Gcaud3669.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3669.t1
Unique Name	Gcaud3669.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_186_length_39306_cov_4.151447	contig	NODE_186_length_39306_cov_4.151447:415..1293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1200792.AKYF01000010_gene1601
Preferred name	czcD
PFAMs	Cation_efflux,ZT_dimer
Max annot lvl	91061\|Bacilli
KEGG ko	ko:K16264
KEGG TC	2.A.4.1
Evalue	5.04e-25
EggNOG OGs	COG1230@1\|root,COG1230@2\|Bacteria,1TR92@1239\|Firmicutes,4HBCQ@91061\|Bacilli,26QAH@186822\|Paenibacillaceae
Description	cation diffusion facilitator family transporter
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3669	Gcaud3669	Gracilaria caudata M_176_S67 male	gene	NODE_186_length_39306_cov_4.151447 415..1293 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3669.t1.start1	Gcaud3669.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_186_length_39306_cov_4.151447 415..417 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3669.t1.CDS1	Gcaud3669.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_186_length_39306_cov_4.151447 415..1293 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3669.t1.exon1	Gcaud3669.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_186_length_39306_cov_4.151447 415..1293 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3669.t1.stop1	Gcaud3669.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_186_length_39306_cov_4.151447 1291..1293 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3669.t1	Gcaud3669.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_186_length_39306_cov_4.151447 415..1293 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_186_length_39306_cov_4.151447:415..1293+
coding sequence from alignment at NODE_186_length_39306_cov_4.151447:415..1293+

mRNA sequence

>Gcaud3669.t1 ID=Gcaud3669.t1|Name=Gcaud3669.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MVEALHTALDGLTVVISLISVLISRRQAQSRFSYGYARAELLSALLSVLA
LALLCVKLFATGVRRLWRIAHGERVLVDGKYVVIAEALTLVSNAAMAGVL
ARGASEKSLNLRALRAHVIADCIENVMVLMGGVLMWHFPRAAVVDPLLTI
AIVLLIVVMNAGICRETVAALMQAAPAGVLEGVSEQVAKVEGVAEVRQLH
VWTLTSGFLIGSIVVCVDVEAGARDVKRRVRKVFAQFGVDNVTVQIDGAD
ENEREHVEVDAGENPGIAHGPNGYGPVPDDDDDDDDDDDEIV*

spliced messenger RNA

>Gcaud3669.t1 ID=Gcaud3669.t1|Name=Gcaud3669.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:415..1293+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAGGCGCTTCACACCGCGTTGGACGGTCTCACCGTGGTGATCTC
GCTCATCTCCGTGTTGATTTCGCGCCGACAGGCGCAAAGTCGCTTCTCGT
ACGGCTACGCGCGCGCGGAGCTGCTGTCGGCGCTGCTGAGCGTGCTGGCG
CTGGCGCTGCTGTGCGTGAAGCTGTTTGCGACGGGCGTGCGTCGACTGTG
GCGCATTGCGCACGGCGAACGCGTGCTGGTGGATGGCAAATACGTGGTGA
TTGCGGAGGCGTTGACGCTGGTGTCTAACGCCGCTATGGCGGGCGTGCTG
GCGCGCGGCGCCAGCGAGAAGAGCCTCAACTTGCGCGCGTTGCGCGCGCA
CGTGATTGCGGATTGTATTGAGAACGTGATGGTGTTGATGGGCGGCGTGT
TGATGTGGCACTTTCCGCGCGCGGCGGTGGTGGACCCGCTTTTGACGATT
GCGATTGTGTTGCTGATTGTGGTGATGAACGCGGGCATCTGTCGGGAGAC
GGTGGCGGCGTTGATGCAGGCGGCGCCGGCTGGCGTGTTGGAGGGCGTGT
CGGAGCAGGTGGCAAAGGTTGAGGGCGTGGCGGAGGTGCGACAGTTGCAT
GTGTGGACGTTGACCAGCGGCTTTCTGATTGGCAGCATTGTGGTTTGTGT
GGATGTGGAGGCGGGCGCGAGGGACGTGAAACGGAGGGTGAGGAAAGTGT
TTGCGCAGTTTGGGGTGGACAACGTGACTGTGCAGATCGATGGCGCTGAT
GAGAATGAACGGGAGCACGTTGAGGTGGACGCAGGCGAAAACCCAGGTAT
CGCACATGGACCCAACGGATATGGACCCGTTCCtgatgatgatgatgacg
acgatgatgatgatgatgaAATTGTATGA

protein sequence of Gcaud3669.t1

>Gcaud3669.t1 ID=Gcaud3669.t1|Name=Gcaud3669.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MVEALHTALDGLTVVISLISVLISRRQAQSRFSYGYARAELLSALLSVLA
LALLCVKLFATGVRRLWRIAHGERVLVDGKYVVIAEALTLVSNAAMAGVL
ARGASEKSLNLRALRAHVIADCIENVMVLMGGVLMWHFPRAAVVDPLLTI
AIVLLIVVMNAGICRETVAALMQAAPAGVLEGVSEQVAKVEGVAEVRQLH
VWTLTSGFLIGSIVVCVDVEAGARDVKRRVRKVFAQFGVDNVTVQIDGAD
ENEREHVEVDAGENPGIAHGPNGYGPVPDDDDDDDDDDDEIV*

