Gcaud3674.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3674.t1
Unique Name	Gcaud3674.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:6184..7386 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003284078.1
PFAMs	Pkinase
Max annot lvl	554915\|Amoebozoa
GOs	GO:0000166,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0019220,GO:0019222,GO:0019538,GO:0023014,GO:0023052,GO:0030554,GO:0031098,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0033674,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045859,GO:0045860,GO:0045937,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564
Evalue	1.4e-12
EggNOG OGs	KOG0574@1\|root,KOG0574@2759\|Eukaryota,3XEP7@554915\|Amoebozoa
Description	Serine/Threonine protein kinases, catalytic domain
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3674	Gcaud3674	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 6184..7386 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3674.t1.start1	Gcaud3674.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 6184..6186 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3674.t1.CDS1	Gcaud3674.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 6184..7386 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3674.t1.exon1	Gcaud3674.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 6184..7386 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3674.t1.stop1	Gcaud3674.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 7384..7386 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3674.t1	Gcaud3674.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 6184..7386 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+

mRNA sequence

>Gcaud3674.t1 ID=Gcaud3674.t1|Name=Gcaud3674.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=401bp
MSIDSAASDDVVHGTGIYAVDPTEIFVPGAVLSEQHDFGILLSATVRGSY
VSQIGFANVSIRILSITNVEADALRTVVARVNDRITSPVVLKYVGVWKRA
SETWLVSERRRQVSASVLFENIQFTDPESIVSHVVNKALSCLRVLHDEYL
TSHLSVSPSSIYICDDASVCLGDIAIYSVLYASIKSTRSCSGAKLWPLPP
TISFKYRRGIHSEDVWDLGIAVLTLIDGSAAVARMWRSDMRVPHLANPNK
WSAQLNNFLARLFTQGPIPSCSELLSHRFVADASSTACLAAVTEYFERCA
DLIAEPYRQDIINTLYLKNDVAIQAPLISIDDYSTDLFSCDQWSSVDPDR
PTVELSLERMLANCNQKPLTVDVEKNKGMQRTVGTMQTFLETADAEWNPL
*

spliced messenger RNA

>Gcaud3674.t1 ID=Gcaud3674.t1|Name=Gcaud3674.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCATCGACTCTGCCGCTTCCGACGATGTCGTACACGGCACCGGCAT
TTACGCTGTAGACCCCACCGAGATCTTCGTTCCAGGCGCCGTGCTCAGTG
AGCAGCATGATTTCGGTATCCTGCTTTCGGCCACGGTTCGCGGGTCGTAT
GTATCACAGATAGGCTTTGCAAACGTTTCCATTCGTATCTTGTCCATCAC
CAATGTCGAGGCTGATGCGTTGCGAACAGTAGTTGCGCGCGTCAATGACC
GGATCACTTCACCTGTTGTTCTCAAGTACGTTGGCGTTTGGAAGCGAGCT
TCGGAGACGTGGCTTGTTTCCGAGAGACGTCGCCAAGTGTCTGCATCGGT
TCTGTTTGAGAATATTCAGTTCACAGATCCGGAATCCATTGTGTCGCATG
TTGTCAACAAAGCATTGAGCTGTTTGCGCGTTCTTCACGACGAGTATCTC
ACGTCTCATTTGTCAGTGAGTCCATCGAGTATCTACATCTGTGACGACGC
TTCTGTGTGTCTCGGTGACATTGCAATCTATTCCGTGCTTTACGCCAGTA
TCAAGTCAACACGTTCGTGCTCCGGTGCCAAGCTTTGGCCTTTGCCGCCC
ACCATATCGTTCAAGTATCGGCGTGGCATCCACAGCGAGGATGTTTGGGA
CTTGGGGATAGCTGTACTCACCTTGATTGATGGAAGTGCGGCAGTTGCCA
GAATGTGGCGTTCCGATATGCGAGTGCCGCATTTGGCGAACCCGAACAAG
TGGTCGGCACAGCTGAACAACTTTCTAGCGCGCTTGTTTACTCAGGGTCC
AATCCCTTCGTGTTCAGAGCTTTTATCACACCGTTTTGTAGCCGATGCCT
CTTCTACAGCATGTCTTGCGGCGGTAACCGAATACTTTGAACGATGTGCT
GACCTAATTGCTGAACCTTATCGACAGGACATTATCAACACGCTTTATCT
GAAGAATGACGTTGCCATTCAAGCACCGCTGATTAGCATAGACGACTATT
CCACCGATTTGTTTTCATGTGATCAGTGGAGTAGTGTGGACCCCGATCGA
CCAACAGTTGAACTGTCTCTGGAGCGCATGCTCGCAAACTGTAATCAAAA
GCCGTTGACAGTGGATGTTGAGAAGAATAAAGGCATGCAAAGAACGGTTG
GAACCATGCAGACGTTCCTCGAGACCGCAGATGCTGAATGGAACCCACTC
TAG

