Gcaud3665.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3665.t1
Unique Name	Gcaud3665.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_78_length_55752_cov_4.650078	contig	NODE_78_length_55752_cov_4.650078:48644..49966 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708699.1
Preferred name	OLE2
PFAMs	Cyt-b5,FA_desaturase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00917
KEGG ko	ko:K00507
KEGG Reaction	R02222
KEGG Pathway	ko01040,ko01212,ko03320,ko04152,ko04212,map01040,map01212,map03320,map04152,map04212
Evalue	9.27e-221
EggNOG OGs	COG1398@1\|root,COG5274@1\|root,KOG0537@2759\|Eukaryota,KOG1600@2759\|Eukaryota
EC	1.14.19.1
Description	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
COG category	I
BRITE	ko00000,ko00001,ko01000,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3665	Gcaud3665	Gracilaria caudata M_176_S67 male	gene	NODE_78_length_55752_cov_4.650078 48644..49966 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3665.t1.stop1	Gcaud3665.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_78_length_55752_cov_4.650078 48644..48646 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3665.t1.CDS1	Gcaud3665.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 48644..49966 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3665.t1.exon1	Gcaud3665.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 48644..49966 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3665.t1.start1	Gcaud3665.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_78_length_55752_cov_4.650078 49964..49966 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3665.t1	Gcaud3665.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_78_length_55752_cov_4.650078 48644..49966 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_78_length_55752_cov_4.650078:48644..49966-
coding sequence from alignment at NODE_78_length_55752_cov_4.650078:48644..49966-

mRNA sequence

>Gcaud3665.t1 ID=Gcaud3665.t1|Name=Gcaud3665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp
MTISDLTEREAMRPTRDAMRPRARAHAELEYDDKKGTYLEKTKSSKYMTD
KELSELPFLQRINWLSTSIIFTPLIGLLLGVWFVPLRRETFILAVLQYIL
TGTGITAGYHRLWSHKAYHASWPVEFVLLAWGAAAFEGSARWWCRNHRAH
HRYVDTDKDPYSVHKGFWYAHIGWMVLKQDSRRTGRVDISDLNAHRGIMF
QHRNYLPIALFFGFIFPLAVATMGWGDFWGALVYACFGRMFFVHQATFCV
NSLAHTFGVQTYSKEHTSYDHIITALVTFGEGYHNYHHEFPHDYRNGIRW
YHYDPTKWIVRFLSYFGLCSRLIRFPNNEIRKAEVQVKQQELDELKKTID
WGHDVRSLGTMDWETVSKRVAEGEKLIVIDGIVHKVDDFMSMHPGGRGIL
EFWKGRDATSAFNGEVYKHSKGARNLLAHLRIATLKEELE*

spliced messenger RNA

>Gcaud3665.t1 ID=Gcaud3665.t1|Name=Gcaud3665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:48644..49966- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATCTCCGACTTGACGGAGCGCGAGGCGATGCGGCCAACGCGCGA
TGCGATGCGCCCGCGCGCGCGCGCGCACGCCGAGCTGGAGTACGATGACA
AGAAGGGCACGTACTTGGAGAAGACCAAGAGCTCCAAGTACATGACCGAC
AAGGAACTCAGCGAGCTGCCGTTTCTGCAGCGAATCAATTGGCTTTCCAC
CAGCATCATCTTCACGCCGCTCATCGGGCTGTTGCTGGGCGTGTGGTTCG
TGCCTCTTCGTCGCGAGACGTTTATTCTGGCCGTGCTTCAGTACATTCTC
ACCGGCACCGGCATCACCGCGGGCTACCATCGTCTGTGGTCGCACAAAGC
GTACCACGCCTCGTGGCCGGTGGAGTTTGTGCTGCTCGCGTGGGGCGCCG
CGGCGTTCGAGGGATCGGCGCGCTGGTGGTGCCGCAATCATCGCGCGCAT
CACCGTTACGTCGACACGGACAAGGACCCTTACTCGGTGCACAAGGGCTT
CTGGTACGCGCACATTGGATGGATGGTGCTCAAGCAGGACTCGAGACGCA
CGGGACGCGTGGACATCAGCGACCTCAACGCGCACCGCGGCATCATGTTC
CAGCACAGGAACTACCTGCCGATTGCGCTGTTCTTCGGCTTCATCTTTCC
GTTGGCCGTGGCCACAATGGGCTGGGGCGACTTTTGGGGCGCGTTGGTGT
ACGCGTGCTTTGGACGAATGTTCTTTGTGCACCAGGCGACGTTTTGTGTG
AACAGTCTGGCGCATACGTTTGGTGTGCAAACGTACTCGAAGGAACACAC
CAGCTACGATCACATCATCACCGCGCTGGTGACGTTTGGCGAGGGCTACC
ACAACTACCACCACGAGTTCCCGCACGACTATCGTAACGGCATTCGGTGG
TACCACTACGACCCTACCAAATGGATCGTGCGCTTCCTGTCGTACTTTGG
GCTGTGTTCGCGATTGATTCGTTTCCCGAATAACGAAATCCGAAAGGCTG
AGGTGCAGGTGAAGCAACAGGAGCTGGATGAGCTCAAGAAGACGATCGAC
TGGGGGCACGACGTGCGCTCGCTGGGCACGATGGACTGGGAGACGGTGTC
TAAACGCGTGGCGGAGGGGGAGAAACTGATTGTGATCGATGGCATTGTGC
ACAAGGTGGACGACTTCATGTCCATGCACCCCGGTGGAAGGGGCATCCTG
GAGTTCTGGAAGGGACGCGATGCCACCAGCGCGTTCAACGGCGAGGTGTA
CAAACATTCGAAGGGCGCACGCAACTTGCTGGCTCATCTCAGAATCGCAA
CGCTCAAAGAGGAACTTGAATAG

