Gcaud3672.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3672.t1
Unique NameGcaud3672.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length124
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_186_length_39306_cov_4.151447contigNODE_186_length_39306_cov_4.151447:4516..4887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA20836
Preferred nameMED22
PFAMsMed22
Max annot lvl2759|Eukaryota
KEGG koko:K15139
GOsGO:0000003,GO:0000428,GO:0000785,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005730,GO:0005737,GO:0006355,GO:0006357,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007406,GO:0008150,GO:0008285,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010721,GO:0016591,GO:0016592,GO:0019219,GO:0019222,GO:0019953,GO:0022008,GO:0022414,GO:0030154,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0042127,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0044798,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0048232,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051704,GO:0051960,GO:0051961,GO:0055029,GO:0060255,GO:0060284,GO:0061695,GO:0065007,GO:0070013,GO:0070847,GO:0072091,GO:0080090,GO:0090575,GO:1902064,GO:1902494,GO:1902680,GO:1902692,GO:1903506,GO:1903508,GO:1990234,GO:2000026,GO:2000112,GO:2000177,GO:2000178,GO:2000647,GO:2001141
Evalue2.71e-09
EggNOG OGsKOG3304@1|root,KOG3304@2759|Eukaryota
Descriptionregulation of transcription by RNA polymerase II
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3672Gcaud3672Gracilaria caudata M_176_S67 malegeneNODE_186_length_39306_cov_4.151447 4516..4887 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3672.t1.stop1Gcaud3672.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_186_length_39306_cov_4.151447 4516..4518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3672.t1.CDS1Gcaud3672.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_186_length_39306_cov_4.151447 4516..4887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3672.t1.exon1Gcaud3672.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_186_length_39306_cov_4.151447 4516..4887 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3672.t1.start1Gcaud3672.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_186_length_39306_cov_4.151447 4885..4887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3672.t1Gcaud3672.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_186_length_39306_cov_4.151447 4516..4887 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3672.t1 ID=Gcaud3672.t1|Name=Gcaud3672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=124bp
LDTEIDRALSAFEDLVASCQISDRTSNTRAEYQTQVEASSLAAAADQLLK
LISELKLAVVTQNVSEVKAENRTLHAFMDKNSHEMLTQMLNLGDNIGKML
RVLEKNYYASCTTWFPNTESGPN*
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spliced messenger RNA

>Gcaud3672.t1 ID=Gcaud3672.t1|Name=Gcaud3672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:4516..4887- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGACACCGAGATCGACCGCGCGCTCAGCGCCTTCGAGGACCTGGTGGC
GTCGTGTCAGATCAGCGACCGCACCAGCAACACGCGCGCCGAGTACCAGA
CGCAGGTGGAGGCGTCCAGTCTGGCCGCCGCCGCCGACCAGCTGCTCAAG
CTCATTTCGGAGCTCAAGCTGGCTGTCGTCACGCAGAACGTCTCCGAGGT
GAAGGCCGAGAACCGCACGCTGCACGCCTTCATGGACAAGAATAGCCATG
AGATGCTCACGCAGATGCTCAACTTGGGCGATAACATTGGCAAGATGTTG
CGCGTGTTGGAGAAGAACTACTACGCCAGTTGTACCACATGGTTCCCCAA
CACTGAGAGCGGTCCAAATTAA
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protein sequence of Gcaud3672.t1

>Gcaud3672.t1 ID=Gcaud3672.t1|Name=Gcaud3672.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=124bp
LDTEIDRALSAFEDLVASCQISDRTSNTRAEYQTQVEASSLAAAADQLLK
LISELKLAVVTQNVSEVKAENRTLHAFMDKNSHEMLTQMLNLGDNIGKML
RVLEKNYYASCTTWFPNTESGPN*
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mRNA from alignment at NODE_186_length_39306_cov_4.151447:4516..4887-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3672.t1 ID=Gcaud3672.t1|Name=Gcaud3672.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=372bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:4516..4887- (Gracilaria caudata M_176_S67 male)
CTGGACACCGAGATCGACCGCGCGCTCAGCGCCTTCGAGGACCTGGTGGC
GTCGTGTCAGATCAGCGACCGCACCAGCAACACGCGCGCCGAGTACCAGA
CGCAGGTGGAGGCGTCCAGTCTGGCCGCCGCCGCCGACCAGCTGCTCAAG
CTCATTTCGGAGCTCAAGCTGGCTGTCGTCACGCAGAACGTCTCCGAGGT
GAAGGCCGAGAACCGCACGCTGCACGCCTTCATGGACAAGAATAGCCATG
AGATGCTCACGCAGATGCTCAACTTGGGCGATAACATTGGCAAGATGTTG
CGCGTGTTGGAGAAGAACTACTACGCCAGTTGTACCACATGGTTCCCCAA
CACTGAGAGCGGTCCAAATTAA
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Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:4516..4887-

>Gcaud3672.t1 ID=Gcaud3672.t1|Name=Gcaud3672.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=372bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:4516..4887- (Gracilaria caudata M_176_S67 male)
CTGGACACCGAGATCGACCGCGCGCTCAGCGCCTTCGAGGACCTGGTGGC
GTCGTGTCAGATCAGCGACCGCACCAGCAACACGCGCGCCGAGTACCAGA
CGCAGGTGGAGGCGTCCAGTCTGGCCGCCGCCGCCGACCAGCTGCTCAAG
CTCATTTCGGAGCTCAAGCTGGCTGTCGTCACGCAGAACGTCTCCGAGGT
GAAGGCCGAGAACCGCACGCTGCACGCCTTCATGGACAAGAATAGCCATG
AGATGCTCACGCAGATGCTCAACTTGGGCGATAACATTGGCAAGATGTTG
CGCGTGTTGGAGAAGAACTACTACGCCAGTTGTACCACATGGTTCCCCAA
CACTGAGAGCGGTCCAAATTAA
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