Gcaud3662.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3662.t1
Unique Name	Gcaud3662.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_78_length_55752_cov_4.650078	contig	NODE_78_length_55752_cov_4.650078:42951..44222 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3662	Gcaud3662	Gracilaria caudata M_176_S67 male	gene	NODE_78_length_55752_cov_4.650078 42951..44222 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3662.t1	Gcaud3662.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_78_length_55752_cov_4.650078 42951..44222 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3662.t1.stop1	Gcaud3662.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_78_length_55752_cov_4.650078 42951..42953 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3662.t1.CDS1	Gcaud3662.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 42951..43415 -
Gcaud3662.t1.CDS2	Gcaud3662.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 43512..43828 -
Gcaud3662.t1.CDS3	Gcaud3662.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_78_length_55752_cov_4.650078 43982..44222 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3662.t1.exon1	Gcaud3662.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 42951..43415 -
Gcaud3662.t1.exon2	Gcaud3662.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 43512..43828 -
Gcaud3662.t1.exon3	Gcaud3662.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_78_length_55752_cov_4.650078 43982..44222 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3662.t1.intron1	Gcaud3662.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 43416..43511 -
Gcaud3662.t1.intron2	Gcaud3662.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_78_length_55752_cov_4.650078 43829..43981 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3662.t1.start1	Gcaud3662.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_78_length_55752_cov_4.650078 44220..44222 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_78_length_55752_cov_4.650078:42951..44222-
coding sequence from alignment at NODE_78_length_55752_cov_4.650078:42951..44222-

mRNA sequence

>Gcaud3662.t1 ID=Gcaud3662.t1|Name=Gcaud3662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
LILYPAHDLLGLYVYNFLDSDNKNSNDDIGLGLTDAKRNRAVQQAKQKLA
LKRTDTVTVINKIVTLLQGVQHNTTMQFDQWIYHLEPKDGFLFVNVDVGI
HIGHVVDTYESSDSSHYDNEDLDRFARRLSEKYYGNVMDVTGVIIAMNIN
NNHWGILLAIEKTRDTCEMLWGDGLDVEFPKQRMDFPDGYRCGAYTLSMI
SEFSKTRGYMPKSSFNEPFSPSLTESYRWACARARVELIIWSAAVNPQTA
LMSNEFTVNSDHDAWRMRVYQSHREREAKKNQKTKVMRSDRKDPSSKSCK
ATPTEPRNGQGGTRDPQNLREILKDLREILKNLREILKDL*

spliced messenger RNA

>Gcaud3662.t1 ID=Gcaud3662.t1|Name=Gcaud3662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:42951..44222- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGATTTTATATCCAGCACATGATTTGCTTGGCCTCTATGTTTACAACTT
TCTTGACTCTGATAACAAGAACAGTAATGATGATATTGGTCTTGGATTAA
CTGATGCGAAAAGAAATCGAGCAGTACAACAAGCAAAACAAAAACTGGCA
CTTAAACGCACAGATACCGTTACAGTTATCAACAAAATTGTGACGTTATT
GCAAGGCGTGCAGCATAATACTACCATGCAGTTCGACCAATGGATCTATC
ATCTGGAACCAAAAGATGGGTTTTTGTTTGTGAATGTAGACGTGGGAATT
CACATTGGACATGTTGTAGACACCTATGAGTCTTCTGACAGTTCTCATTA
CGATAATGAAGATCTCGACCGTTTCGCTCGCAGGCTTTCAGAGAAATATT
ATGGTAATGTGATGGATGTAACTGGTGTGATTATTGCGATGAATATTAAC
AATAATCATTGGGGTATTTTGCTCGCGATAGAGAAAACTCGAGATACGTG
CGAAATGCTTTGGGGAGATGGCCTAGACGTTGAATTTCCAAAACAACGAA
TGGATTTCCCTGATGGTTATAGGTGTGGAGCATATACCTTATCAATGATC
TCGGAATTCTCGAAGACTCGAGGTTACATGCCAAAATCTTCTTTCAACGA
GCCTTTCAGTCCTTCTCTTACGGAAAGCTACAGATGGGCGTGTGCTCGGG
CGAGAGTAGAATTGATTATTTGGAGCGCCGCTGTTAATCCGCAAACCGCT
TTGATGTCCAATGAATTCACTGTGAACAGTGATCATGATGCTTGGAGAAT
GAGGGTGTACCAGAGTCATCGGGAGAGAGAAGCTAAGAAGAACCAAAAAA
CAAAAGTAATGCGTAGTGATCGCAAAGATCCTTCTTCGAAATCATGCAAA
GCCACCCCAACGGAACCACGAAATGGTCAAGGTGGTACTCGAGATCCTCA
AAATCTACGTGAGATCCTCAAGGATCTACGCGAGATCCTCAAGAATCTAC
GCGAGATCCTCAAGGATCTGTGA

protein sequence of Gcaud3662.t1

>Gcaud3662.t1 ID=Gcaud3662.t1|Name=Gcaud3662.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
LILYPAHDLLGLYVYNFLDSDNKNSNDDIGLGLTDAKRNRAVQQAKQKLA
LKRTDTVTVINKIVTLLQGVQHNTTMQFDQWIYHLEPKDGFLFVNVDVGI
HIGHVVDTYESSDSSHYDNEDLDRFARRLSEKYYGNVMDVTGVIIAMNIN
NNHWGILLAIEKTRDTCEMLWGDGLDVEFPKQRMDFPDGYRCGAYTLSMI
SEFSKTRGYMPKSSFNEPFSPSLTESYRWACARARVELIIWSAAVNPQTA
LMSNEFTVNSDHDAWRMRVYQSHREREAKKNQKTKVMRSDRKDPSSKSCK
ATPTEPRNGQGGTRDPQNLREILKDLREILKNLREILKDL*

