Gcaud3673.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3673.t1
Unique Name	Gcaud3673.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	236

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:5283..5990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703339.1
Preferred name	BUD31
PFAMs	G10
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01369,ko:K12873,ko:K17285
KEGG Pathway	ko03040,ko04142,ko04612,map03040,map04142,map04612
KEGG Module	M00355
GOs	GO:0000278,GO:0000281,GO:0000282,GO:0000375,GO:0000377,GO:0000398,GO:0000910,GO:0003674,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007163,GO:0008134,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010469,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010647,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023051,GO:0023056,GO:0030010,GO:0030374,GO:0030532,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0033143,GO:0033145,GO:0034641,GO:0035257,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051301,GO:0051427,GO:0060255,GO:0060765,GO:0061640,GO:0065007,GO:0065009,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0080090,GO:0090304,GO:0097525,GO:0120114,GO:0140110,GO:1901360,GO:1902494,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000273,GO:2000823,GO:2000825,GO:2001141
Evalue	5.54e-65
EggNOG OGs	COG5132@1\|root,KOG3404@2759\|Eukaryota
EC	3.4.22.34
Description	Protein BUD31 homolog
COG category	DK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3673	Gcaud3673	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 5283..5990 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3673.t1.start1	Gcaud3673.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 5283..5285 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3673.t1.CDS1	Gcaud3673.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 5283..5990 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3673.t1.exon1	Gcaud3673.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 5283..5990 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3673.t1.stop1	Gcaud3673.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 5988..5990 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3673.t1	Gcaud3673.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 5283..5990 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+

mRNA sequence

>Gcaud3673.t1 ID=Gcaud3673.t1|Name=Gcaud3673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MSWRLIKKTRKAPPGIDRVLPTLEQFEAQTREALNAPPDDKRRNEISWPM
HKLHYQKNRYLHDMHYKQHAISKKLLDYLIKQKIADGKLIAKWRRPGYER
LCSLQVVTKSNMNFGGVGVCRIPLQQRRGQILPNVLTGCVSCASGDGGPI
WWDDPVPQIVKDRIAQIDPGKAQLVEQQTNAQSSEQQSSQQAAPDADAEA
HLHHGVEADADADADAPQPEQQQDAQSDQSAPSAS*

spliced messenger RNA

>Gcaud3673.t1 ID=Gcaud3673.t1|Name=Gcaud3673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTGGCGCCTCATCAAGAAGACAAGAAAGGCGCCGCCTGGAATCGA
CAGGGTGCTTCCCACGCTCGAGCAGTTCGAGGCACAGACGCGTGAGGCGC
TCAACGCGCCGCCCGATGACAAGCGACGCAACGAGATCTCGTGGCCAATG
CACAAGCTGCACTACCAGAAGAACCGCTATCTGCACGACATGCACTACAA
GCAGCACGCCATCAGCAAGAAGCTTCTCGACTACCTCATCAAGCAGAAGA
TAGCGGACGGAAAGCTCATCGCCAAATGGCGACGACCGGGCTACGAACGT
CTGTGCAGTCTGCAGGTTGTCACCAAGAGCAACATGAATTTCGGAGGTGT
TGGCGTGTGTCGCATCCCGCTTCAACAGAGACGGGGACAGATTCTGCCCA
ATGTGCTTACCGGCTGCGTCAGTTGTGCGTCTGGTGACGGCGGGCCCATT
TGGTGGGACGACCCTGTGCCTCAGATCGTCAAGGATCGAATTGCTCAGAT
AGACCCGGGAAAGGCACAGCTTGTCGAACAGCAAACGAATGCGCAATCAT
CGGAACAACAATCGAGTCAGCAAgccgcacccgacgccgacgccgaagct
cacttgcatcatggcgtcgaagccgatgctgatgctgacgctgacgcACC
GCAGCCCGAGCAACAACAAGATGCTCAGAGCGATCAAAGTGCGCCATCAG
CTTCGTGA

