Gcaud3670.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3670.t1
Unique Name	Gcaud3670.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	349

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:2249..3295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMT063CT
Preferred name	ALB3.1
PFAMs	60KD_IMP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03217
KEGG TC	2.A.9
KEGG Pathway	ko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG Module	M00335
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006605,GO:0006612,GO:0006810,GO:0006886,GO:0006996,GO:0008104,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019904,GO:0022607,GO:0031976,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034357,GO:0034613,GO:0042651,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045036,GO:0045038,GO:0045184,GO:0046907,GO:0050789,GO:0050793,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051291,GO:0051641,GO:0051649,GO:0055035,GO:0055085,GO:0061024,GO:0065002,GO:0065003,GO:0065007,GO:0070206,GO:0070208,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072596,GO:0072598,GO:0072657,GO:0090150,GO:0090342
Evalue	3.82e-113
EggNOG OGs	COG0706@1\|root,KOG1239@2759\|Eukaryota
Description	membrane insertase activity
COG category	U
BRITE	ko00000,ko00001,ko00002,ko02044,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3670	Gcaud3670	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 2249..3295 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3670.t1.start1	Gcaud3670.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 2249..2251 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3670.t1.CDS1	Gcaud3670.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 2249..3295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3670.t1.exon1	Gcaud3670.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 2249..3295 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3670.t1.stop1	Gcaud3670.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 3293..3295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3670.t1	Gcaud3670.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 2249..3295 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+

mRNA sequence

>Gcaud3670.t1 ID=Gcaud3670.t1|Name=Gcaud3670.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=349bp
MALDPHTLHHVASSFAVAPHIDLHSLQLVLADAAAAVSDTAAAAVDTAVE
AKKSGWWDSFVNLVETAIVSLHGRLSAAGVPGAYGLSIILFTVVIKAFTF
PLNFRQMESTMRMQAIAPRLKKIQADYKDNPQVMNQMTAQLYKDEQINPL
AGCLPVIVQIPVWIALYRSVLNLAADNLLNESFLWLPSLQGPVSKTGQGL
NTWLFPLQNGAPPIGWHDAACYLVLPVVLVATQFVSQRVISPPNQDPSQQ
QANAILKFMPFLIGWFALNVPSGLGVYWVTNNLLSTAQTIFIRSRFPELS
KPPSDSSASSTDAASPPVSRLDIADGFRSNGTDAPKKTTKSKKRRKRR*

spliced messenger RNA

>Gcaud3670.t1 ID=Gcaud3670.t1|Name=Gcaud3670.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTTGACCCGCATACGCTGCATCACGTGGCCAGTTCGTTTGCGGT
GGCGCCGCACATCGATCTGCACTCGCTGCAACTTGTGTTAGCAGATGCTG
CCGCCGCTGTTTCCGATACCGCCGCCGCGGCCGTCGACACGGCTGTGGAG
GCCAAGAAGTCCGGCTGGTGGGACTCGTTTGTGAACCTGGTTGAGACTGC
CATTGTGTCGTTGCACGGGCGCCTCTCGGCCGCCGGTGTGCCCGGGGCGT
ACGGGCTGTCCATTATTCTTTTCACCGTCGTGATCAAGGCGTTCACCTTC
CCGCTCAACTTTCGTCAAATGGAGTCCACCATGCGCATGCAGGCCATTGC
GCCGCGCCTCAAGAAGATTCAGGCCGATTACAAGGATAATCCGCAGGTGA
TGAATCAGATGACCGCTCAACTGTACAAGGACGAGCAGATCAATCCGCTT
GCCGGCTGCTTGCCTGTGATTGTTCAAATTCCGGTGTGGATTGCGTTGTA
CCGTTCCGTGCTCAATCTTGCCGCCGATAATCTGCTCAACGAGTCGTTCT
TGTGGCTTCCCAGTCTTCAAGGGCCTGTCAGCAAGACGGGGCAGGGACTC
AATACATGGTTGTTTCCACTGCAAAACGGCGCGCCGCCTATTGGCTGGCA
TGATGCTGCGTGTTATCTCGTGCTTCCTGTCGTCTTGGTGGCCACTCAGT
TTGTGTCGCAGCGTGTTATTTCACCGCCCAACCAAGATCCCAGTCAACAA
CAAGCAAATGCTATTCTCAAGTTCATGCCTTTTCTAATCGGTTGGTTTGC
ACTCAATGTGCCGTCTGGATTAGGTGTGTATTGGGTCACCAACAATCTAC
TGAGCACGGCGCAAACCATCTTCATACGATCGCGATTCCCCGAGCTTTCC
AAACCGCCTTCCGACTCTTCCGCTTCAAGTACTGACGCTGCGTCTCCTCC
CGTTTCACGGCTGGATATTGCGGACGGATTCAGATCAAACGGAACGGACG
CTCCGAAGAAGACAACCAAATCGAAGAAGCGTCGTAAGCGAAGATAG

