Gcaud3675.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3675.t2
Unique Name	Gcaud3675.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:8654..10387 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3675	Gcaud3675	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 8654..10387 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3675.t2.start1	Gcaud3675.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 8654..8656 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3675.t2.CDS1	Gcaud3675.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 8654..10387 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3675.t2.exon1	Gcaud3675.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 8654..10387 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3675.t2.stop1	Gcaud3675.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 10385..10387 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3675.t2	Gcaud3675.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 8654..10387 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+

mRNA sequence

>Gcaud3675.t2 ID=Gcaud3675.t2|Name=Gcaud3675.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=578bp
MAFWKPSVASLTAFFERESRQEHRRDNNRSDDKSGPDSPRGQPGDAKGNL
SSPRHGATDEFDAMVRDMWNEIVRHVRDSQSGSIDEIFTAAGDNLKNKMS
VNVAQEVYKRELIAVLEALHTLRTSKGGNEACVISEEQATINSLKRRLKD
VTEDAKNAKEVLKWVTKEKGELEYICEEHEEKRRKLAKLLKAAEKDNEEL
RANVSSLSKANKGLEVDVERLLAVRSAVDVEMLKAHHKAELAEMVAKQES
LRCKKLEEQLKKAESSSDLVHKHVAELERVLQDMTGLLNNITDNPEQPRS
HWMGGQVESLIHKSSRLLGRFGISRSRDRDEDRSPVNDGDRNGATVMQAR
DAILEDPPAPRIGKKWSLGLLSNPNNGNGDDTNPGLFHRITSRFRREGSG
EHSDTEIRKGKVNSSRNNERAERRASGNERQEADCTRSANSKLVDLRRIL
SRSTQSNHRSQVRCSDPQAIEYMSKTLEALEKNLESLRDVVDFKDEELHH
LNRKLRDAVKLSDAFEKGLKQEFQKRMEAEEMLAAKGGESTGCEKGSSVL
KKSADTFGKAESSVRDKVTVRWSCRWF*