protein sequence of Gcaud3674.t1

>Gcaud3674.t1 ID=Gcaud3674.t1|Name=Gcaud3674.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=401bp
MSIDSAASDDVVHGTGIYAVDPTEIFVPGAVLSEQHDFGILLSATVRGSY
VSQIGFANVSIRILSITNVEADALRTVVARVNDRITSPVVLKYVGVWKRA
SETWLVSERRRQVSASVLFENIQFTDPESIVSHVVNKALSCLRVLHDEYL
TSHLSVSPSSIYICDDASVCLGDIAIYSVLYASIKSTRSCSGAKLWPLPP
TISFKYRRGIHSEDVWDLGIAVLTLIDGSAAVARMWRSDMRVPHLANPNK
WSAQLNNFLARLFTQGPIPSCSELLSHRFVADASSTACLAAVTEYFERCA
DLIAEPYRQDIINTLYLKNDVAIQAPLISIDDYSTDLFSCDQWSSVDPDR
PTVELSLERMLANCNQKPLTVDVEKNKGMQRTVGTMQTFLETADAEWNPL
*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3674.t1 ID=Gcaud3674.t1|Name=Gcaud3674.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+ (Gracilaria caudata M_176_S67 male)
ATGTCCATCGACTCTGCCGCTTCCGACGATGTCGTACACGGCACCGGCAT
TTACGCTGTAGACCCCACCGAGATCTTCGTTCCAGGCGCCGTGCTCAGTG
AGCAGCATGATTTCGGTATCCTGCTTTCGGCCACGGTTCGCGGGTCGTAT
GTATCACAGATAGGCTTTGCAAACGTTTCCATTCGTATCTTGTCCATCAC
CAATGTCGAGGCTGATGCGTTGCGAACAGTAGTTGCGCGCGTCAATGACC
GGATCACTTCACCTGTTGTTCTCAAGTACGTTGGCGTTTGGAAGCGAGCT
TCGGAGACGTGGCTTGTTTCCGAGAGACGTCGCCAAGTGTCTGCATCGGT
TCTGTTTGAGAATATTCAGTTCACAGATCCGGAATCCATTGTGTCGCATG
TTGTCAACAAAGCATTGAGCTGTTTGCGCGTTCTTCACGACGAGTATCTC
ACGTCTCATTTGTCAGTGAGTCCATCGAGTATCTACATCTGTGACGACGC
TTCTGTGTGTCTCGGTGACATTGCAATCTATTCCGTGCTTTACGCCAGTA
TCAAGTCAACACGTTCGTGCTCCGGTGCCAAGCTTTGGCCTTTGCCGCCC
ACCATATCGTTCAAGTATCGGCGTGGCATCCACAGCGAGGATGTTTGGGA
CTTGGGGATAGCTGTACTCACCTTGATTGATGGAAGTGCGGCAGTTGCCA
GAATGTGGCGTTCCGATATGCGAGTGCCGCATTTGGCGAACCCGAACAAG
TGGTCGGCACAGCTGAACAACTTTCTAGCGCGCTTGTTTACTCAGGGTCC
AATCCCTTCGTGTTCAGAGCTTTTATCACACCGTTTTGTAGCCGATGCCT
CTTCTACAGCATGTCTTGCGGCGGTAACCGAATACTTTGAACGATGTGCT
GACCTAATTGCTGAACCTTATCGACAGGACATTATCAACACGCTTTATCT
GAAGAATGACGTTGCCATTCAAGCACCGCTGATTAGCATAGACGACTATT
CCACCGATTTGTTTTCATGTGATCAGTGGAGTAGTGTGGACCCCGATCGA
CCAACAGTTGAACTGTCTCTGGAGCGCATGCTCGCAAACTGTAATCAAAA
GCCGTTGACAGTGGATGTTGAGAAGAATAAAGGCATGCAAAGAACGGTTG
GAACCATGCAGACGTTCCTCGAGACCGCAGATGCTGAATGGAACCCACTC
TAG