mRNA from alignment at NODE_186_length_39306_cov_4.151447:415..1293+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3669.t1 ID=Gcaud3669.t1|Name=Gcaud3669.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:415..1293+ (Gracilaria caudata M_176_S67 male)
ATGGTGGAGGCGCTTCACACCGCGTTGGACGGTCTCACCGTGGTGATCTC
GCTCATCTCCGTGTTGATTTCGCGCCGACAGGCGCAAAGTCGCTTCTCGT
ACGGCTACGCGCGCGCGGAGCTGCTGTCGGCGCTGCTGAGCGTGCTGGCG
CTGGCGCTGCTGTGCGTGAAGCTGTTTGCGACGGGCGTGCGTCGACTGTG
GCGCATTGCGCACGGCGAACGCGTGCTGGTGGATGGCAAATACGTGGTGA
TTGCGGAGGCGTTGACGCTGGTGTCTAACGCCGCTATGGCGGGCGTGCTG
GCGCGCGGCGCCAGCGAGAAGAGCCTCAACTTGCGCGCGTTGCGCGCGCA
CGTGATTGCGGATTGTATTGAGAACGTGATGGTGTTGATGGGCGGCGTGT
TGATGTGGCACTTTCCGCGCGCGGCGGTGGTGGACCCGCTTTTGACGATT
GCGATTGTGTTGCTGATTGTGGTGATGAACGCGGGCATCTGTCGGGAGAC
GGTGGCGGCGTTGATGCAGGCGGCGCCGGCTGGCGTGTTGGAGGGCGTGT
CGGAGCAGGTGGCAAAGGTTGAGGGCGTGGCGGAGGTGCGACAGTTGCAT
GTGTGGACGTTGACCAGCGGCTTTCTGATTGGCAGCATTGTGGTTTGTGT
GGATGTGGAGGCGGGCGCGAGGGACGTGAAACGGAGGGTGAGGAAAGTGT
TTGCGCAGTTTGGGGTGGACAACGTGACTGTGCAGATCGATGGCGCTGAT
GAGAATGAACGGGAGCACGTTGAGGTGGACGCAGGCGAAAACCCAGGTAT
CGCACATGGACCCAACGGATATGGACCCGTTCCtgatgatgatgatgacg
acgatgatgatgatgatgaAATTGTATGA

Coding sequence (CDS) from alignment at NODE_186_length_39306_cov_4.151447:415..1293+

>Gcaud3669.t1 ID=Gcaud3669.t1|Name=Gcaud3669.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_186_length_39306_cov_4.151447:415..1293+ (Gracilaria caudata M_176_S67 male)
ATGGTGGAGGCGCTTCACACCGCGTTGGACGGTCTCACCGTGGTGATCTC
GCTCATCTCCGTGTTGATTTCGCGCCGACAGGCGCAAAGTCGCTTCTCGT
ACGGCTACGCGCGCGCGGAGCTGCTGTCGGCGCTGCTGAGCGTGCTGGCG
CTGGCGCTGCTGTGCGTGAAGCTGTTTGCGACGGGCGTGCGTCGACTGTG
GCGCATTGCGCACGGCGAACGCGTGCTGGTGGATGGCAAATACGTGGTGA
TTGCGGAGGCGTTGACGCTGGTGTCTAACGCCGCTATGGCGGGCGTGCTG
GCGCGCGGCGCCAGCGAGAAGAGCCTCAACTTGCGCGCGTTGCGCGCGCA
CGTGATTGCGGATTGTATTGAGAACGTGATGGTGTTGATGGGCGGCGTGT
TGATGTGGCACTTTCCGCGCGCGGCGGTGGTGGACCCGCTTTTGACGATT
GCGATTGTGTTGCTGATTGTGGTGATGAACGCGGGCATCTGTCGGGAGAC
GGTGGCGGCGTTGATGCAGGCGGCGCCGGCTGGCGTGTTGGAGGGCGTGT
CGGAGCAGGTGGCAAAGGTTGAGGGCGTGGCGGAGGTGCGACAGTTGCAT
GTGTGGACGTTGACCAGCGGCTTTCTGATTGGCAGCATTGTGGTTTGTGT
GGATGTGGAGGCGGGCGCGAGGGACGTGAAACGGAGGGTGAGGAAAGTGT
TTGCGCAGTTTGGGGTGGACAACGTGACTGTGCAGATCGATGGCGCTGAT
GAGAATGAACGGGAGCACGTTGAGGTGGACGCAGGCGAAAACCCAGGTAT
CGCACATGGACCCAACGGATATGGACCCGTTCCtgatgatgatgatgacg
acgatgatgatgatgatgaAATTGTATGA