spliced messenger RNA

>Gcaud3675.t2 ID=Gcaud3675.t2|Name=Gcaud3675.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCTGGAAACCATCTGTCGCGAGCTTGACTGCATTCTTCGAGAG
GGAATCCCGCCAGGAACATCGTCGGGACAACAATAGGAGCGATGACAAGA
GCGGTCCTGATTCTCCGAGGGGTCAGCCAGGAGATGCAAAAGGCAATCTT
TCTTCCCCGCGTCATGGTGCTACAGATGAGTTCGACGCCATGGTCCGCGA
TATGTGGAATGAAATTGTGAGGCACGTGCGGGACAGCCAGTCCGGAAGCA
TAGATGAGATTTTCACCGCAGCTGGCGATAATCTGAAGAACAAGATGTCG
GTAAACGTCGCCCAAGAAGTGTACAAGCGGGAGCTCATCGCCGTGTTGGA
AGCGCTTCATACTTTGCGTACCTCGAAGGGTGGGAATGAGGCCTGCGTCA
TTAGTGAGGAACAGGCAACCATAAACTCTTTGAAGCGTCGTCTCAAGGAT
GTGACAGAAGATGCAAAGAACGCGAAGGAAGTTCTGAAGTGGGTGACGAA
GGAAAAGGGCGAGTTGGAATACATCTGCGAGGAACACGAAGAAAAACGCA
GGAAGCTCGCCAAGTTGCTGAAGGCGGCAGAGAAAGATAACGAAGAGCTG
CGAGCGAATGTCAGTTCTTTGTCGAAAGCCAATAAGGGTTTAGAGGTGGA
TGTGGAACGACTTTTAGCGGTTAGAAGTGCCGTCGATGTGGAGATGCTTA
AAGCGCATCACAAGGCCGAACTGGCGGAAATGGTTGCCAAGCAGGAGTCG
TTGCGTTGTAAGAAGCTTGAGGAGCAGCTGAAGAAAGCAGAGAGTTCTTC
GGACCTAGTTCACAAACATGTGGCCGAACTTGAGAGGGTTTTGCAGGACA
TGACGGGGCTTCTCAACAACATTACCGACAACCCGGAACAGCCTAGATCG
CACTGGATGGGAGGTCAGGTTGAGTCGTTGATACACAAAAGTTCACGACT
CCTGGGGCGGTTCGGGATTTCGCGTTCTCGAGACAGGGATGAAGACAGGT
CTCCGGTAAACGACGGCGACAGGAATGGAGCAACGGTGATGCAAGCCCGG
GACGCCATTTTGGAGGATCCACCAGCACCGAGGATTGGGAAGAAGTGGTC
ACTGGGTTTGTTGTCCAACCCAAACAACGGGAACGGGGACGACACTAATC
CAGGGTTGTTTCACAGAATAACCAGCCGTTTTCGACGGGAAGGAAGTGGG
GAACATAGTGATACCGAGATTCGTAAAGGGAAGGTCAACAGCTCCCGCAA
CAACGAGCGCGCAGAACGCAGAGCTTCGGGTAACGAACGCCAGGAAGCTG
ACTGTACAAGGTCGGCAAACTCGAAACTGGTGGACTTGAGGCGTATTCTC
TCCAGGAGTACGCAGTCCAATCATCGAAGTCAGGTGCGATGCAGTGACCC
CCAAGCGATCGAGTACATGTCAAAGACGCTGGAGGCGCTTGAGAAGAATC
TCGAGAGTTTACGAGATGTGGTGGACTTTAAAGATGAGGAATTACACCAC
CTTAATCGGAAGCTTCGAGATGCAGTCAAACTTTCGGACGCATTCGAAAA
AGGGCTGAAGCAAGAATTCCAAAAGCGTATGGAAGCAGAGGAGATGTTGG
CTGCGAAGGGCGGGGAGTCTACAGGGTGTGAGAAAGGGAGCAGCGTTTTG
AAGAAAAGTGCTGATACTTTTGGAAAGGCAGAGAGCAGCGTGCGCGACAA
AGTCACGGTGCGTTGGTCATGCCGGTGGTTCTAG