protein sequence of Gcaud3665.t1

>Gcaud3665.t1 ID=Gcaud3665.t1|Name=Gcaud3665.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=441bp
MTISDLTEREAMRPTRDAMRPRARAHAELEYDDKKGTYLEKTKSSKYMTD
KELSELPFLQRINWLSTSIIFTPLIGLLLGVWFVPLRRETFILAVLQYIL
TGTGITAGYHRLWSHKAYHASWPVEFVLLAWGAAAFEGSARWWCRNHRAH
HRYVDTDKDPYSVHKGFWYAHIGWMVLKQDSRRTGRVDISDLNAHRGIMF
QHRNYLPIALFFGFIFPLAVATMGWGDFWGALVYACFGRMFFVHQATFCV
NSLAHTFGVQTYSKEHTSYDHIITALVTFGEGYHNYHHEFPHDYRNGIRW
YHYDPTKWIVRFLSYFGLCSRLIRFPNNEIRKAEVQVKQQELDELKKTID
WGHDVRSLGTMDWETVSKRVAEGEKLIVIDGIVHKVDDFMSMHPGGRGIL
EFWKGRDATSAFNGEVYKHSKGARNLLAHLRIATLKEELE*

mRNA from alignment at NODE_78_length_55752_cov_4.650078:48644..49966-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3665.t1 ID=Gcaud3665.t1|Name=Gcaud3665.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:48644..49966- (Gracilaria caudata M_176_S67 male)
ATGACCATCTCCGACTTGACGGAGCGCGAGGCGATGCGGCCAACGCGCGA
TGCGATGCGCCCGCGCGCGCGCGCGCACGCCGAGCTGGAGTACGATGACA
AGAAGGGCACGTACTTGGAGAAGACCAAGAGCTCCAAGTACATGACCGAC
AAGGAACTCAGCGAGCTGCCGTTTCTGCAGCGAATCAATTGGCTTTCCAC
CAGCATCATCTTCACGCCGCTCATCGGGCTGTTGCTGGGCGTGTGGTTCG
TGCCTCTTCGTCGCGAGACGTTTATTCTGGCCGTGCTTCAGTACATTCTC
ACCGGCACCGGCATCACCGCGGGCTACCATCGTCTGTGGTCGCACAAAGC
GTACCACGCCTCGTGGCCGGTGGAGTTTGTGCTGCTCGCGTGGGGCGCCG
CGGCGTTCGAGGGATCGGCGCGCTGGTGGTGCCGCAATCATCGCGCGCAT
CACCGTTACGTCGACACGGACAAGGACCCTTACTCGGTGCACAAGGGCTT
CTGGTACGCGCACATTGGATGGATGGTGCTCAAGCAGGACTCGAGACGCA
CGGGACGCGTGGACATCAGCGACCTCAACGCGCACCGCGGCATCATGTTC
CAGCACAGGAACTACCTGCCGATTGCGCTGTTCTTCGGCTTCATCTTTCC
GTTGGCCGTGGCCACAATGGGCTGGGGCGACTTTTGGGGCGCGTTGGTGT
ACGCGTGCTTTGGACGAATGTTCTTTGTGCACCAGGCGACGTTTTGTGTG
AACAGTCTGGCGCATACGTTTGGTGTGCAAACGTACTCGAAGGAACACAC
CAGCTACGATCACATCATCACCGCGCTGGTGACGTTTGGCGAGGGCTACC
ACAACTACCACCACGAGTTCCCGCACGACTATCGTAACGGCATTCGGTGG
TACCACTACGACCCTACCAAATGGATCGTGCGCTTCCTGTCGTACTTTGG
GCTGTGTTCGCGATTGATTCGTTTCCCGAATAACGAAATCCGAAAGGCTG
AGGTGCAGGTGAAGCAACAGGAGCTGGATGAGCTCAAGAAGACGATCGAC
TGGGGGCACGACGTGCGCTCGCTGGGCACGATGGACTGGGAGACGGTGTC
TAAACGCGTGGCGGAGGGGGAGAAACTGATTGTGATCGATGGCATTGTGC
ACAAGGTGGACGACTTCATGTCCATGCACCCCGGTGGAAGGGGCATCCTG
GAGTTCTGGAAGGGACGCGATGCCACCAGCGCGTTCAACGGCGAGGTGTA
CAAACATTCGAAGGGCGCACGCAACTTGCTGGCTCATCTCAGAATCGCAA
CGCTCAAAGAGGAACTTGAATAG