protein sequence of Gcaud3673.t1

>Gcaud3673.t1 ID=Gcaud3673.t1|Name=Gcaud3673.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MSWRLIKKTRKAPPGIDRVLPTLEQFEAQTREALNAPPDDKRRNEISWPM
HKLHYQKNRYLHDMHYKQHAISKKLLDYLIKQKIADGKLIAKWRRPGYER
LCSLQVVTKSNMNFGGVGVCRIPLQQRRGQILPNVLTGCVSCASGDGGPI
WWDDPVPQIVKDRIAQIDPGKAQLVEQQTNAQSSEQQSSQQAAPDADAEA
HLHHGVEADADADADAPQPEQQQDAQSDQSAPSAS*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3673.t1 ID=Gcaud3673.t1|Name=Gcaud3673.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+ (Gracilaria caudata M_176_S67 male)
ATGTCCTGGCGCCTCATCAAGAAGACAAGAAAGGCGCCGCCTGGAATCGA
CAGGGTGCTTCCCACGCTCGAGCAGTTCGAGGCACAGACGCGTGAGGCGC
TCAACGCGCCGCCCGATGACAAGCGACGCAACGAGATCTCGTGGCCAATG
CACAAGCTGCACTACCAGAAGAACCGCTATCTGCACGACATGCACTACAA
GCAGCACGCCATCAGCAAGAAGCTTCTCGACTACCTCATCAAGCAGAAGA
TAGCGGACGGAAAGCTCATCGCCAAATGGCGACGACCGGGCTACGAACGT
CTGTGCAGTCTGCAGGTTGTCACCAAGAGCAACATGAATTTCGGAGGTGT
TGGCGTGTGTCGCATCCCGCTTCAACAGAGACGGGGACAGATTCTGCCCA
ATGTGCTTACCGGCTGCGTCAGTTGTGCGTCTGGTGACGGCGGGCCCATT
TGGTGGGACGACCCTGTGCCTCAGATCGTCAAGGATCGAATTGCTCAGAT
AGACCCGGGAAAGGCACAGCTTGTCGAACAGCAAACGAATGCGCAATCAT
CGGAACAACAATCGAGTCAGCAAgccgcacccgacgccgacgccgaagct
cacttgcatcatggcgtcgaagccgatgctgatgctgacgctgacgcACC
GCAGCCCGAGCAACAACAAGATGCTCAGAGCGATCAAAGTGCGCCATCAG
CTTCGTGA

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+

>Gcaud3673.t1 ID=Gcaud3673.t1|Name=Gcaud3673.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:5283..5990+ (Gracilaria caudata M_176_S67 male)
ATGTCCTGGCGCCTCATCAAGAAGACAAGAAAGGCGCCGCCTGGAATCGA
CAGGGTGCTTCCCACGCTCGAGCAGTTCGAGGCACAGACGCGTGAGGCGC
TCAACGCGCCGCCCGATGACAAGCGACGCAACGAGATCTCGTGGCCAATG
CACAAGCTGCACTACCAGAAGAACCGCTATCTGCACGACATGCACTACAA
GCAGCACGCCATCAGCAAGAAGCTTCTCGACTACCTCATCAAGCAGAAGA
TAGCGGACGGAAAGCTCATCGCCAAATGGCGACGACCGGGCTACGAACGT
CTGTGCAGTCTGCAGGTTGTCACCAAGAGCAACATGAATTTCGGAGGTGT
TGGCGTGTGTCGCATCCCGCTTCAACAGAGACGGGGACAGATTCTGCCCA
ATGTGCTTACCGGCTGCGTCAGTTGTGCGTCTGGTGACGGCGGGCCCATT
TGGTGGGACGACCCTGTGCCTCAGATCGTCAAGGATCGAATTGCTCAGAT
AGACCCGGGAAAGGCACAGCTTGTCGAACAGCAAACGAATGCGCAATCAT
CGGAACAACAATCGAGTCAGCAAgccgcacccgacgccgacgccgaagct
cacttgcatcatggcgtcgaagccgatgctgatgctgacgctgacgcACC
GCAGCCCGAGCAACAACAAGATGCTCAGAGCGATCAAAGTGCGCCATCAG
CTTCGTGA