protein sequence of Gcaud3670.t1

>Gcaud3670.t1 ID=Gcaud3670.t1|Name=Gcaud3670.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=349bp
MALDPHTLHHVASSFAVAPHIDLHSLQLVLADAAAAVSDTAAAAVDTAVE
AKKSGWWDSFVNLVETAIVSLHGRLSAAGVPGAYGLSIILFTVVIKAFTF
PLNFRQMESTMRMQAIAPRLKKIQADYKDNPQVMNQMTAQLYKDEQINPL
AGCLPVIVQIPVWIALYRSVLNLAADNLLNESFLWLPSLQGPVSKTGQGL
NTWLFPLQNGAPPIGWHDAACYLVLPVVLVATQFVSQRVISPPNQDPSQQ
QANAILKFMPFLIGWFALNVPSGLGVYWVTNNLLSTAQTIFIRSRFPELS
KPPSDSSASSTDAASPPVSRLDIADGFRSNGTDAPKKTTKSKKRRKRR*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3670.t1 ID=Gcaud3670.t1|Name=Gcaud3670.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1047bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+ (Gracilaria caudata M_176_S67 male)
ATGGCGCTTGACCCGCATACGCTGCATCACGTGGCCAGTTCGTTTGCGGT
GGCGCCGCACATCGATCTGCACTCGCTGCAACTTGTGTTAGCAGATGCTG
CCGCCGCTGTTTCCGATACCGCCGCCGCGGCCGTCGACACGGCTGTGGAG
GCCAAGAAGTCCGGCTGGTGGGACTCGTTTGTGAACCTGGTTGAGACTGC
CATTGTGTCGTTGCACGGGCGCCTCTCGGCCGCCGGTGTGCCCGGGGCGT
ACGGGCTGTCCATTATTCTTTTCACCGTCGTGATCAAGGCGTTCACCTTC
CCGCTCAACTTTCGTCAAATGGAGTCCACCATGCGCATGCAGGCCATTGC
GCCGCGCCTCAAGAAGATTCAGGCCGATTACAAGGATAATCCGCAGGTGA
TGAATCAGATGACCGCTCAACTGTACAAGGACGAGCAGATCAATCCGCTT
GCCGGCTGCTTGCCTGTGATTGTTCAAATTCCGGTGTGGATTGCGTTGTA
CCGTTCCGTGCTCAATCTTGCCGCCGATAATCTGCTCAACGAGTCGTTCT
TGTGGCTTCCCAGTCTTCAAGGGCCTGTCAGCAAGACGGGGCAGGGACTC
AATACATGGTTGTTTCCACTGCAAAACGGCGCGCCGCCTATTGGCTGGCA
TGATGCTGCGTGTTATCTCGTGCTTCCTGTCGTCTTGGTGGCCACTCAGT
TTGTGTCGCAGCGTGTTATTTCACCGCCCAACCAAGATCCCAGTCAACAA
CAAGCAAATGCTATTCTCAAGTTCATGCCTTTTCTAATCGGTTGGTTTGC
ACTCAATGTGCCGTCTGGATTAGGTGTGTATTGGGTCACCAACAATCTAC
TGAGCACGGCGCAAACCATCTTCATACGATCGCGATTCCCCGAGCTTTCC
AAACCGCCTTCCGACTCTTCCGCTTCAAGTACTGACGCTGCGTCTCCTCC
CGTTTCACGGCTGGATATTGCGGACGGATTCAGATCAAACGGAACGGACG
CTCCGAAGAAGACAACCAAATCGAAGAAGCGTCGTAAGCGAAGATAG

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+

>Gcaud3670.t1 ID=Gcaud3670.t1|Name=Gcaud3670.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1047bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:2249..3295+ (Gracilaria caudata M_176_S67 male)
ATGGCGCTTGACCCGCATACGCTGCATCACGTGGCCAGTTCGTTTGCGGT
GGCGCCGCACATCGATCTGCACTCGCTGCAACTTGTGTTAGCAGATGCTG
CCGCCGCTGTTTCCGATACCGCCGCCGCGGCCGTCGACACGGCTGTGGAG
GCCAAGAAGTCCGGCTGGTGGGACTCGTTTGTGAACCTGGTTGAGACTGC
CATTGTGTCGTTGCACGGGCGCCTCTCGGCCGCCGGTGTGCCCGGGGCGT
ACGGGCTGTCCATTATTCTTTTCACCGTCGTGATCAAGGCGTTCACCTTC
CCGCTCAACTTTCGTCAAATGGAGTCCACCATGCGCATGCAGGCCATTGC
GCCGCGCCTCAAGAAGATTCAGGCCGATTACAAGGATAATCCGCAGGTGA
TGAATCAGATGACCGCTCAACTGTACAAGGACGAGCAGATCAATCCGCTT
GCCGGCTGCTTGCCTGTGATTGTTCAAATTCCGGTGTGGATTGCGTTGTA
CCGTTCCGTGCTCAATCTTGCCGCCGATAATCTGCTCAACGAGTCGTTCT
TGTGGCTTCCCAGTCTTCAAGGGCCTGTCAGCAAGACGGGGCAGGGACTC
AATACATGGTTGTTTCCACTGCAAAACGGCGCGCCGCCTATTGGCTGGCA
TGATGCTGCGTGTTATCTCGTGCTTCCTGTCGTCTTGGTGGCCACTCAGT
TTGTGTCGCAGCGTGTTATTTCACCGCCCAACCAAGATCCCAGTCAACAA
CAAGCAAATGCTATTCTCAAGTTCATGCCTTTTCTAATCGGTTGGTTTGC
ACTCAATGTGCCGTCTGGATTAGGTGTGTATTGGGTCACCAACAATCTAC
TGAGCACGGCGCAAACCATCTTCATACGATCGCGATTCCCCGAGCTTTCC
AAACCGCCTTCCGACTCTTCCGCTTCAAGTACTGACGCTGCGTCTCCTCC
CGTTTCACGGCTGGATATTGCGGACGGATTCAGATCAAACGGAACGGACG
CTCCGAAGAAGACAACCAAATCGAAGAAGCGTCGTAAGCGAAGATAG