Gcaud3685.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3685.t1
Unique Name	Gcaud3685.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	335

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:30987..31991 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3694.POPTR_0003s08370.1
PFAMs	XendoU
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14648
Evalue	2.43e-59
EggNOG OGs	KOG2849@1\|root,KOG2849@2759\|Eukaryota,37NFI@33090\|Viridiplantae,3GAEP@35493\|Streptophyta,4JM56@91835\|fabids
Description	poly(U)-specific endoribonuclease-B-like
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3685	Gcaud3685	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 30987..31991 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3685.t1.start1	Gcaud3685.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 30987..30989 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3685.t1.CDS1	Gcaud3685.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 30987..31991 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3685.t1.exon1	Gcaud3685.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 30987..31991 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3685.t1.stop1	Gcaud3685.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 31989..31991 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3685.t1	Gcaud3685.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 30987..31991 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+

mRNA sequence

>Gcaud3685.t1 ID=Gcaud3685.t1|Name=Gcaud3685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=335bp
MPLTIEDALVRSTDCWTEAVSMIWEFDRNRLVPDKHYKISPQSRTDHRSE
DAARVPLFEFFSDEVWEIESFRLFKKLLDNYVVTQGLPERVSAEEKMEEE
SFLECICESDCIKFLFGWLKSRRFDVGSSMDEFKNVLRDIWFGMHDRGRS
RDSSAFEHVFCGEIDGDDVKGLHNYIQVYIEEQRGNFDYMGYVDFQGDFM
DSAPLSNQQILMIRFQWFGCLKSVSSMLIGSSPEFEIALYTLAFFNRGEI
RERHPNLINLGPYLIHIRCYCVNGHITSAFLCLEGVDKEMLEEDRRERKE
LNGHEYEGDEPEADQLEQVNAAVLQDSEEFPPLG*

spliced messenger RNA

>Gcaud3685.t1 ID=Gcaud3685.t1|Name=Gcaud3685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTCACCATTGAAGACGCGTTGGTAAGATCCACAGACTGTTGGAC
TGAGGCCGTCTCGATGATATGGGAATTTGACCGTAATCGACTCGTTCCAG
ACAAGCATTATAAGATTAGCCCGCAAAGTCGTACCGATCATCGTTCCGAG
GATGCCGCGCGTGTTCCGCTGTTCGAGTTTTTCTCAGACGAAGTTTGGGA
GATTGAATCCTTCAGACTCTTCAAGAAGTTGCTGGACAATTACGTCGTGA
CACAGGGCCTGCCGGAACGTGTTTCAGCAGAGGAAAAGATGGAAGAAGAG
AGCTTCCTGGAATGCATTTGTGAGAGTGATTGTATAAAGTTCTTGTTCGG
GTGGCTGAAAAGCCGCAGATTCGATGTTGGTTCTTCTATGGATGAGTTCA
AAAATGTCTTACGTGACATATGGTTTGGAATGCATGACAGGGGCCGTAGC
AGGGACTCTTCCGCATTTGAACATGTGTTCTGTGGCGAGATCGATGGAGA
TGATGTGAAAGGTCTTCACAACTATATTCAGGTTTACATTGAGGAACAGC
GTGGAAACTTCGACTACATGGGATATGTTGACTTTCAGGGAGACTTCATG
GATAGCGCACCACTGTCGAACCAGCAGATTTTGATGATTCGTTTCCAGTG
GTTTGGTTGTCTAAAGAGTGTGTCGTCTATGTTAATTGGTAGTTCTCCGG
AATTTGAGATTGCCCTTTACACTTTGGCTTTCTTCAACAGGGGTGAAATC
CGCGAGCGCCACCCCAATCTCATAAATCTTGGACCCTATTTAATCCATAT
TCGTTGCTATTGCGTTAATGGTCATATCACCAGTGCGTTTCTTTGTCTGG
AGGGCGTCGATAAAGAGATGCTGGAGGAGGACCGTCGTGAACGCAAGGAA
TTGAATGGCCATGAATATGAAGGGGATGAACCGGAGGCTGATCAGCTCGA
GCAAGTTAACGCTGCTGTTTTGCAGGATTCAGAAGAGTTCCCGCCGTTGG
GTTAA

