Gcaud3684.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3684.t1
Unique NameGcaud3684.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_186_length_39306_cov_4.151447contigNODE_186_length_39306_cov_4.151447:28462..29823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_6137
Preferred nameargD
PFAMsAminotran_3
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00006,RC00062
KEGG koko:K00821
KEGG ReactionR02283,R04475
KEGG Pathwayko00220,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00220,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00028,M00845
GOsGO:0003674,GO:0005488,GO:0005515,GO:0008144,GO:0019842,GO:0030170,GO:0036094,GO:0042802,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363
Evalue1.03e-164
EggNOG OGsCOG4992@1|root,COG4992@2|Bacteria,1G0KF@1117|Cyanobacteria,1H91B@1150|Oscillatoriales
EC2.6.1.11,2.6.1.17
DescriptionTIGRFAM acetylornithine and succinylornithine transaminases
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3684Gcaud3684Gracilaria caudata M_176_S67 malegeneNODE_186_length_39306_cov_4.151447 28462..29823 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3684.t1.start1Gcaud3684.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_186_length_39306_cov_4.151447 28462..28464 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3684.t1.CDS1Gcaud3684.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_186_length_39306_cov_4.151447 28462..29823 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3684.t1.exon1Gcaud3684.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_186_length_39306_cov_4.151447 28462..29823 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3684.t1.stop1Gcaud3684.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_186_length_39306_cov_4.151447 29821..29823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3684.t1Gcaud3684.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_186_length_39306_cov_4.151447 28462..29823 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3684.t1 ID=Gcaud3684.t1|Name=Gcaud3684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=454bp
MSLAFSAPSFTRSFISPLSQSTTPTLTRTKPPCVVSAPRVHTPSAVATDA
MKLSMPKDFDSVVMSTYARYPIAMSHGQGVDLYDTEGTHYIDCVAGIATC
TLGHAHPALIDAITRQMSRITHVSNLYYIPEQGALASWLVSNSPADKAFF
CNSGGEANEAAIKLARKHWHLKHGSNPSDVPVIITAHQSFHGRTIATLTA
TGQPKYHKNWWPLVSGFQYVTYNDTDELIKLADSIGDNLAGIIMEACQGE
GGIHPGSPEFFKAARQICDNTGALLICDEVQVGVGRTGKLWGFEHTGVEP
DVFTLAKGLGGGVPIGAMCCKAKCDVFEPGDHASTFGGNPLAAAAGLAVA
KELDSGVVRNAEERGAQLMTGLRQLAKRFPGVIKEVRGLGLICGVEMEQM
AASDIVAKAMSEGLLLVPAGKHVVRFVPPLIISREQVIRVLDIFESVMVT
LAG*
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spliced messenger RNA

>Gcaud3684.t1 ID=Gcaud3684.t1|Name=Gcaud3684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:28462..29823+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTGCCTTCTCCGCTCCGTCGTTTACGCGGTCCTTCATATCACC