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+

>Gcaud3674.t1 ID=Gcaud3674.t1|Name=Gcaud3674.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1203bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:6184..7386+ (Gracilaria caudata M_176_S67 male)
ATGTCCATCGACTCTGCCGCTTCCGACGATGTCGTACACGGCACCGGCAT
TTACGCTGTAGACCCCACCGAGATCTTCGTTCCAGGCGCCGTGCTCAGTG
AGCAGCATGATTTCGGTATCCTGCTTTCGGCCACGGTTCGCGGGTCGTAT
GTATCACAGATAGGCTTTGCAAACGTTTCCATTCGTATCTTGTCCATCAC
CAATGTCGAGGCTGATGCGTTGCGAACAGTAGTTGCGCGCGTCAATGACC
GGATCACTTCACCTGTTGTTCTCAAGTACGTTGGCGTTTGGAAGCGAGCT
TCGGAGACGTGGCTTGTTTCCGAGAGACGTCGCCAAGTGTCTGCATCGGT
TCTGTTTGAGAATATTCAGTTCACAGATCCGGAATCCATTGTGTCGCATG
TTGTCAACAAAGCATTGAGCTGTTTGCGCGTTCTTCACGACGAGTATCTC
ACGTCTCATTTGTCAGTGAGTCCATCGAGTATCTACATCTGTGACGACGC
TTCTGTGTGTCTCGGTGACATTGCAATCTATTCCGTGCTTTACGCCAGTA
TCAAGTCAACACGTTCGTGCTCCGGTGCCAAGCTTTGGCCTTTGCCGCCC
ACCATATCGTTCAAGTATCGGCGTGGCATCCACAGCGAGGATGTTTGGGA
CTTGGGGATAGCTGTACTCACCTTGATTGATGGAAGTGCGGCAGTTGCCA
GAATGTGGCGTTCCGATATGCGAGTGCCGCATTTGGCGAACCCGAACAAG
TGGTCGGCACAGCTGAACAACTTTCTAGCGCGCTTGTTTACTCAGGGTCC
AATCCCTTCGTGTTCAGAGCTTTTATCACACCGTTTTGTAGCCGATGCCT
CTTCTACAGCATGTCTTGCGGCGGTAACCGAATACTTTGAACGATGTGCT
GACCTAATTGCTGAACCTTATCGACAGGACATTATCAACACGCTTTATCT
GAAGAATGACGTTGCCATTCAAGCACCGCTGATTAGCATAGACGACTATT
CCACCGATTTGTTTTCATGTGATCAGTGGAGTAGTGTGGACCCCGATCGA
CCAACAGTTGAACTGTCTCTGGAGCGCATGCTCGCAAACTGTAATCAAAA
GCCGTTGACAGTGGATGTTGAGAAGAATAAAGGCATGCAAAGAACGGTTG
GAACCATGCAGACGTTCCTCGAGACCGCAGATGCTGAATGGAACCCACTC
TAG