
ATGAAGCGATTTCAAAAGTACGTCCATAAGAAAGTTTCCGACTTCGATTC
AGTTCTCCAACAGCATCTCTCCGATGCCTCCGCATCCACCCCCATCCCTT
CCCCTTTGTTCCATCCTGGCTCATCCTCCAATCCTCGCCCTCATGCTCTT
CACTCAGATCGAGATCCAGTGGTGGACCGAGTGTTTTCCACTAACTCTCC
AAGCGTCTCAGACCCGCATCAATTTCTTTCCAATATTCCTGAGCACATCC
TTTCTGATCCAGTGGCTCTGAGAGATTTTATTCACGAAAGCACCGATAAA
AGAAAAAATGAAGACCATTTCCAGCTCCATCCCGACGCCGACAGAGTCAA
TCACTCTCATTTCACTTCCACTTGCGATCAGCTCCGCGAACAACATCTCC
GTTTTCCCGCTCCACAGTGGCACGTGTCCTCCTCCATGTTGGACAGGGCA
TGGCGCGTGTCCTCCTCCAATGTGGACAGGGCACTTGCCTGCTCTGCTGT
GAACGCTCTGCTCGAGCAACTCACCTACGCACTCGCAGGTATCGAGAACG
GCATCACGTTCACCGCATTGCACTTACCCAGATTTGAGCCACTGTCGGAT
TCTGTACTGTCGCTCGTGCAAAGCGGTTTGTCGAGACCATTCTCCACGGA
CACGCATCACGATTTGTATCAACTCCGCGATCAGGTTATCGCTCGAGATA
AACGTGCGTTGGCCCAAAGCATTTATGATGTGACACATTCCAGCGTACCG
ATTTTCGCTGTGCTTTATTCACCCAAGACACAGCCCTCACCGTGGAGATT
GGATGACAAACAAATGAAGTCCCTGCTAATGATTCTGAACACACTGACAG
GCGGAAAGGGAGCGAGGATCTGGATGGTGGATCTGGCAATGATGGGATAT
TCCAAGCAAGCGGTGTGGCAGCGCGTCGGATTGCTTCCGTTTGCATTGTA
TCCAGCTGTTGTGTTGGATCATGAGCTTCGCGGACTGCAAGCCGTGTTTG
AGCGGATGGCGAAGATGTGTTTGGGCGTAGTTCAGGTGGTCAATCCGGCT
GATTGGACACTTAGATGGCTCCATGCAACTGAAGAAGATAATCATTTCAA
GAATTTGAAGTTGAGATCTGGAGTGAACAAGAGCGTGACGAAGTTGGTGG
GAAACAGGTGGGGAGTTAAGAGAGCAATTGAGGAGCTGGTAGTGGACATC
GTGACTGGAGAGATTGGTGACGAAGAGTTGCGCAACGATGAATGGAATAG
AAGTAATTTGATGTCGTTCGTAAACCAGGTGGCGACAGGTAAAGGTTTGG
ATACAATTATGCTAGGGCTGGGAGATATTGAACAACAAAATCAAGAAGCA
GTTCAGGAGAATGCTATCTTCCATTTGTTGGCGCGGTATCAGAAGGCATC
ACTGAGAATTGATGGACAAGAAGAGAAGAGGAGGGTATCAAAAGCACGGG
ATCCCATCCGTGCGAGGGGGATTGACAACAAGTGGGAAGGAATCCAAGAA
TTCGTCGGGAACCCTGAGTATGGGAGACATATTAATATTCAGGATATGAA
GAGACAATACGATTGTCTTTATTATGCGGGTAGGCCCTGGATGATAGCAA
GAGCAAAACTCGAGGGAAATGGTGTTGAACTGTATGGCGCCGTGCTGGTT
CGAATGATTGATGATGATCCGAAACGTGGAACTGTTTCAAAAGTGTGGCC
AGTTGCAGACCAATGGATGCGCATGTCAGGAGACGAAATGGAATATTACT
CTTTCACAACGGCTTTAACCGAAAGCGGCATTGATGACGTATCAAAAGAA
GTGATGACAATCGTGAAGTCTCTCAGAGGAAAGCATATTCGAACAGTAAT
CGCCTTTGAAGAGATAGACTGGCGCACATATTGA

Coding sequence (CDS) from alignment at NODE_617_length_20824_cov_5.063425:7119..9002-