protein sequence of Gcaud3675.t2

>Gcaud3675.t2 ID=Gcaud3675.t2|Name=Gcaud3675.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=578bp
MAFWKPSVASLTAFFERESRQEHRRDNNRSDDKSGPDSPRGQPGDAKGNL
SSPRHGATDEFDAMVRDMWNEIVRHVRDSQSGSIDEIFTAAGDNLKNKMS
VNVAQEVYKRELIAVLEALHTLRTSKGGNEACVISEEQATINSLKRRLKD
VTEDAKNAKEVLKWVTKEKGELEYICEEHEEKRRKLAKLLKAAEKDNEEL
RANVSSLSKANKGLEVDVERLLAVRSAVDVEMLKAHHKAELAEMVAKQES
LRCKKLEEQLKKAESSSDLVHKHVAELERVLQDMTGLLNNITDNPEQPRS
HWMGGQVESLIHKSSRLLGRFGISRSRDRDEDRSPVNDGDRNGATVMQAR
DAILEDPPAPRIGKKWSLGLLSNPNNGNGDDTNPGLFHRITSRFRREGSG
EHSDTEIRKGKVNSSRNNERAERRASGNERQEADCTRSANSKLVDLRRIL
SRSTQSNHRSQVRCSDPQAIEYMSKTLEALEKNLESLRDVVDFKDEELHH
LNRKLRDAVKLSDAFEKGLKQEFQKRMEAEEMLAAKGGESTGCEKGSSVL
KKSADTFGKAESSVRDKVTVRWSCRWF*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3675.t2 ID=Gcaud3675.t2|Name=Gcaud3675.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCTGGAAACCATCTGTCGCGAGCTTGACTGCATTCTTCGAGAG
GGAATCCCGCCAGGAACATCGTCGGGACAACAATAGGAGCGATGACAAGA
GCGGTCCTGATTCTCCGAGGGGTCAGCCAGGAGATGCAAAAGGCAATCTT
TCTTCCCCGCGTCATGGTGCTACAGATGAGTTCGACGCCATGGTCCGCGA
TATGTGGAATGAAATTGTGAGGCACGTGCGGGACAGCCAGTCCGGAAGCA
TAGATGAGATTTTCACCGCAGCTGGCGATAATCTGAAGAACAAGATGTCG
GTAAACGTCGCCCAAGAAGTGTACAAGCGGGAGCTCATCGCCGTGTTGGA
AGCGCTTCATACTTTGCGTACCTCGAAGGGTGGGAATGAGGCCTGCGTCA
TTAGTGAGGAACAGGCAACCATAAACTCTTTGAAGCGTCGTCTCAAGGAT
GTGACAGAAGATGCAAAGAACGCGAAGGAAGTTCTGAAGTGGGTGACGAA
GGAAAAGGGCGAGTTGGAATACATCTGCGAGGAACACGAAGAAAAACGCA
GGAAGCTCGCCAAGTTGCTGAAGGCGGCAGAGAAAGATAACGAAGAGCTG
CGAGCGAATGTCAGTTCTTTGTCGAAAGCCAATAAGGGTTTAGAGGTGGA
TGTGGAACGACTTTTAGCGGTTAGAAGTGCCGTCGATGTGGAGATGCTTA
AAGCGCATCACAAGGCCGAACTGGCGGAAATGGTTGCCAAGCAGGAGTCG
TTGCGTTGTAAGAAGCTTGAGGAGCAGCTGAAGAAAGCAGAGAGTTCTTC
GGACCTAGTTCACAAACATGTGGCCGAACTTGAGAGGGTTTTGCAGGACA
TGACGGGGCTTCTCAACAACATTACCGACAACCCGGAACAGCCTAGATCG
CACTGGATGGGAGGTCAGGTTGAGTCGTTGATACACAAAAGTTCACGACT
CCTGGGGCGGTTCGGGATTTCGCGTTCTCGAGACAGGGATGAAGACAGGT
CTCCGGTAAACGACGGCGACAGGAATGGAGCAACGGTGATGCAAGCCCGG
GACGCCATTTTGGAGGATCCACCAGCACCGAGGATTGGGAAGAAGTGGTC
ACTGGGTTTGTTGTCCAACCCAAACAACGGGAACGGGGACGACACTAATC
CAGGGTTGTTTCACAGAATAACCAGCCGTTTTCGACGGGAAGGAAGTGGG
GAACATAGTGATACCGAGATTCGTAAAGGGAAGGTCAACAGCTCCCGCAA
CAACGAGCGCGCAGAACGCAGAGCTTCGGGTAACGAACGCCAGGAAGCTG
ACTGTACAAGGTCGGCAAACTCGAAACTGGTGGACTTGAGGCGTATTCTC
TCCAGGAGTACGCAGTCCAATCATCGAAGTCAGGTGCGATGCAGTGACCC
CCAAGCGATCGAGTACATGTCAAAGACGCTGGAGGCGCTTGAGAAGAATC
TCGAGAGTTTACGAGATGTGGTGGACTTTAAAGATGAGGAATTACACCAC
CTTAATCGGAAGCTTCGAGATGCAGTCAAACTTTCGGACGCATTCGAAAA
AGGGCTGAAGCAAGAATTCCAAAAGCGTATGGAAGCAGAGGAGATGTTGG
CTGCGAAGGGCGGGGAGTCTACAGGGTGTGAGAAAGGGAGCAGCGTTTTG
AAGAAAAGTGCTGATACTTTTGGAAAGGCAGAGAGCAGCGTGCGCGACAA
AGTCACGGTGCGTTGGTCATGCCGGTGGTTCTAG