protein sequence of Gcaud3685.t1

>Gcaud3685.t1 ID=Gcaud3685.t1|Name=Gcaud3685.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=335bp
MPLTIEDALVRSTDCWTEAVSMIWEFDRNRLVPDKHYKISPQSRTDHRSE
DAARVPLFEFFSDEVWEIESFRLFKKLLDNYVVTQGLPERVSAEEKMEEE
SFLECICESDCIKFLFGWLKSRRFDVGSSMDEFKNVLRDIWFGMHDRGRS
RDSSAFEHVFCGEIDGDDVKGLHNYIQVYIEEQRGNFDYMGYVDFQGDFM
DSAPLSNQQILMIRFQWFGCLKSVSSMLIGSSPEFEIALYTLAFFNRGEI
RERHPNLINLGPYLIHIRCYCVNGHITSAFLCLEGVDKEMLEEDRRERKE
LNGHEYEGDEPEADQLEQVNAAVLQDSEEFPPLG*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3685.t1 ID=Gcaud3685.t1|Name=Gcaud3685.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+ (Gracilaria caudata M_176_S67 male)
ATGCCGCTCACCATTGAAGACGCGTTGGTAAGATCCACAGACTGTTGGAC
TGAGGCCGTCTCGATGATATGGGAATTTGACCGTAATCGACTCGTTCCAG
ACAAGCATTATAAGATTAGCCCGCAAAGTCGTACCGATCATCGTTCCGAG
GATGCCGCGCGTGTTCCGCTGTTCGAGTTTTTCTCAGACGAAGTTTGGGA
GATTGAATCCTTCAGACTCTTCAAGAAGTTGCTGGACAATTACGTCGTGA
CACAGGGCCTGCCGGAACGTGTTTCAGCAGAGGAAAAGATGGAAGAAGAG
AGCTTCCTGGAATGCATTTGTGAGAGTGATTGTATAAAGTTCTTGTTCGG
GTGGCTGAAAAGCCGCAGATTCGATGTTGGTTCTTCTATGGATGAGTTCA
AAAATGTCTTACGTGACATATGGTTTGGAATGCATGACAGGGGCCGTAGC
AGGGACTCTTCCGCATTTGAACATGTGTTCTGTGGCGAGATCGATGGAGA
TGATGTGAAAGGTCTTCACAACTATATTCAGGTTTACATTGAGGAACAGC
GTGGAAACTTCGACTACATGGGATATGTTGACTTTCAGGGAGACTTCATG
GATAGCGCACCACTGTCGAACCAGCAGATTTTGATGATTCGTTTCCAGTG
GTTTGGTTGTCTAAAGAGTGTGTCGTCTATGTTAATTGGTAGTTCTCCGG
AATTTGAGATTGCCCTTTACACTTTGGCTTTCTTCAACAGGGGTGAAATC
CGCGAGCGCCACCCCAATCTCATAAATCTTGGACCCTATTTAATCCATAT
TCGTTGCTATTGCGTTAATGGTCATATCACCAGTGCGTTTCTTTGTCTGG
AGGGCGTCGATAAAGAGATGCTGGAGGAGGACCGTCGTGAACGCAAGGAA
TTGAATGGCCATGAATATGAAGGGGATGAACCGGAGGCTGATCAGCTCGA
GCAAGTTAACGCTGCTGTTTTGCAGGATTCAGAAGAGTTCCCGCCGTTGG
GTTAA

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+

>Gcaud3685.t1 ID=Gcaud3685.t1|Name=Gcaud3685.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1005bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:30987..31991+ (Gracilaria caudata M_176_S67 male)
ATGCCGCTCACCATTGAAGACGCGTTGGTAAGATCCACAGACTGTTGGAC
TGAGGCCGTCTCGATGATATGGGAATTTGACCGTAATCGACTCGTTCCAG
ACAAGCATTATAAGATTAGCCCGCAAAGTCGTACCGATCATCGTTCCGAG
GATGCCGCGCGTGTTCCGCTGTTCGAGTTTTTCTCAGACGAAGTTTGGGA
GATTGAATCCTTCAGACTCTTCAAGAAGTTGCTGGACAATTACGTCGTGA
CACAGGGCCTGCCGGAACGTGTTTCAGCAGAGGAAAAGATGGAAGAAGAG
AGCTTCCTGGAATGCATTTGTGAGAGTGATTGTATAAAGTTCTTGTTCGG
GTGGCTGAAAAGCCGCAGATTCGATGTTGGTTCTTCTATGGATGAGTTCA
AAAATGTCTTACGTGACATATGGTTTGGAATGCATGACAGGGGCCGTAGC
AGGGACTCTTCCGCATTTGAACATGTGTTCTGTGGCGAGATCGATGGAGA
TGATGTGAAAGGTCTTCACAACTATATTCAGGTTTACATTGAGGAACAGC
GTGGAAACTTCGACTACATGGGATATGTTGACTTTCAGGGAGACTTCATG
GATAGCGCACCACTGTCGAACCAGCAGATTTTGATGATTCGTTTCCAGTG
GTTTGGTTGTCTAAAGAGTGTGTCGTCTATGTTAATTGGTAGTTCTCCGG
AATTTGAGATTGCCCTTTACACTTTGGCTTTCTTCAACAGGGGTGAAATC
CGCGAGCGCCACCCCAATCTCATAAATCTTGGACCCTATTTAATCCATAT
TCGTTGCTATTGCGTTAATGGTCATATCACCAGTGCGTTTCTTTGTCTGG
AGGGCGTCGATAAAGAGATGCTGGAGGAGGACCGTCGTGAACGCAAGGAA
TTGAATGGCCATGAATATGAAGGGGATGAACCGGAGGCTGATCAGCTCGA
GCAAGTTAACGCTGCTGTTTTGCAGGATTCAGAAGAGTTCCCGCCGTTGG
GTTAA