mRNA from alignment at NODE_78_length_55752_cov_4.650078:42951..44222-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3662.t1 ID=Gcaud3662.t1|Name=Gcaud3662.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1272bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:42951..44222- (Gracilaria caudata M_176_S67 male)
CTGATTTTATATCCAGCACATGATTTGCTTGGCCTCTATGTTTACAACTT
TCTTGACTCTGATAACAAGAACAGTAATGATGATATTGGTCTTGGATTAA
CTGATGCGAAAAGAAATCGAGCAGTACAACAAGCAAAACAAAAACTGGCA
CTTAAACGCACAGATACCGTTACAGTTATCAACAAAATTGTGACGTTATT
GCAAGGCGTGCAGCATAATACTACCATGCAGTTCGACCAATGTACGTGTC
GCGGTTTCAAAAGAACTTCGAAAGCTTTTGTTGCCCTTGATAATTCTTTT
GCAGAACAAATGGAACAAACATGGGTTTTCGCGCCTTTTCTCGCAAATTG
CAGCCGTAGAAGAGATTAATTCTGTTACACGTTGTTGACAGCAGGGATCT
ATCATCTGGAACCAAAAGATGGGTTTTTGTTTGTGAATGTAGACGTGGGA
ATTCACATTGGACATGTTGTAGACACCTATGAGTCTTCTGACAGTTCTCA
TTACGATAATGAAGATCTCGACCGTTTCGCTCGCAGGCTTTCAGAGAAAT
ATTATGGTAATGTGATGGATGTAACTGGTGTGATTATTGCGATGAATATT
AACAATAATCATTGGGGTATTTTGCTCGCGATAGAGAAAACTCGAGATAC
GTGCGAAATGCTTTGGGGAGATGGCCTAGACGTTGAATTTCCAAAACAAC
GAATGGATTTCGTCGCTGCAGCTATAGGCCATGTTCTTCGTAGGAATATG
TCATAGGTGTACAAATCGGAAAACTATATGCTACACACTCTCAAGCTCCC
CAGACAGCCTGATGGTTATAGGTGTGGAGCATATACCTTATCAATGATCT
CGGAATTCTCGAAGACTCGAGGTTACATGCCAAAATCTTCTTTCAACGAG
CCTTTCAGTCCTTCTCTTACGGAAAGCTACAGATGGGCGTGTGCTCGGGC
GAGAGTAGAATTGATTATTTGGAGCGCCGCTGTTAATCCGCAAACCGCTT
TGATGTCCAATGAATTCACTGTGAACAGTGATCATGATGCTTGGAGAATG
AGGGTGTACCAGAGTCATCGGGAGAGAGAAGCTAAGAAGAACCAAAAAAC
AAAAGTAATGCGTAGTGATCGCAAAGATCCTTCTTCGAAATCATGCAAAG
CCACCCCAACGGAACCACGAAATGGTCAAGGTGGTACTCGAGATCCTCAA
AATCTACGTGAGATCCTCAAGGATCTACGCGAGATCCTCAAGAATCTACG
CGAGATCCTCAAGGATCTGTGA

Coding sequence (CDS) from alignment at NODE_78_length_55752_cov_4.650078:42951..44222-

>Gcaud3662.t1 ID=Gcaud3662.t1|Name=Gcaud3662.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_78_length_55752_cov_4.650078:42951..44222- (Gracilaria caudata M_176_S67 male)
CTGATTTTATATCCAGCACATGATTTGCTTGGCCTCTATGTTTACAACTT
TCTTGACTCTGATAACAAGAACAGTAATGATGATATTGGTCTTGGATTAA
CTGATGCGAAAAGAAATCGAGCAGTACAACAAGCAAAACAAAAACTGGCA
CTTAAACGCACAGATACCGTTACAGTTATCAACAAAATTGTGACGTTATT
GCAAGGCGTGCAGCATAATACTACCATGCAGTTCGACCAATGGATCTATC
ATCTGGAACCAAAAGATGGGTTTTTGTTTGTGAATGTAGACGTGGGAATT
CACATTGGACATGTTGTAGACACCTATGAGTCTTCTGACAGTTCTCATTA
CGATAATGAAGATCTCGACCGTTTCGCTCGCAGGCTTTCAGAGAAATATT
ATGGTAATGTGATGGATGTAACTGGTGTGATTATTGCGATGAATATTAAC
AATAATCATTGGGGTATTTTGCTCGCGATAGAGAAAACTCGAGATACGTG
CGAAATGCTTTGGGGAGATGGCCTAGACGTTGAATTTCCAAAACAACGAA
TGGATTTCCCTGATGGTTATAGGTGTGGAGCATATACCTTATCAATGATC
TCGGAATTCTCGAAGACTCGAGGTTACATGCCAAAATCTTCTTTCAACGA
GCCTTTCAGTCCTTCTCTTACGGAAAGCTACAGATGGGCGTGTGCTCGGG
CGAGAGTAGAATTGATTATTTGGAGCGCCGCTGTTAATCCGCAAACCGCT
TTGATGTCCAATGAATTCACTGTGAACAGTGATCATGATGCTTGGAGAAT
GAGGGTGTACCAGAGTCATCGGGAGAGAGAAGCTAAGAAGAACCAAAAAA
CAAAAGTAATGCGTAGTGATCGCAAAGATCCTTCTTCGAAATCATGCAAA
GCCACCCCAACGGAACCACGAAATGGTCAAGGTGGTACTCGAGATCCTCA
AAATCTACGTGAGATCCTCAAGGATCTACGCGAGATCCTCAAGAATCTAC
GCGAGATCCTCAAGGATCTGTGA