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+

>Gcaud3675.t2 ID=Gcaud3675.t2|Name=Gcaud3675.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1734bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:8654..10387+ (Gracilaria caudata M_176_S67 male)
ATGGCTTTCTGGAAACCATCTGTCGCGAGCTTGACTGCATTCTTCGAGAG
GGAATCCCGCCAGGAACATCGTCGGGACAACAATAGGAGCGATGACAAGA
GCGGTCCTGATTCTCCGAGGGGTCAGCCAGGAGATGCAAAAGGCAATCTT
TCTTCCCCGCGTCATGGTGCTACAGATGAGTTCGACGCCATGGTCCGCGA
TATGTGGAATGAAATTGTGAGGCACGTGCGGGACAGCCAGTCCGGAAGCA
TAGATGAGATTTTCACCGCAGCTGGCGATAATCTGAAGAACAAGATGTCG
GTAAACGTCGCCCAAGAAGTGTACAAGCGGGAGCTCATCGCCGTGTTGGA
AGCGCTTCATACTTTGCGTACCTCGAAGGGTGGGAATGAGGCCTGCGTCA
TTAGTGAGGAACAGGCAACCATAAACTCTTTGAAGCGTCGTCTCAAGGAT
GTGACAGAAGATGCAAAGAACGCGAAGGAAGTTCTGAAGTGGGTGACGAA
GGAAAAGGGCGAGTTGGAATACATCTGCGAGGAACACGAAGAAAAACGCA
GGAAGCTCGCCAAGTTGCTGAAGGCGGCAGAGAAAGATAACGAAGAGCTG
CGAGCGAATGTCAGTTCTTTGTCGAAAGCCAATAAGGGTTTAGAGGTGGA
TGTGGAACGACTTTTAGCGGTTAGAAGTGCCGTCGATGTGGAGATGCTTA
AAGCGCATCACAAGGCCGAACTGGCGGAAATGGTTGCCAAGCAGGAGTCG
TTGCGTTGTAAGAAGCTTGAGGAGCAGCTGAAGAAAGCAGAGAGTTCTTC
GGACCTAGTTCACAAACATGTGGCCGAACTTGAGAGGGTTTTGCAGGACA
TGACGGGGCTTCTCAACAACATTACCGACAACCCGGAACAGCCTAGATCG
CACTGGATGGGAGGTCAGGTTGAGTCGTTGATACACAAAAGTTCACGACT
CCTGGGGCGGTTCGGGATTTCGCGTTCTCGAGACAGGGATGAAGACAGGT
CTCCGGTAAACGACGGCGACAGGAATGGAGCAACGGTGATGCAAGCCCGG
GACGCCATTTTGGAGGATCCACCAGCACCGAGGATTGGGAAGAAGTGGTC
ACTGGGTTTGTTGTCCAACCCAAACAACGGGAACGGGGACGACACTAATC
CAGGGTTGTTTCACAGAATAACCAGCCGTTTTCGACGGGAAGGAAGTGGG
GAACATAGTGATACCGAGATTCGTAAAGGGAAGGTCAACAGCTCCCGCAA
CAACGAGCGCGCAGAACGCAGAGCTTCGGGTAACGAACGCCAGGAAGCTG
ACTGTACAAGGTCGGCAAACTCGAAACTGGTGGACTTGAGGCGTATTCTC
TCCAGGAGTACGCAGTCCAATCATCGAAGTCAGGTGCGATGCAGTGACCC
CCAAGCGATCGAGTACATGTCAAAGACGCTGGAGGCGCTTGAGAAGAATC
TCGAGAGTTTACGAGATGTGGTGGACTTTAAAGATGAGGAATTACACCAC
CTTAATCGGAAGCTTCGAGATGCAGTCAAACTTTCGGACGCATTCGAAAA
AGGGCTGAAGCAAGAATTCCAAAAGCGTATGGAAGCAGAGGAGATGTTGG
CTGCGAAGGGCGGGGAGTCTACAGGGTGTGAGAAAGGGAGCAGCGTTTTG
AAGAAAAGTGCTGATACTTTTGGAAAGGCAGAGAGCAGCGTGCGCGACAA
AGTCACGGTGCGTTGGTCATGCCGGTGGTTCTAG