GCTCTCACAAAGCACTACACCCACGCTAACTCGCACCAAGCCCCCGTGTG
TCGTATCTGCACCGCGCGTTCACACACCAAGCGCGGTGGCAACTGACGCA
ATGAAGCTCTCGATGCCAAAGGACTTTGATTCCGTCGTGATGAGCACATA
TGCTCGTTATCCTATCGCAATGTCTCATGGACAAGGTGTTGATCTTTACG
ACACTGAGGGCACTCACTACATCGACTGTGTGGCGGGCATTGCTACCTGC
ACTCTTGGTCATGCTCATCCCGCTCTAATCGACGCCATAACTCGCCAGAT
GTCGCGCATTACCCACGTTTCAAACCTCTACTACATCCCTGAACAAGGCG
CGCTGGCCTCGTGGCTTGTATCAAACTCACCGGCAGACAAGGCCTTCTTC
TGCAACTCTGGTGGAGAGGCAAACGAGGCTGCCATCAAGCTTGCTCGAAA
GCACTGGCATCTCAAACACGGTTCCAATCCGTCCGATGTTCCAGTTATCA
TCACCGCTCACCAATCTTTTCACGGCCGAACCATAGCCACTCTCACAGCG
ACTGGTCAGCCCAAGTATCATAAAAACTGGTGGCCCCTTGTGTCAGGTTT
CCAGTATGTTACCTATAACGACACCGATGAGCTCATCAAGCTGGCAGATA
GTATAGGAGACAATCTCGCTGGAATCATAATGGAAGCATGTCAGGGTGAA
GGCGGAATCCACCCGGGTTCGCCCGAGTTTTTCAAAGCAGCACGCCAGAT
TTGCGATAACACTGGTGCCTTGCTGATATGCGATGAGGTACAAGTGGGCG
TAGGTCGAACCGGTAAGCTGTGGGGTTTCGAACACACTGGCGTTGAACCG
GACGTTTTCACGCTGGCGAAGGGACTCGGTGGCGGTGTTCCAATTGGAGC
CATGTGCTGCAAGGCCAAGTGTGACGTTTTCGAACCAGGAGATCATGCCA
GTACGTTTGGTGGTAACCCTCTCGCTGCTGCGGCTGGTCTGGCCGTGGCG
AAGGAGTTGGACTCAGGAGTTGTACGCAACGCTGAAGAGCGCGGTGCGCA
GTTGATGACTGGGTTACGACAACTTGCGAAACGATTCCCAGGTGTGATCA
AGGAGGTGCGCGGTCTTGGTCTCATATGCGGTGTTGAGATGGAGCAGATG
GCTGCTTCTGACATTGTTGCGAAGGCTATGAGCGAAGGTCTGCTGCTTGT
ACCGGCGGGGAAACATGTGGTGCGATTCGTACCGCCGCTGATCATTTCGC
GAGAGCAAGTTATTCGCGTTCTAGACATATTTGAAAGCGTGATGGTGACG
CTCGCTGGTTGA
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protein sequence of Gcaud3684.t1

>Gcaud3684.t1 ID=Gcaud3684.t1|Name=Gcaud3684.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=454bp
MSLAFSAPSFTRSFISPLSQSTTPTLTRTKPPCVVSAPRVHTPSAVATDA
MKLSMPKDFDSVVMSTYARYPIAMSHGQGVDLYDTEGTHYIDCVAGIATC
TLGHAHPALIDAITRQMSRITHVSNLYYIPEQGALASWLVSNSPADKAFF
CNSGGEANEAAIKLARKHWHLKHGSNPSDVPVIITAHQSFHGRTIATLTA
TGQPKYHKNWWPLVSGFQYVTYNDTDELIKLADSIGDNLAGIIMEACQGE
GGIHPGSPEFFKAARQICDNTGALLICDEVQVGVGRTGKLWGFEHTGVEP
DVFTLAKGLGGGVPIGAMCCKAKCDVFEPGDHASTFGGNPLAAAAGLAVA
KELDSGVVRNAEERGAQLMTGLRQLAKRFPGVIKEVRGLGLICGVEMEQM
AASDIVAKAMSEGLLLVPAGKHVVRFVPPLIISREQVIRVLDIFESVMVT
LAG*
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mRNA from alignment at NODE_186_length_39306_cov_4.151447:28462..29823+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3684.t1 ID=Gcaud3684.t1|Name=Gcaud3684.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:28462..29823+ (Gracilaria caudata M_176_S67 male)
ATGTCGCTTGCCTTCTCCGCTCCGTCGTTTACGCGGTCCTTCATATCACC
GCTCTCACAAAGCACTACACCCACGCTAACTCGCACCAAGCCCCCGTGTG
TCGTATCTGCACCGCGCGTTCACACACCAAGCGCGGTGGCAACTGACGCA
ATGAAGCTCTCGATGCCAAAGGACTTTGATTCCGTCGTGATGAGCACATA
TGCTCGTTATCCTATCGCAATGTCTCATGGACAAGGTGTTGATCTTTACG
ACACTGAGGGCACTCACTACATCGACTGTGTGGCGGGCATTGCTACCTGC
ACTCTTGGTCATGCTCATCCCGCTCTAATCGACGCCATAACTCGCCAGAT
GTCGCGCATTACCCACGTTTCAAACCTCTACTACATCCCTGAACAAGGCG