>Gcaud3686.t1 ID=Gcaud3686.t1|Name=Gcaud3686.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1884bp|location=Sequence derived from alignment at NODE_617_length_20824_cov_5.063425:7119..9002- (Gracilaria caudata M_176_S67 male)
ATGAAGCGATTTCAAAAGTACGTCCATAAGAAAGTTTCCGACTTCGATTC
AGTTCTCCAACAGCATCTCTCCGATGCCTCCGCATCCACCCCCATCCCTT
CCCCTTTGTTCCATCCTGGCTCATCCTCCAATCCTCGCCCTCATGCTCTT
CACTCAGATCGAGATCCAGTGGTGGACCGAGTGTTTTCCACTAACTCTCC
AAGCGTCTCAGACCCGCATCAATTTCTTTCCAATATTCCTGAGCACATCC
TTTCTGATCCAGTGGCTCTGAGAGATTTTATTCACGAAAGCACCGATAAA
AGAAAAAATGAAGACCATTTCCAGCTCCATCCCGACGCCGACAGAGTCAA
TCACTCTCATTTCACTTCCACTTGCGATCAGCTCCGCGAACAACATCTCC
GTTTTCCCGCTCCACAGTGGCACGTGTCCTCCTCCATGTTGGACAGGGCA
TGGCGCGTGTCCTCCTCCAATGTGGACAGGGCACTTGCCTGCTCTGCTGT
GAACGCTCTGCTCGAGCAACTCACCTACGCACTCGCAGGTATCGAGAACG
GCATCACGTTCACCGCATTGCACTTACCCAGATTTGAGCCACTGTCGGAT
TCTGTACTGTCGCTCGTGCAAAGCGGTTTGTCGAGACCATTCTCCACGGA
CACGCATCACGATTTGTATCAACTCCGCGATCAGGTTATCGCTCGAGATA
AACGTGCGTTGGCCCAAAGCATTTATGATGTGACACATTCCAGCGTACCG
ATTTTCGCTGTGCTTTATTCACCCAAGACACAGCCCTCACCGTGGAGATT
GGATGACAAACAAATGAAGTCCCTGCTAATGATTCTGAACACACTGACAG
GCGGAAAGGGAGCGAGGATCTGGATGGTGGATCTGGCAATGATGGGATAT
TCCAAGCAAGCGGTGTGGCAGCGCGTCGGATTGCTTCCGTTTGCATTGTA
TCCAGCTGTTGTGTTGGATCATGAGCTTCGCGGACTGCAAGCCGTGTTTG
AGCGGATGGCGAAGATGTGTTTGGGCGTAGTTCAGGTGGTCAATCCGGCT
GATTGGACACTTAGATGGCTCCATGCAACTGAAGAAGATAATCATTTCAA
GAATTTGAAGTTGAGATCTGGAGTGAACAAGAGCGTGACGAAGTTGGTGG
GAAACAGGTGGGGAGTTAAGAGAGCAATTGAGGAGCTGGTAGTGGACATC
GTGACTGGAGAGATTGGTGACGAAGAGTTGCGCAACGATGAATGGAATAG
AAGTAATTTGATGTCGTTCGTAAACCAGGTGGCGACAGGTAAAGGTTTGG
ATACAATTATGCTAGGGCTGGGAGATATTGAACAACAAAATCAAGAAGCA
GTTCAGGAGAATGCTATCTTCCATTTGTTGGCGCGGTATCAGAAGGCATC
ACTGAGAATTGATGGACAAGAAGAGAAGAGGAGGGTATCAAAAGCACGGG
ATCCCATCCGTGCGAGGGGGATTGACAACAAGTGGGAAGGAATCCAAGAA
TTCGTCGGGAACCCTGAGTATGGGAGACATATTAATATTCAGGATATGAA
GAGACAATACGATTGTCTTTATTATGCGGGTAGGCCCTGGATGATAGCAA
GAGCAAAACTCGAGGGAAATGGTGTTGAACTGTATGGCGCCGTGCTGGTT
CGAATGATTGATGATGATCCGAAACGTGGAACTGTTTCAAAAGTGTGGCC
AGTTGCAGACCAATGGATGCGCATGTCAGGAGACGAAATGGAATATTACT
CTTTCACAACGGCTTTAACCGAAAGCGGCATTGATGACGTATCAAAAGAA
GTGATGACAATCGTGAAGTCTCTCAGAGGAAAGCATATTCGAACAGTAAT
CGCCTTTGAAGAGATAGACTGGCGCACATATTGA