Coding sequence (CDS) from alignment at NODE_78_length_55752_cov_4.650078:48644..49966-

>Gcaud3665.t1 ID=Gcaud3665.t1|Name=Gcaud3665.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1323bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:48644..49966- (Gracilaria caudata M_176_S67 male)
ATGACCATCTCCGACTTGACGGAGCGCGAGGCGATGCGGCCAACGCGCGA
TGCGATGCGCCCGCGCGCGCGCGCGCACGCCGAGCTGGAGTACGATGACA
AGAAGGGCACGTACTTGGAGAAGACCAAGAGCTCCAAGTACATGACCGAC
AAGGAACTCAGCGAGCTGCCGTTTCTGCAGCGAATCAATTGGCTTTCCAC
CAGCATCATCTTCACGCCGCTCATCGGGCTGTTGCTGGGCGTGTGGTTCG
TGCCTCTTCGTCGCGAGACGTTTATTCTGGCCGTGCTTCAGTACATTCTC
ACCGGCACCGGCATCACCGCGGGCTACCATCGTCTGTGGTCGCACAAAGC
GTACCACGCCTCGTGGCCGGTGGAGTTTGTGCTGCTCGCGTGGGGCGCCG
CGGCGTTCGAGGGATCGGCGCGCTGGTGGTGCCGCAATCATCGCGCGCAT
CACCGTTACGTCGACACGGACAAGGACCCTTACTCGGTGCACAAGGGCTT
CTGGTACGCGCACATTGGATGGATGGTGCTCAAGCAGGACTCGAGACGCA
CGGGACGCGTGGACATCAGCGACCTCAACGCGCACCGCGGCATCATGTTC
CAGCACAGGAACTACCTGCCGATTGCGCTGTTCTTCGGCTTCATCTTTCC
GTTGGCCGTGGCCACAATGGGCTGGGGCGACTTTTGGGGCGCGTTGGTGT
ACGCGTGCTTTGGACGAATGTTCTTTGTGCACCAGGCGACGTTTTGTGTG
AACAGTCTGGCGCATACGTTTGGTGTGCAAACGTACTCGAAGGAACACAC
CAGCTACGATCACATCATCACCGCGCTGGTGACGTTTGGCGAGGGCTACC
ACAACTACCACCACGAGTTCCCGCACGACTATCGTAACGGCATTCGGTGG
TACCACTACGACCCTACCAAATGGATCGTGCGCTTCCTGTCGTACTTTGG
GCTGTGTTCGCGATTGATTCGTTTCCCGAATAACGAAATCCGAAAGGCTG
AGGTGCAGGTGAAGCAACAGGAGCTGGATGAGCTCAAGAAGACGATCGAC
TGGGGGCACGACGTGCGCTCGCTGGGCACGATGGACTGGGAGACGGTGTC
TAAACGCGTGGCGGAGGGGGAGAAACTGATTGTGATCGATGGCATTGTGC
ACAAGGTGGACGACTTCATGTCCATGCACCCCGGTGGAAGGGGCATCCTG
GAGTTCTGGAAGGGACGCGATGCCACCAGCGCGTTCAACGGCGAGGTGTA
CAAACATTCGAAGGGCGCACGCAACTTGCTGGCTCATCTCAGAATCGCAA
CGCTCAAAGAGGAACTTGAATAG