CGCTGGCCTCGTGGCTTGTATCAAACTCACCGGCAGACAAGGCCTTCTTC
TGCAACTCTGGTGGAGAGGCAAACGAGGCTGCCATCAAGCTTGCTCGAAA
GCACTGGCATCTCAAACACGGTTCCAATCCGTCCGATGTTCCAGTTATCA
TCACCGCTCACCAATCTTTTCACGGCCGAACCATAGCCACTCTCACAGCG
ACTGGTCAGCCCAAGTATCATAAAAACTGGTGGCCCCTTGTGTCAGGTTT
CCAGTATGTTACCTATAACGACACCGATGAGCTCATCAAGCTGGCAGATA
GTATAGGAGACAATCTCGCTGGAATCATAATGGAAGCATGTCAGGGTGAA
GGCGGAATCCACCCGGGTTCGCCCGAGTTTTTCAAAGCAGCACGCCAGAT
TTGCGATAACACTGGTGCCTTGCTGATATGCGATGAGGTACAAGTGGGCG
TAGGTCGAACCGGTAAGCTGTGGGGTTTCGAACACACTGGCGTTGAACCG
GACGTTTTCACGCTGGCGAAGGGACTCGGTGGCGGTGTTCCAATTGGAGC
CATGTGCTGCAAGGCCAAGTGTGACGTTTTCGAACCAGGAGATCATGCCA
GTACGTTTGGTGGTAACCCTCTCGCTGCTGCGGCTGGTCTGGCCGTGGCG
AAGGAGTTGGACTCAGGAGTTGTACGCAACGCTGAAGAGCGCGGTGCGCA
GTTGATGACTGGGTTACGACAACTTGCGAAACGATTCCCAGGTGTGATCA
AGGAGGTGCGCGGTCTTGGTCTCATATGCGGTGTTGAGATGGAGCAGATG
GCTGCTTCTGACATTGTTGCGAAGGCTATGAGCGAAGGTCTGCTGCTTGT
ACCGGCGGGGAAACATGTGGTGCGATTCGTACCGCCGCTGATCATTTCGC
GAGAGCAAGTTATTCGCGTTCTAGACATATTTGAAAGCGTGATGGTGACG
CTCGCTGGTTGA
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Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:28462..29823+

>Gcaud3684.t1 ID=Gcaud3684.t1|Name=Gcaud3684.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1362bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:28462..29823+ (Gracilaria caudata M_176_S67 male)
ATGTCGCTTGCCTTCTCCGCTCCGTCGTTTACGCGGTCCTTCATATCACC
GCTCTCACAAAGCACTACACCCACGCTAACTCGCACCAAGCCCCCGTGTG
TCGTATCTGCACCGCGCGTTCACACACCAAGCGCGGTGGCAACTGACGCA
ATGAAGCTCTCGATGCCAAAGGACTTTGATTCCGTCGTGATGAGCACATA
TGCTCGTTATCCTATCGCAATGTCTCATGGACAAGGTGTTGATCTTTACG
ACACTGAGGGCACTCACTACATCGACTGTGTGGCGGGCATTGCTACCTGC
ACTCTTGGTCATGCTCATCCCGCTCTAATCGACGCCATAACTCGCCAGAT
GTCGCGCATTACCCACGTTTCAAACCTCTACTACATCCCTGAACAAGGCG
CGCTGGCCTCGTGGCTTGTATCAAACTCACCGGCAGACAAGGCCTTCTTC
TGCAACTCTGGTGGAGAGGCAAACGAGGCTGCCATCAAGCTTGCTCGAAA
GCACTGGCATCTCAAACACGGTTCCAATCCGTCCGATGTTCCAGTTATCA
TCACCGCTCACCAATCTTTTCACGGCCGAACCATAGCCACTCTCACAGCG
ACTGGTCAGCCCAAGTATCATAAAAACTGGTGGCCCCTTGTGTCAGGTTT
CCAGTATGTTACCTATAACGACACCGATGAGCTCATCAAGCTGGCAGATA
GTATAGGAGACAATCTCGCTGGAATCATAATGGAAGCATGTCAGGGTGAA
GGCGGAATCCACCCGGGTTCGCCCGAGTTTTTCAAAGCAGCACGCCAGAT
TTGCGATAACACTGGTGCCTTGCTGATATGCGATGAGGTACAAGTGGGCG
TAGGTCGAACCGGTAAGCTGTGGGGTTTCGAACACACTGGCGTTGAACCG
GACGTTTTCACGCTGGCGAAGGGACTCGGTGGCGGTGTTCCAATTGGAGC
CATGTGCTGCAAGGCCAAGTGTGACGTTTTCGAACCAGGAGATCATGCCA
GTACGTTTGGTGGTAACCCTCTCGCTGCTGCGGCTGGTCTGGCCGTGGCG
AAGGAGTTGGACTCAGGAGTTGTACGCAACGCTGAAGAGCGCGGTGCGCA
GTTGATGACTGGGTTACGACAACTTGCGAAACGATTCCCAGGTGTGATCA
AGGAGGTGCGCGGTCTTGGTCTCATATGCGGTGTTGAGATGGAGCAGATG
GCTGCTTCTGACATTGTTGCGAAGGCTATGAGCGAAGGTCTGCTGCTTGT
ACCGGCGGGGAAACATGTGGTGCGATTCGTACCGCCGCTGATCATTTCGC
GAGAGCAAGTTATTCGCGTTCTAGACATATTTGAAAGCGTGATGGTGACG
CTCGCTGGTTGA
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